Rorug02G0503800

Agglutinin domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
63566399 .. 63567418
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0503800.1

Sequence Viewer

Length: 354 bp
ATGGCAGCCAGGTTGACTCTCTTCTCTCCCACCACAACATTTCTAGGACCCTCAGGCCAATCACCACTATCTACTCTTTCTTTCACTTCCATTTCACCAAAGAGGAGAGCAAACAGTTTCAAGATTCAAGCAGATTTGGGTGGTGGAGATGCAGAAGCAAATAAGGGAGGAAAGAAAAAGTTTATAACTAGAGAACAAGAGCCAGAGCAGTACTGGCAAACAGCAGGAGAAAGGGAAGGAGAAAATCCCATGATGACCCCTCTTCCTTACATCATCATATTTGGCATGTCTACACCTTTTGTCATCTTAGCCATTGCTTTTGCTAATGGTTGGATTAAGGTGCCAGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

9.69

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 290
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 2 cut(s) 121, 128
AjnI CCWGG 1 cut(s) 8
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 54, 87
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 52
BanI GGYRCC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 10
BfaI CTAG 2 cut(s) 44, 189
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 49, 342
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 218, 344
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 218, 344
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 340
BsnI GGCC 1 cut(s) 57
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 49, 342
BspT107I GGYRCC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 2 cut(s) 218, 344
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 26, 267
BstDEI CTNAG 2 cut(s) 52, 307
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 250, 286
CviJI RGCY 4 cut(s) 8, 57, 202, 311
CviKI_1 RGCY 4 cut(s) 8, 57, 202, 311
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 52, 307
Eam1104I CTCTTC 2 cut(s) 26, 267
EarI CTCTTC 2 cut(s) 26, 267
Eco47I GGWCC 1 cut(s) 47
Eco81I CCTNAGG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 253, 289
FaiI YATR 4 cut(s) 185, 251, 278, 287
FatI CATG 2 cut(s) 249, 285
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 44, 189
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 2 cut(s) 253, 289
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 16, 124
HphI GGTGA 2 cut(s) 54, 87
Hpy166II GTNNAC 2 cut(s) 15, 291
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 15, 291
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 52, 307
Hsp92II CATG 2 cut(s) 253, 289
LpnPI CCDG 5 cut(s) 22, 39, 199, 210, 216
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 44, 189
MboII GAAGA 2 cut(s) 13, 254
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 4 cut(s) 61, 96, 161, 270
MseI TTAA 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 214
NlaIII CATG 2 cut(s) 253, 289
NlaIV GGNNCC 2 cut(s) 49, 342
NspI RCATGY 1 cut(s) 289
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 47
PsiI TTATAA 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 49, 342
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 10
SetI ASST 3 cut(s) 14, 298, 342
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 47
SspMI CTAG 2 cut(s) 44, 189
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 349
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 47
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 2 cut(s) 44, 189
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.