Rw1G012130

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000217
Physical Location & Seq
Forward (+)
27108713 .. 27110218
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012130.1

Sequence Viewer

Length: 1473 bp
ATGGCAGGGCTTCCAAGATTTGTAGTGCTAAAATCCTTGAACCACAAATGCTTGTGTTTAAAAAAAAAAGTTCCAAATGAGCCAGCAGGGTTCATGAAGTGCATTAGAGAACAAGTTGTGAGTCCACAGGCAAAGTTTGAAGTGGAGATGGCAAAGACTGGGAATGGAATGGTGCACATAAGATGCTGCTACAACAACAAGTACTGGGTGACAAACCAGGCTGCCAGGGATGATACAGTTTGGATAGTTGCGTCCGCGGACAAACCAGAGGAAGACCAATCAAAAAGATCCTGCACCTTGTTCAAGCCTAGGTTTGCAGAAGGCCAAACACAAGTCCAATTTATCCACGTCCAACTCTGGATCTCCGTATCCTTGTGGAAGAGTGCTACTACATCCGAGAATGCCTTATATCTAGGAGGACGCGGCGATGTTTTCGAAGTTGTTGACTGGGAATCGCTGGTGATACTTCCCCCACGGGTGGCCTTCAAATCCTTAGAAGATGGCAGTTACCTCTGTTCCCGCTGGATCGAACGACACCCATATCAAAGGTTCGAGTCCAACTTGGATGTTGGAGATCCATTGGTGGCCAAGGAGTTATTCGTTACTGCTGATGGAAGCCTTCGTATAAAGGACGGGCACTACGACAAATTCTGGAGGCGTAGCCCTAACTGGATCTGGGCTGATGCATCATCCGAAAACACGTCCGACGACACTTTGTTTTGGCCTGTCAAAATCCAAGACAATGTCATTGCTCTTCGCAACTTGGGTAACAAAAATTTTTGCGGTGGACTCACCACCGAATACAAAACCAACTGTCTCAACGCCGCCTACCCTAATATCTGTAAACAGTCAAAGCTGGTGGTGGAAGAGATTGTTCTTTCAAGGAACATCTACAATATCAATTTCCGACTCTCCGACTCCAGGATCTACCACGAGCAGGTCATAGAAATGGACACAGCTCTCGCCGTTAATGACAGCCCAAACAGAGACTCCACTATCAGCCTCAAGTTTGCGGAAAAAGATTCCAGGACCCGTAGTTGGAATGGCAGCGTTTCATTGAAGTTGGGTGTCAAAACAACTCTCGAAGTCAAATCTGCTCCACTAATTCTTGACAGAAAGATCGAACTTTCGGCTGAGGTTACGACAGCATGCCAGGAAGCCAATTATGCTGTTGTTGTGCCACCACTATCCAAGATGAAGGTGAGTCTCATAGCTTCAAGGGCTTCATGCGATGTGCCCTTCTCGTACAGTCAGCGTGACATTCTCACTGATGGCCGAACCGTTACCAAAACCATGGATGATGGCCTTTTCACTGGGATTAATGCCTACAAATTTGACTACCAAAACCAGGCATCCTACGATGGCCAGCCTCTCTCTGTCTCTAGCCCATGGAGGCTCCCGCGCGCTGTGTACTTTGGGATTTGTGTGATTCTGGTGTTTAGTGTGTTGCTGCCTTTGCTGCATTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

490

Amino Acids

55.39

Weight (kDa)

8.44

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 3 - 120 7.2e-18 Agglutinin domain
Agglutinin PF07468 159 - 289 5e-09 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 928
AccII CGCG 4 cut(s) 257, 423, 1402, 1404
AciI CCGC 8 cut(s) 255, 257, 423, 520, 783, 825, 1013, 1400
AclWI GGATC 6 cut(s) 282, 368, 533, 569, 680, 932
AcoI YGGCCR 3 cut(s) 585, 1273, 1363
AcsI RAATTY 3 cut(s) 647, 775, 1331
AfaI GTAC 3 cut(s) 203, 1247, 1412
AfiI CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1348
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 7 cut(s) 40, 140, 304, 487, 882, 1060, 1218
AjiI CACGTC 2 cut(s) 349, 702
AjnI CCWGG 6 cut(s) 216, 224, 920, 1025, 1152, 1347
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 3 cut(s) 856, 959, 1214
AluI AGCT 3 cut(s) 856, 959, 1214
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 4 cut(s) 821, 981, 1211, 1384
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 6 cut(s) 282, 368, 533, 569, 680, 932
AoxI GGCC 7 cut(s) 322, 480, 585, 722, 1273, 1303, 1363
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 5 cut(s) 186, 221, 1047, 1450, 1459
ApoI RAATTY 3 cut(s) 647, 775, 1331
AseI ATTAAT 1 cut(s) 1320
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 2 cut(s) 1404, 1406
AspS9I GGNCC 1 cut(s) 1029
AsuHPI GGTGA 4 cut(s) 220, 472, 784, 1213
AsuII TTCGAA 1 cut(s) 435
AvaII GGWCC 1 cut(s) 1029
AvrII CCTAGG 1 cut(s) 308
BaeGI GKGCMC 3 cut(s) 177, 639, 1239
BalI TGGCCA 2 cut(s) 587, 1365
BauI CACGAG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 1134
BbvI GCAGC 5 cut(s) 173, 208, 1059, 1437, 1446
BccI CCATC 6 cut(s) 142, 494, 605, 1265, 1295, 1355
BceAI ACGGC 1 cut(s) 950
BciT130I CCWGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 4 cut(s) 821, 981, 1211, 1384
BfaI CTAG 3 cut(s) 309, 413, 1383
BfuAI ACCTGC 1 cut(s) 928
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1451, 1460
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 7 cut(s) 188, 223, 425, 826, 1049, 1452, 1461
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
Bme18I GGWCC 1 cut(s) 1029
BmgBI CACGTC 2 cut(s) 349, 702
BmgT120I GGNCC 1 cut(s) 1029
BmiI GGNNCC 2 cut(s) 1031, 1397
BmrFI CCNGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
BmrI ACTGGG 4 cut(s) 168, 214, 457, 1323
BmsI GCATC 4 cut(s) 173, 673, 695, 1361
BmuI ACTGGG 4 cut(s) 168, 214, 457, 1323
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 2 cut(s) 673, 904
Bpu10I CCTNAGC 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 989
BsaJI CCNNGG 7 cut(s) 225, 255, 308, 473, 588, 1293, 1388
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1348
Bse1I ACTGG 5 cut(s) 163, 209, 452, 674, 1318
Bse3DI GCAATG 1 cut(s) 747
BseBI CCWGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
BseDI CCNNGG 7 cut(s) 225, 255, 308, 473, 588, 1293, 1388
BseGI GGATG 6 cut(s) 235, 392, 571, 689, 1303, 1352
BseLI CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1348
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 1 cut(s) 1125
BseNI ACTGG 5 cut(s) 163, 209, 452, 674, 1318
BsePI GCGCGC 1 cut(s) 1402
BseSI GKGCMC 3 cut(s) 177, 639, 1239
BseXI GCAGC 5 cut(s) 173, 208, 1059, 1437, 1446
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 4 cut(s) 257, 423, 1402, 1404
BshFI GGCC 7 cut(s) 324, 482, 587, 724, 1275, 1305, 1365
BsiHKAI GWGCWC 1 cut(s) 177
BslI CCNNNNNNNGG 5 cut(s) 478, 921, 937, 1038, 1348
BsmAI GTCTC 4 cut(s) 821, 981, 1211, 1384
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 7 cut(s) 324, 482, 587, 724, 1275, 1305, 1365
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 3 cut(s) 177, 639, 1239
Bsp143I GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
Bsp19I CCATGG 2 cut(s) 1293, 1388
BspACI CCGC 8 cut(s) 255, 257, 423, 520, 783, 825, 1013, 1400
BspANI GGCC 7 cut(s) 324, 482, 587, 724, 1275, 1305, 1365
BspCNI CTCAG 1 cut(s) 1126
BspFNI CGCG 4 cut(s) 257, 423, 1402, 1404
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 1031, 1397
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 6 cut(s) 282, 368, 533, 569, 680, 932
BspQI GCTCTTC 1 cut(s) 759
BspT104I TTCGAA 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 747
BsrI ACTGG 5 cut(s) 163, 209, 452, 674, 1318
BssECI CCNNGG 7 cut(s) 225, 255, 308, 473, 588, 1293, 1388
BssHII GCGCGC 1 cut(s) 1402
BssMI GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
BssSI CACGAG 1 cut(s) 932
BssT1I CCWWGG 4 cut(s) 308, 588, 1293, 1388
Bst2BI CACGAG 1 cut(s) 932
Bst2UI CCWGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
Bst4CI ACNGT 5 cut(s) 238, 815, 849, 1250, 1282
Bst6I CTCTTC 3 cut(s) 374, 759, 861
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 4 cut(s) 84, 1150, 1367, 1404
BstDEI CTNAG 2 cut(s) 493, 1134
BstDSI CCRYGG 4 cut(s) 255, 473, 1293, 1388
BstF5I GGATG 6 cut(s) 235, 392, 571, 689, 1303, 1352
BstFNI CGCG 4 cut(s) 257, 423, 1402, 1404
BstHHI GCGC 2 cut(s) 1404, 1406
BstKTI GATC 7 cut(s) 290, 363, 528, 577, 675, 927, 1122
BstMAI GTCTC 4 cut(s) 821, 981, 1211, 1384
BstMBI GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
BstMWI GCNNNNNNNGC 4 cut(s) 1166, 1220, 1456, 1459
BstNI CCWGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
BstNSI RCATGY 1 cut(s) 1152
BstSCI CCNGG 6 cut(s) 216, 224, 920, 1025, 1152, 1347
BstSLI GKGCMC 3 cut(s) 177, 639, 1239
BstUI CGCG 4 cut(s) 257, 423, 1402, 1404
BstV1I GCAGC 5 cut(s) 173, 208, 1059, 1437, 1446
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 5 cut(s) 287, 360, 574, 672, 924
BstXI CCANNNNNNTGG 1 cut(s) 1294
BstYI RGATCY 5 cut(s) 287, 360, 574, 672, 924
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 7 cut(s) 324, 482, 587, 724, 1275, 1305, 1365
BtgI CCRYGG 4 cut(s) 255, 473, 1293, 1388
BtgZI GCGATG 2 cut(s) 441, 1245
BtrI CACGTC 2 cut(s) 349, 702
BtsCI GGATG 6 cut(s) 235, 392, 571, 689, 1303, 1352
BtsIMutI CAGTG 2 cut(s) 1266, 1311
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 4 cut(s) 84, 1150, 1367, 1404
CciI TCATGA 1 cut(s) 93
CfoI GCGC 2 cut(s) 1404, 1406
Cfr13I GGNCC 1 cut(s) 1029
Cfr42I CCGCGG 1 cut(s) 258
CseI GACGC 2 cut(s) 240, 429
Csp6I GTAC 3 cut(s) 202, 1246, 1411
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 5 cut(s) 94, 1149, 1227, 1294, 1389
CviQI GTAC 3 cut(s) 202, 1246, 1411
DdeI CTNAG 2 cut(s) 493, 1134
DpnI GATC 7 cut(s) 289, 362, 527, 576, 674, 926, 1121
DpnII GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
DraI TTTAAA 1 cut(s) 60
EaeI YGGCCR 3 cut(s) 585, 1273, 1363
Eam1104I CTCTTC 3 cut(s) 374, 759, 861
EarI CTCTTC 3 cut(s) 374, 759, 861
Eco130I CCWWGG 4 cut(s) 308, 588, 1293, 1388
Eco47I GGWCC 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 1029
EcoRII CCWGG 6 cut(s) 216, 224, 920, 1025, 1152, 1347
EcoT14I CCWWGG 4 cut(s) 308, 588, 1293, 1388
EcoT22I ATGCAT 1 cut(s) 688
ErhI CCWWGG 4 cut(s) 308, 588, 1293, 1388
FaeI CATG 5 cut(s) 97, 1152, 1230, 1297, 1392
FatI CATG 5 cut(s) 93, 1148, 1226, 1293, 1388
FauI CCCGC 2 cut(s) 527, 1407
Fnu4HI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1451, 1460
FokI GGATG 6 cut(s) 242, 379, 578, 676, 1310, 1339
Fsp4HI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1451, 1460
FspBI CTAG 3 cut(s) 309, 413, 1383
GlaI GCGC 2 cut(s) 1403, 1405
GluI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1451, 1460
GsuI CTGGAG 2 cut(s) 673, 904
HaeIII GGCC 7 cut(s) 324, 482, 587, 724, 1275, 1305, 1365
HgaI GACGC 2 cut(s) 240, 429
HhaI GCGC 2 cut(s) 1404, 1406
Hin1II CATG 5 cut(s) 97, 1152, 1230, 1297, 1392
Hin6I GCGC 2 cut(s) 1402, 1404
HinP1I GCGC 2 cut(s) 1402, 1404
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HphI GGTGA 4 cut(s) 220, 472, 784, 1213
Hpy166II GTNNAC 6 cut(s) 125, 175, 445, 788, 845, 1411
Hpy188I TCNGA 5 cut(s) 397, 694, 706, 908, 916
Hpy188III TCNNGA 5 cut(s) 94, 358, 652, 1082, 1109
Hpy8I GTNNAC 6 cut(s) 125, 175, 445, 788, 845, 1411
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 5 cut(s) 314, 493, 629, 1192, 1249
HpyCH4III ACNGT 5 cut(s) 238, 815, 849, 1250, 1282
HpyCH4IV ACGT 2 cut(s) 348, 701
HpyCH4V TGCA 6 cut(s) 102, 175, 294, 317, 686, 1462
HpyF10VI GCNNNNNNNGC 4 cut(s) 1166, 1220, 1456, 1459
HpyF3I CTNAG 2 cut(s) 493, 1134
HpySE526I ACGT 2 cut(s) 348, 701
Hsp92II CATG 5 cut(s) 97, 1152, 1230, 1297, 1392
HspAI GCGC 2 cut(s) 1402, 1404
KspI CCGCGG 1 cut(s) 258
Kzo9I GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 2 cut(s) 1102, 1401
Lsp1109I GCAGC 5 cut(s) 173, 208, 1059, 1437, 1446
LweI GCATC 4 cut(s) 173, 673, 695, 1361
MaeI CTAG 3 cut(s) 309, 413, 1383
MaeII ACGT 2 cut(s) 348, 701
MaeIII GTNAC 7 cut(s) 208, 506, 601, 767, 1138, 1256, 1282
MalI GATC 7 cut(s) 289, 362, 527, 576, 674, 926, 1121
MboI GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
MboII GAAGA 5 cut(s) 284, 391, 509, 746, 878
MflI RGATCY 5 cut(s) 287, 360, 574, 672, 924
MhlI GDGCHC 3 cut(s) 177, 639, 1239
MlsI TGGCCA 2 cut(s) 587, 1365
MluCI AATT 7 cut(s) 338, 647, 775, 901, 1104, 1162, 1331
MluNI TGGCCA 2 cut(s) 587, 1365
MlyI GAGTC 7 cut(s) 130, 563, 783, 903, 911, 983, 1213
MmeI TCCRAC 7 cut(s) 376, 550, 582, 729, 931, 939, 1019
MnlI CCTC 8 cut(s) 262, 410, 521, 648, 1013, 1129, 1380, 1386
Mox20I TGGCCA 2 cut(s) 587, 1365
Mph1103I ATGCAT 1 cut(s) 688
MscI TGGCCA 2 cut(s) 587, 1365
MseI TTAA 3 cut(s) 59, 969, 1320
MslI CAYNNNNRTG 1 cut(s) 947
Msp20I TGGCCA 2 cut(s) 587, 1365
MspA1I CMGCKG 2 cut(s) 257, 522
MspR9I CCNGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
MvnI CGCG 4 cut(s) 257, 423, 1402, 1404
MwoI GCNNNNNNNGC 4 cut(s) 1166, 1220, 1456, 1459
NcoI CCATGG 2 cut(s) 1293, 1388
NdeII GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
NlaIII CATG 5 cut(s) 97, 1152, 1230, 1297, 1392
NlaIV GGNNCC 2 cut(s) 1031, 1397
NmuCI GTSAC 2 cut(s) 208, 1256
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 1152
NspV TTCGAA 1 cut(s) 435
PaeI GCATGC 1 cut(s) 1152
PagI TCATGA 1 cut(s) 93
PauI GCGCGC 1 cut(s) 1402
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 452, 1022, 1429
PflFI GACNNNGTC 1 cut(s) 743
PfoI TCCNGGA 2 cut(s) 920, 1025
PkrI GCNGC 7 cut(s) 188, 223, 425, 826, 1049, 1452, 1461
PleI GAGTC 7 cut(s) 129, 562, 783, 903, 911, 983, 1212
PpsI GAGTC 7 cut(s) 129, 562, 783, 903, 911, 983, 1212
PpuMI RGGWCCY 1 cut(s) 1029
PshBI ATTAAT 1 cut(s) 1320
Psp5II RGGWCCY 1 cut(s) 1029
Psp6I CCWGG 6 cut(s) 216, 224, 920, 1025, 1152, 1347
PspGI CCWGG 6 cut(s) 216, 224, 920, 1025, 1152, 1347
PspN4I GGNNCC 2 cut(s) 1031, 1397
PspPI GGNCC 1 cut(s) 1029
PspPPI RGGWCCY 1 cut(s) 1029
PsuI RGATCY 5 cut(s) 287, 360, 574, 672, 924
PsyI GACNNNGTC 1 cut(s) 743
PteI GCGCGC 1 cut(s) 1402
RsaI GTAC 3 cut(s) 203, 1247, 1412
RsaNI GTAC 3 cut(s) 202, 1246, 1411
RseI CAYNNNNRTG 1 cut(s) 947
SacII CCGCGG 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 3 cut(s) 59, 969, 1320
SatI GCNGC 7 cut(s) 187, 222, 424, 825, 1048, 1451, 1460
Sau3AI GATC 7 cut(s) 287, 360, 525, 574, 672, 924, 1119
Sau96I GGNCC 1 cut(s) 1029
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 7 cut(s) 130, 563, 783, 903, 911, 983, 1213
ScrFI CCNGG 6 cut(s) 218, 226, 922, 1027, 1154, 1349
SduI GDGCHC 3 cut(s) 177, 639, 1239
SfaNI GCATC 4 cut(s) 173, 673, 695, 1361
Sfr303I CCGCGG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 435
SgrBI CCGCGG 1 cut(s) 258
SinI GGWCC 1 cut(s) 1029
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SphI GCATGC 1 cut(s) 1152
Sse9I AATT 7 cut(s) 338, 647, 775, 901, 1104, 1162, 1331
SsiI CCGC 8 cut(s) 255, 257, 423, 520, 783, 825, 1013, 1400
SspMI CTAG 3 cut(s) 309, 413, 1383
StyD4I CCNGG 6 cut(s) 216, 224, 920, 1025, 1152, 1347
StyI CCWWGG 4 cut(s) 308, 588, 1293, 1388
TaaI ACNGT 5 cut(s) 238, 815, 849, 1250, 1282
TaiI ACGT 2 cut(s) 351, 704
TaqI TCGA 5 cut(s) 435, 528, 552, 1083, 1122
TasI AATT 7 cut(s) 338, 647, 775, 901, 1104, 1162, 1331
TatI WGTACW 2 cut(s) 201, 1410
TauI GCSGC 2 cut(s) 426, 827
TfiI GAWTC 3 cut(s) 452, 1022, 1429
Tru1I TTAA 3 cut(s) 59, 969, 1320
Tru9I TTAA 3 cut(s) 59, 969, 1320
TscAI CASTG 2 cut(s) 1273, 1318
TseFI GTSAC 2 cut(s) 208, 1256
TseI GCWGC 5 cut(s) 186, 221, 1047, 1450, 1459
Tsp45I GTSAC 2 cut(s) 208, 1256
TspDTI ATGAA 5 cut(s) 82, 110, 1044, 1211, 1215
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 2 cut(s) 1273, 1318
Tth111I GACNNNGTC 1 cut(s) 743
VneI GTGCAC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 1029
VspI ATTAAT 1 cut(s) 1320
XapI RAATTY 3 cut(s) 647, 775, 1331
XceI RCATGY 1 cut(s) 1152
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 3 cut(s) 309, 413, 1383
ZrmI AGTACT 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.