Rorug05G0418700

Agglutinin domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
58299139 .. 58299549
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0418700.1

Sequence Viewer

Length: 411 bp
ATGGCTTCCATTTTTCCATTATTTCTCTTGTTCTCTTCTCTCACCCTTCTCTCCATTGCTGGTGCTCAGGAAAGAGCTCCTCATGGACTAGCCAAAGAGAACCCAATGGCATTTTCGCCAACAGCGTATGATTTTTTTCATCCAAACTCAAAAAACCCAGTTGCTAAAGACCCGTGTGTTGCTTCCAAATGCTCGCCATTGCCTATTGCAGCCCATGTCGAAGCAACTGAAGGTCATGAGAGCAGATTTTCTGGCTCACAGAATGGCAAGACAAGGGTTGGAGCTGGTGGCATTGCAGGCATTGTGTTCGGTTTAGGATTTGTGGTGTTTCTGGCGATGGGCGTTTACTATGTGATTGTCGCACGCAGAACAAAAATGACTCGGGCTAATACTGTTAAACCTGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

136

Amino Acids

14.44

Weight (kDa)

9.51

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 249
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 2 cut(s) 77, 284
AluI AGCT 2 cut(s) 77, 284
Alw21I GWGCWC 2 cut(s) 67, 79
Ama87I CYCGRG 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 381
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 67, 79
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BfaI CTAG 1 cut(s) 89
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 3 cut(s) 54, 197, 291
BseGI GGATG 1 cut(s) 139
BseMI GCAATG 3 cut(s) 54, 197, 291
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 221
BsiHKAI GWGCWC 2 cut(s) 67, 79
BsiHKCI CYCGRG 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 67, 79
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 235
BsrDI GCAATG 3 cut(s) 54, 197, 291
BsrI ACTGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 194, 298, 364
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 194, 298, 364
CciI TCATGA 1 cut(s) 235
CviAII CATG 3 cut(s) 83, 215, 236
CviJI RGCY 7 cut(s) 5, 77, 92, 212, 255, 284, 386
CviKI_1 RGCY 7 cut(s) 5, 77, 92, 212, 255, 284, 386
DdeI CTNAG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 3 cut(s) 86, 218, 239
FaiI YATR 6 cut(s) 84, 129, 216, 237, 351, 409
FatI CATG 3 cut(s) 82, 214, 235
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 210
Hin1II CATG 3 cut(s) 86, 218, 239
HinfI GANTC 1 cut(s) 379
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 68, 236
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 56, 224
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 209, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 3 cut(s) 86, 218, 239
LmnI GCTCC 2 cut(s) 82, 281
LpnPI CCDG 7 cut(s) 45, 53, 171, 237, 270, 282, 317
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 1 cut(s) 89
MboII GAAGA 1 cut(s) 27
MhlI GDGCHC 2 cut(s) 67, 79
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 1 cut(s) 90
MseI TTAA 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 297
NlaIII CATG 3 cut(s) 86, 218, 239
PagI TCATGA 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 210
SchI GAGTC 1 cut(s) 373
SduI GDGCHC 2 cut(s) 67, 79
SetI ASST 4 cut(s) 79, 235, 286, 403
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 1 cut(s) 79
TaaI ACNGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 219
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 128
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.