Rmu_sc0003462.1_g000003

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003462.1
OG0000217
Physical Location & Seq
Reverse (-)
13378 .. 13887
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003462.1_g000003.1.cds

Sequence Viewer

Length: 510 bp
atggcagggcttccaagatttgtagtgctaaaatccttgaaccacaaatgcttgtgtttaacaaaaaatgttccaaatgagccagcagggttcatgaagtgcattagagaacaagttgtgagtccacaggcaaagtttgaagtggagatggcaaagactgggaatggaatggtgcacataagatgctgctacaacaacaagtactgggtgacaaaccaggctgccagggatgatacagtttggatagttgcgtccgcggacaaaccagaggaagaccaatcaaaaagctcctgcaccttgttcaagcctaggtttgcagaaggccaaacacaagtccgatttatccacgtccaactccggatctccgtatccttgtggaagagtgctactacatccgagaatgccttatatctaggaggaagcggcgatgttttcgaagttgttgactgggaatcgctggtgatacttcccccacgggtggccttcaaatccttagaagatggcagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

169

Amino Acids

18.91

Weight (kDa)

8.21

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 357
AciI CCGC 3 cut(s) 255, 257, 423
AclWI GGATC 1 cut(s) 368
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 4 cut(s) 40, 140, 304, 487
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 2 cut(s) 216, 224
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 177
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 1 cut(s) 368
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 2 cut(s) 322, 480
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 186, 221
AspA2I CCTAGG 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 220, 472
AsuII TTCGAA 1 cut(s) 435
AvrII CCTAGG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 173, 208
BccI CCATC 2 cut(s) 142, 494
BciT130I CCWGG 2 cut(s) 218, 226
BciVI GTATCC 1 cut(s) 379
BfaI CTAG 2 cut(s) 309, 413
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 3 cut(s) 187, 222, 424
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 3 cut(s) 188, 223, 425
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 218, 226
BmgBI CACGTC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 218, 226
BmrI ACTGGG 3 cut(s) 168, 214, 457
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 3 cut(s) 168, 214, 457
BpiI GAAGAC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 225, 255, 308, 473
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 3 cut(s) 163, 209, 452
BseAI TCCGGA 1 cut(s) 357
BseBI CCWGG 2 cut(s) 218, 226
BseDI CCNNGG 4 cut(s) 225, 255, 308, 473
BseGI GGATG 2 cut(s) 235, 392
BseLI CCNNNNNNNGG 1 cut(s) 478
BseNI ACTGG 3 cut(s) 163, 209, 452
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 2 cut(s) 173, 208
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 2 cut(s) 324, 482
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 478
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 2 cut(s) 324, 482
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 177
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 3 cut(s) 255, 257, 423
BspANI GGCC 2 cut(s) 324, 482
BspEI TCCGGA 1 cut(s) 357
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 93
BspPI GGATC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 435
BsrI ACTGG 3 cut(s) 163, 209, 452
BssECI CCNNGG 4 cut(s) 225, 255, 308, 473
BssMI GATC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 218, 226
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 493
BstDSI CCRYGG 2 cut(s) 255, 473
BstF5I GGATG 2 cut(s) 235, 392
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 1 cut(s) 363
BstMBI GATC 1 cut(s) 360
BstNI CCWGG 2 cut(s) 218, 226
BstSCI CCNGG 2 cut(s) 216, 224
BstSLI GKGCMC 1 cut(s) 177
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 173, 208
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 324, 482
BtgI CCRYGG 2 cut(s) 255, 473
BtgZI GCGATG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 235, 392
Cac8I GCNNGC 1 cut(s) 84
CciI TCATGA 1 cut(s) 93
Cfr42I CCGCGG 1 cut(s) 258
CseI GACGC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 10, 82, 221, 288, 307, 324, 482
CviKI_1 RGCY 7 cut(s) 10, 82, 221, 288, 307, 324, 482
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 493
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 216, 224
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 179, 409
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 187, 222, 424
FokI GGATG 2 cut(s) 242, 379
Fsp4HI GCNGC 3 cut(s) 187, 222, 424
FspBI CTAG 2 cut(s) 309, 413
GluI GCNGC 3 cut(s) 187, 222, 424
HaeIII GGCC 2 cut(s) 324, 482
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 97
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 2 cut(s) 121, 452
HpaII CCGG 1 cut(s) 358
HphI GGTGA 2 cut(s) 220, 472
Hpy166II GTNNAC 3 cut(s) 125, 175, 445
Hpy188I TCNGA 2 cut(s) 338, 397
Hpy188III TCNNGA 2 cut(s) 94, 358
Hpy8I GTNNAC 3 cut(s) 125, 175, 445
HpyAV CCTTC 2 cut(s) 314, 493
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 102, 175, 294, 317
HpyF3I CTNAG 1 cut(s) 493
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 357
KspI CCGCGG 1 cut(s) 258
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 2 cut(s) 173, 208
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 309, 413
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 3 cut(s) 284, 391, 509
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 2 cut(s) 262, 410
MroI TCCGGA 1 cut(s) 357
MseI TTAA 2 cut(s) 59, 508
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 2 cut(s) 218, 226
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 2 cut(s) 218, 226
MvnI CGCG 1 cut(s) 257
NdeII GATC 1 cut(s) 360
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 208
NspV TTCGAA 1 cut(s) 435
PagI TCATGA 1 cut(s) 93
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 3 cut(s) 188, 223, 425
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 216, 224
PspGI CCWGG 2 cut(s) 216, 224
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SacII CCGCGG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 59, 508
SatI GCNGC 3 cut(s) 187, 222, 424
Sau3AI GATC 1 cut(s) 360
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 218, 226
SduI GDGCHC 1 cut(s) 177
SetI ASST 4 cut(s) 290, 299, 314, 351
SfaNI GCATC 1 cut(s) 173
Sfr303I CCGCGG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 435
SgrBI CCGCGG 1 cut(s) 258
SsiI CCGC 3 cut(s) 255, 257, 423
SspMI CTAG 2 cut(s) 309, 413
StyD4I CCNGG 2 cut(s) 216, 224
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 435
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 2 cut(s) 59, 508
Tru9I TTAA 2 cut(s) 59, 508
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 2 cut(s) 186, 221
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 82, 110
TspGWI ACGGA 1 cut(s) 355
VneI GTGCAC 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 2 cut(s) 309, 413
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.