Rmu_sc0030660.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030660.1
OG0000217
Physical Location & Seq
Reverse (-)
2 .. 585
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030660.1_g000001.1.cds

Sequence Viewer

Length: 584 bp
atgtcgttcctattaccacccactattgcactcaggttccccagtttcaacgactcctacttgatttacaggaatgattctgattccgagaggcgtggctttctcagagtcagcggatccaatgtcttcagcccattagcaaagttcgaagtggtgacggccaatactgggaatggactagtacatatcagatgctctcataacagaaagttcctgcgaagatttgagaatgatctgtaccttactccggaggctgatgaaccagaggaggaccaatccaaatggtcgtgtacattatttgagcctctatttgctgaagatggcaaccccgacaaagcccggttgttccatgtccaatcaaaaaattatgcaacgccatgggtctacacagttggagcagtaagcgtcttgggattagtttggaatccggctccacagaatatcttcgatatcatcgacttgaagtcattggtgatattgccaaagcatgtggctttcaaaggcgacaacggcaattaccttatggcggaagctacgacgacgtcgaacccgaccttctcgtccactgacaaggggaggcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

194

Amino Acids

21.87

Weight (kDa)

6.08

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 559
AatII GACGTC 1 cut(s) 545
AccI GTMKAC 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 2 cut(s) 114, 527
AclWI GGATC 2 cut(s) 111, 124
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 2 cut(s) 112, 336
AcyI GRCGYC 1 cut(s) 542
AfaI GTAC 3 cut(s) 183, 239, 292
AfiI CCNNNNNNNGG 3 cut(s) 168, 247, 526
AgsI TTSAA 3 cut(s) 49, 463, 499
AhdI GACNNNNNGTC 1 cut(s) 463
AhlI ACTAGT 1 cut(s) 178
AluBI AGCT 1 cut(s) 533
AluI AGCT 1 cut(s) 533
AlwI GGATC 2 cut(s) 111, 124
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 2 cut(s) 159, 578
Asp700I GAANNNNTTC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 166, 484
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 118
BccI CCATC 1 cut(s) 314
BceAI ACGGC 2 cut(s) 174, 526
BcnI CCSGG 1 cut(s) 340
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 38, 118, 432
BmrFI CCNGG 1 cut(s) 340
BmrI ACTGGG 2 cut(s) 36, 177
BmsI GCATC 1 cut(s) 182
BmuI ACTGGG 2 cut(s) 36, 177
BpiI GAAGAC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 247, 526
Bse1I ACTGG 2 cut(s) 42, 172
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 168, 247, 526
BseMII CTCAG 2 cut(s) 46, 118
BseNI ACTGG 2 cut(s) 42, 172
BseRI GAGGAG 1 cut(s) 281
BshFI GGCC 2 cut(s) 161, 580
BsiSI CCGG 3 cut(s) 248, 340, 428
BslI CCNNNNNNNGG 3 cut(s) 168, 247, 526
BsnI GGCC 2 cut(s) 161, 580
Bsp119I TTCGAA 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 2 cut(s) 116, 232
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 2 cut(s) 114, 527
BspANI GGCC 2 cut(s) 161, 580
BspCNI CTCAG 2 cut(s) 45, 117
BspEI TCCGGA 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 38, 118, 432
BspPI GGATC 2 cut(s) 111, 124
BspT104I TTCGAA 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 2 cut(s) 42, 172
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 2 cut(s) 116, 232
BssNI GRCGYC 1 cut(s) 542
BssT1I CCWWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 391
BstACI GRCGYC 1 cut(s) 542
BstAUI TGTACA 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 32, 104
BstDSI CCRYGG 1 cut(s) 377
BstKTI GATC 2 cut(s) 119, 235
BstMBI GATC 2 cut(s) 116, 232
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 338
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 161, 580
BtgI CCRYGG 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 394
Csp6I GTAC 3 cut(s) 182, 238, 291
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 3 cut(s) 350, 378, 488
CviQI GTAC 3 cut(s) 182, 238, 291
DdeI CTNAG 2 cut(s) 32, 104
DpnI GATC 2 cut(s) 118, 234
DpnII GATC 2 cut(s) 116, 232
DrdI GACNNNNNNGTC 1 cut(s) 559
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 463
EciI GGCGGA 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 377
Eco147I AGGCCT 1 cut(s) 580
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 112, 336
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 3 cut(s) 353, 381, 491
FaiI YATR 7 cut(s) 186, 201, 351, 369, 379, 489, 524
FatI CATG 3 cut(s) 349, 377, 487
FblI GTMKAC 1 cut(s) 384
FspBI CTAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 161, 580
HapII CCGG 3 cut(s) 248, 340, 428
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 3 cut(s) 353, 381, 491
HinfI GANTC 5 cut(s) 53, 77, 83, 108, 424
HpaII CCGG 3 cut(s) 248, 340, 428
HphI GGTGA 2 cut(s) 166, 484
Hpy166II GTNNAC 3 cut(s) 291, 385, 564
Hpy188I TCNGA 4 cut(s) 82, 88, 107, 191
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 3 cut(s) 291, 385, 564
Hpy99I CGWCG 3 cut(s) 541, 544, 547
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 2 cut(s) 29, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 2 cut(s) 32, 104
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 3 cut(s) 353, 381, 491
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 116, 232
LmnI GCTCC 2 cut(s) 395, 436
LpnPI CCDG 9 cut(s) 19, 55, 55, 153, 227, 261, 276, 353, 441
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 118, 234
MboI GATC 2 cut(s) 116, 232
MboII GAAGA 4 cut(s) 118, 231, 329, 436
MflI RGATCY 1 cut(s) 116
MluCI AATT 2 cut(s) 364, 514
MlyI GAGTC 2 cut(s) 47, 117
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 6 cut(s) 84, 244, 259, 262, 315, 570
MroI TCCGGA 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 3 cut(s) 248, 340, 428
MspR9I CCNGG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 510
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 1 cut(s) 377
NdeII GATC 2 cut(s) 116, 232
NlaIII CATG 3 cut(s) 353, 381, 491
NlaIV GGNNCC 3 cut(s) 38, 118, 432
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 491
NspV TTCGAA 1 cut(s) 147
PceI AGGCCT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 3 cut(s) 453, 542, 548
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 3 cut(s) 77, 83, 424
PflFI GACNNNGTC 1 cut(s) 541
PleI GAGTC 2 cut(s) 47, 116
PpsI GAGTC 2 cut(s) 47, 116
PspN4I GGNNCC 3 cut(s) 38, 118, 432
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 3 cut(s) 183, 239, 292
RsaNI GTAC 3 cut(s) 182, 238, 291
Sau3AI GATC 2 cut(s) 116, 232
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 47, 117
ScrFI CCNGG 1 cut(s) 340
SetI ASST 6 cut(s) 38, 243, 522, 535, 545, 557
SfaNI GCATC 1 cut(s) 182
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 271
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 2 cut(s) 364, 514
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 2 cut(s) 114, 527
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 545
TaqI TCGA 4 cut(s) 147, 447, 456, 545
TasI AATT 2 cut(s) 364, 514
TatI WGTACW 2 cut(s) 181, 290
TfiI GAWTC 3 cut(s) 77, 83, 424
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 571
Tth111I GACNNNGTC 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 271
XceI RCATGY 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 1 cut(s) 179
ZraI GACGTC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.