Rmu_sc0016133.1_g000002

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016133.1
OG0000217
Physical Location & Seq
Forward (+)
9534 .. 10067
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016133.1_g000002.1.cds

Sequence Viewer

Length: 534 bp
atgacggaggtcgagattaatagaacagagaatccgagtgatgaaaccacattaccaagatttgtggttctgaaatcaaacaacaacaacaaatacttgagctacacaaagattaatgaggaaaatgttgatcaggtgcccatagggcttctcaaattctctggagaagaagtcgggagccattatgcaaagttcgaagtggagacggcaaagagtagtgagaaccagggactagtccacataagatgctgtcacaacaacaaatattgggtaaggttgcttgaaataaatacgtcaaaccatgatcattggatcgttgagcgagctgaggagccagaggaagaccgcaccaagagctcgtgtaccttgtttgagcctattgtcaccatagaagaattaaatgatctaactattgacgaagagaacgatgatgatgccatcagcgatggtgagaatgatgataccgaacaacatcaaaatcaggaagtcatcgatactcatccagatcctgcttcaagatcacgatgccactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

177

Amino Acids

20.41

Weight (kDa)

4.51

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 1 cut(s) 346
AclWI GGATC 2 cut(s) 320, 500
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 2 cut(s) 284, 516
AhlI ACTAGT 1 cut(s) 232
AjnI CCWGG 1 cut(s) 225
AloI GAACNNNNNNTCC 2 cut(s) 16, 48
AluBI AGCT 3 cut(s) 102, 326, 357
AluI AGCT 3 cut(s) 102, 326, 357
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 320, 500
AlwNI CAGNNNCTG 1 cut(s) 509
ApoI RAATTY 1 cut(s) 155
AseI ATTAAT 2 cut(s) 18, 114
AsuHPI GGTGA 2 cut(s) 376, 461
AsuII TTCGAA 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 359
BauI CACGAG 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 327
BccI CCATC 2 cut(s) 440, 446
BceAI ACGGC 1 cut(s) 222
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 227
BclI TGATCA 2 cut(s) 130, 304
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 1 cut(s) 233
BglI GCCNNNNNGGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 227
BmiI GGNNCC 3 cut(s) 138, 179, 333
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 3 cut(s) 236, 424, 515
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 492
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 498
BseMII CTCAG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 359
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 2 cut(s) 141, 359
Bsp143I GATC 6 cut(s) 130, 304, 312, 403, 505, 518
BspACI CCGC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 138, 179, 333
BspPI GGATC 2 cut(s) 320, 500
BspT104I TTCGAA 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 6 cut(s) 130, 304, 312, 403, 505, 518
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 499
BstKTI GATC 6 cut(s) 133, 307, 315, 406, 508, 521
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 6 cut(s) 130, 304, 312, 403, 505, 518
BstMWI GCNNNNNNNGC 2 cut(s) 145, 354
BstNI CCWGG 1 cut(s) 227
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 492
BsuTUI ATCGAT 1 cut(s) 492
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 509
ClaI ATCGAT 1 cut(s) 492
Csp6I GTAC 1 cut(s) 363
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 102, 148, 180, 326, 334, 357, 376
CviKI_1 RGCY 7 cut(s) 102, 148, 180, 326, 334, 357, 376
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 327
DpnI GATC 6 cut(s) 132, 306, 314, 405, 507, 520
DpnII GATC 6 cut(s) 130, 304, 312, 403, 505, 518
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 143, 186, 242, 303, 389
FaqI GGGAC 1 cut(s) 243
FatI CATG 1 cut(s) 301
FbaI TGATCA 2 cut(s) 130, 304
FokI GGATG 1 cut(s) 486
FriOI GRGCYC 1 cut(s) 359
FspBI CTAG 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 183
Hin1II CATG 1 cut(s) 305
HinfI GANTC 1 cut(s) 31
HphI GGTGA 2 cut(s) 376, 461
Hpy166II GTNNAC 2 cut(s) 238, 363
Hpy188I TCNGA 2 cut(s) 36, 72
Hpy188III TCNNGA 7 cut(s) 13, 162, 175, 482, 503, 516, 522
Hpy8I GTNNAC 2 cut(s) 238, 363
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 354
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 1 cut(s) 305
Ksp22I TGATCA 2 cut(s) 130, 304
Kzo9I GATC 6 cut(s) 130, 304, 312, 403, 505, 518
LmnI GCTCC 2 cut(s) 177, 331
LpnPI CCDG 8 cut(s) 119, 147, 212, 239, 348, 467, 516, 522
LweI GCATC 3 cut(s) 236, 424, 515
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 251, 382
MalI GATC 6 cut(s) 132, 306, 314, 405, 507, 520
MboI GATC 6 cut(s) 130, 304, 312, 403, 505, 518
MboII GAAGA 4 cut(s) 179, 353, 404, 431
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 2 cut(s) 141, 359
MluCI AATT 2 cut(s) 155, 395
MnlI CCTC 3 cut(s) 112, 322, 331
MseI TTAA 3 cut(s) 18, 114, 398
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 145, 354
NdeII GATC 6 cut(s) 130, 304, 312, 403, 505, 518
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 3 cut(s) 138, 179, 333
NmuCI GTSAC 2 cut(s) 251, 382
NspV TTCGAA 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 8
PshBI ATTAAT 2 cut(s) 18, 114
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 138, 179, 333
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacI GAGCTC 1 cut(s) 359
SaqAI TTAA 3 cut(s) 18, 114, 398
Sau3AI GATC 6 cut(s) 130, 304, 312, 403, 505, 518
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 141, 359
SetI ASST 8 cut(s) 12, 104, 138, 278, 296, 328, 359, 368
SfaNI GCATC 3 cut(s) 236, 424, 515
SfuI TTCGAA 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SpeI ACTAGT 1 cut(s) 232
Sse9I AATT 2 cut(s) 155, 395
SsiI CCGC 1 cut(s) 346
SspI AATATT 1 cut(s) 266
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 296
TaqI TCGA 3 cut(s) 12, 195, 492
TasI AATT 2 cut(s) 155, 395
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 18, 114, 398
Tru9I TTAA 3 cut(s) 18, 114, 398
TseFI GTSAC 2 cut(s) 251, 382
Tsp45I GTSAC 2 cut(s) 251, 382
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 20
VspI ATTAAT 2 cut(s) 18, 114
XapI RAATTY 1 cut(s) 155
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.