FvH4_6g45591

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000217
Physical Location & Seq
Forward (+)
34969377 .. 34970348
972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45591.t1

Sequence Viewer

Length: 888 bp
ATGTCGTTCCAATTACCATCCATTTTTGCTCTCAGCTCACCCTGGTTCGACAACTACTACTTGAACTACAGCAATGATTCCGACTCCGAGGCGCTTGGCTTTCTCAAATTCAATGGAACGGATGCCTTGAGCTCGTTAGCAAAGTTCGAAGTCGTGAAGGCAAGTACCGGGACGGGACTAGTACACATACGATGCTCCCACAACAGAAAGTTCCTGCGAACGAGAATTAAAGCCGAAGATGGCAACCCTGACAAAGTCCATTTGTTCCATGTCGGAGAAAAACAATATGCAGTGGCATGGAACGAAGGTGTAGGCGAAAACAAAAAGTTCCTGAGACTTTTTGACACTCCTGGTCATCAAGGTGTCTTCGACATCACTAGCTTGGAGTCATTGGTGATACTACCATCCATTTTTGCGCTTAGCTCACCTTGGTTCGACAACTACTACTTGAACTACAGCAATGACTCTGATGCTGAGACGCTTGGTTTTATCAAGTTCAACGGAACTGATGCCACGAGCTCGTTAGCAAAGTTCGAAGCCGTGAAGGCTAGTGCTGGGACAAGACTAGTACATATACGATGCTCCCACAACGGAAAGTTCCTGCGAACGAGAAGTAAAGGTGATCCAAACCTATCTCCGGAGGCTGATGAACCTGAGGAGGACCAATCCAAATGGTCATGTACATTGTTTGAAGCTAAAGCAGCTGAAGATGGCAGCCCTAATAAAGTCCATTTGTTCCATGTCGGAGAAAAGCAATATGCAGTGGCATGGAACGAAGGTGAAGGCGAAAACAAGAAGTTCTTGAGACTTTTCGACTCTCCCGGTCATCAGGGTGTCTTCGATGTCACTAACTTGGAGTCATCGGTGATACCAGCTGGACCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

296

Amino Acids

32.74

Weight (kDa)

5.7

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 134 - 263 3.4e-11 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 637
AclWI GGATC 1 cut(s) 617
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 4 cut(s) 166, 183, 570, 682
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 5 cut(s) 64, 112, 451, 499, 692
AhlI ACTAGT 2 cut(s) 178, 565
AjnI CCWGG 2 cut(s) 41, 349
AluBI AGCT 8 cut(s) 36, 132, 381, 423, 519, 695, 704, 875
AluI AGCT 8 cut(s) 36, 132, 381, 423, 519, 695, 704, 875
Alw21I GWGCWC 2 cut(s) 134, 521
Alw26I GTCTC 3 cut(s) 328, 470, 799
AlwI GGATC 1 cut(s) 617
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 1 cut(s) 882
ApeKI GCWGC 2 cut(s) 701, 714
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 2 cut(s) 94, 418
AspS9I GGNCC 2 cut(s) 661, 878
AsuC2I CCSGG 2 cut(s) 169, 822
AsuHPI GGTGA 6 cut(s) 30, 406, 417, 632, 791, 877
AsuII TTCGAA 2 cut(s) 147, 534
AvaII GGWCC 2 cut(s) 661, 878
AxyI CCTNAGG 1 cut(s) 654
BanII GRGCYC 2 cut(s) 134, 521
BauI CACGAG 1 cut(s) 514
BbsI GAAGAC 2 cut(s) 358, 829
Bbv12I GWGCWC 2 cut(s) 134, 521
BbvI GCAGC 2 cut(s) 713, 726
BccI CCATC 4 cut(s) 25, 233, 412, 704
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 2 cut(s) 43, 351
BcnI CCSGG 2 cut(s) 169, 822
BcoDI GTCTC 3 cut(s) 328, 470, 799
BcuI ACTAGT 2 cut(s) 178, 565
BfaI CTAG 4 cut(s) 179, 378, 549, 566
BfmI CTRYAG 2 cut(s) 67, 454
BfoI RGCGCY 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 2 cut(s) 702, 715
BlpI GCTNAGC 1 cut(s) 419
BlsI GCNGC 2 cut(s) 703, 716
Bme1390I CCNGG 4 cut(s) 43, 169, 351, 822
Bme18I GGWCC 2 cut(s) 661, 878
BmgT120I GGNCC 2 cut(s) 661, 878
BmrFI CCNGG 4 cut(s) 43, 169, 351, 822
BmsI GCATC 5 cut(s) 112, 182, 460, 499, 569
BpiI GAAGAC 2 cut(s) 358, 829
Bpu1102I GCTNAGC 1 cut(s) 419
Bpu14I TTCGAA 2 cut(s) 147, 534
BpuEI CTTGAG 2 cut(s) 148, 823
BpuMI CCSGG 2 cut(s) 169, 822
BsaJI CCNNGG 3 cut(s) 41, 87, 428
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse118I RCCGGY 1 cut(s) 880
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 2 cut(s) 79, 466
BseAI TCCGGA 1 cut(s) 637
BseBI CCWGG 2 cut(s) 43, 351
BseDI CCNNGG 3 cut(s) 41, 87, 428
BseGI GGATG 3 cut(s) 17, 127, 404
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 2 cut(s) 79, 466
BseMII CTCAG 4 cut(s) 46, 323, 465, 645
BseRI GAGGAG 1 cut(s) 671
BseXI GCAGC 2 cut(s) 713, 726
BseYI CCCAGC 1 cut(s) 554
BshFI GGCC 1 cut(s) 884
BsiHKAI GWGCWC 2 cut(s) 134, 521
BsiSI CCGG 4 cut(s) 168, 638, 822, 881
BslFI GGGAC 3 cut(s) 184, 189, 571
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 3 cut(s) 328, 470, 799
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 3 cut(s) 184, 189, 571
BsnI GGCC 1 cut(s) 884
Bsp119I TTCGAA 2 cut(s) 147, 534
Bsp1286I GDGCHC 2 cut(s) 134, 521
Bsp13I TCCGGA 1 cut(s) 637
Bsp1407I TGTACA 1 cut(s) 680
Bsp143I GATC 1 cut(s) 622
Bsp1720I GCTNAGC 1 cut(s) 419
BspANI GGCC 1 cut(s) 884
BspCNI CTCAG 4 cut(s) 45, 324, 466, 646
BspEI TCCGGA 1 cut(s) 637
BspPI GGATC 1 cut(s) 617
BspT104I TTCGAA 2 cut(s) 147, 534
BsrDI GCAATG 2 cut(s) 79, 466
BsrFI RCCGGY 1 cut(s) 880
BsrGI TGTACA 1 cut(s) 680
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 3 cut(s) 41, 87, 428
BssMI GATC 1 cut(s) 622
BssSI CACGAG 1 cut(s) 514
BssT1I CCWWGG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 43, 351
BstAUI TGTACA 1 cut(s) 680
BstBI TTCGAA 2 cut(s) 147, 534
BstDEI CTNAG 5 cut(s) 32, 332, 419, 474, 654
BstF5I GGATG 3 cut(s) 17, 127, 404
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 418
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 3 cut(s) 328, 470, 799
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 3 cut(s) 545, 701, 881
BstNI CCWGG 2 cut(s) 43, 351
BstSCI CCNGG 4 cut(s) 41, 167, 349, 820
BstSFI CTRYAG 2 cut(s) 67, 454
BstV1I GCAGC 2 cut(s) 713, 726
BstV2I GAAGAC 2 cut(s) 358, 829
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 1 cut(s) 884
BtsCI GGATG 3 cut(s) 17, 127, 404
BtsI GCAGTG 2 cut(s) 297, 768
BtsIMutI CAGTG 2 cut(s) 297, 768
CfoI GCGC 2 cut(s) 94, 418
Cfr10I RCCGGY 1 cut(s) 880
Cfr13I GGNCC 2 cut(s) 661, 878
CseI GACGC 1 cut(s) 487
Csp6I GTAC 4 cut(s) 165, 182, 569, 681
CviAII CATG 5 cut(s) 269, 297, 678, 740, 768
CviQI GTAC 4 cut(s) 165, 182, 569, 681
DdeI CTNAG 5 cut(s) 32, 332, 419, 474, 654
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
Ecl136II GAGCTC 2 cut(s) 132, 519
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 2 cut(s) 134, 521
Eco47I GGWCC 2 cut(s) 661, 878
Eco53kI GAGCTC 2 cut(s) 132, 519
Eco57I CTGAAG 1 cut(s) 726
Eco81I CCTNAGG 1 cut(s) 654
EcoICRI GAGCTC 2 cut(s) 132, 519
EcoRII CCWGG 2 cut(s) 41, 349
EcoT14I CCWWGG 1 cut(s) 428
EcoT38I GRGCYC 2 cut(s) 134, 521
ErhI CCWWGG 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 5 cut(s) 272, 300, 681, 743, 771
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 3 cut(s) 184, 189, 571
FatI CATG 5 cut(s) 268, 296, 677, 739, 767
Fnu4HI GCNGC 2 cut(s) 702, 715
FokI GGATG 3 cut(s) 4, 134, 391
FriOI GRGCYC 2 cut(s) 134, 521
Fsp4HI GCNGC 2 cut(s) 702, 715
FspBI CTAG 4 cut(s) 179, 378, 549, 566
GlaI GCGC 2 cut(s) 93, 417
GluI GCNGC 2 cut(s) 702, 715
GsaI CCCAGC 1 cut(s) 558
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 1 cut(s) 884
HapII CCGG 4 cut(s) 168, 638, 822, 881
HgaI GACGC 1 cut(s) 487
HhaI GCGC 2 cut(s) 94, 418
Hin1II CATG 5 cut(s) 272, 300, 681, 743, 771
Hin6I GCGC 2 cut(s) 92, 416
HinP1I GCGC 2 cut(s) 92, 416
HinfI GANTC 6 cut(s) 77, 83, 386, 464, 815, 857
HpaII CCGG 4 cut(s) 168, 638, 822, 881
HphI GGTGA 6 cut(s) 30, 406, 417, 632, 791, 877
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 5 cut(s) 82, 88, 275, 469, 746
Hpy188III TCNNGA 4 cut(s) 154, 331, 638, 802
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 5 cut(s) 151, 299, 538, 770, 776
HpyCH4V TGCA 2 cut(s) 290, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 701, 881
HpyF3I CTNAG 5 cut(s) 32, 332, 419, 474, 654
Hsp92II CATG 5 cut(s) 272, 300, 681, 743, 771
HspAI GCGC 2 cut(s) 92, 416
Kpn2I TCCGGA 1 cut(s) 637
Kzo9I GATC 1 cut(s) 622
LmnI GCTCC 2 cut(s) 200, 587
Lsp1109I GCAGC 2 cut(s) 713, 726
LweI GCATC 5 cut(s) 112, 182, 460, 499, 569
MaeI CTAG 4 cut(s) 179, 378, 549, 566
MaeIII GTNAC 1 cut(s) 844
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MboII GAAGA 4 cut(s) 248, 358, 719, 829
MhlI GDGCHC 2 cut(s) 134, 521
MluCI AATT 3 cut(s) 11, 107, 225
MlyI GAGTC 5 cut(s) 77, 395, 458, 809, 866
MmeI TCCRAC 3 cut(s) 105, 253, 724
MnlI CCTC 4 cut(s) 82, 634, 649, 652
MroI TCCGGA 1 cut(s) 637
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 2 cut(s) 360, 831
MspA1I CMGCKG 2 cut(s) 704, 875
MspI CCGG 4 cut(s) 168, 638, 822, 881
MspR9I CCNGG 4 cut(s) 43, 169, 351, 822
MvaI CCWGG 2 cut(s) 43, 351
MwoI GCNNNNNNNGC 3 cut(s) 545, 701, 881
NciI CCSGG 2 cut(s) 169, 822
NdeII GATC 1 cut(s) 622
NlaIII CATG 5 cut(s) 272, 300, 681, 743, 771
NmuCI GTSAC 1 cut(s) 844
NspV TTCGAA 2 cut(s) 147, 534
PfeI GAWTC 1 cut(s) 77
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 703, 716
PleI GAGTC 5 cut(s) 77, 394, 458, 809, 865
PpsI GAGTC 5 cut(s) 77, 394, 458, 809, 865
Psp124BI GAGCTC 2 cut(s) 134, 521
Psp6I CCWGG 2 cut(s) 41, 349
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 2 cut(s) 41, 349
PspPI GGNCC 2 cut(s) 661, 878
PsyI GACNNNGTC 1 cut(s) 254
PvuII CAGCTG 2 cut(s) 704, 875
RsaI GTAC 4 cut(s) 166, 183, 570, 682
RsaNI GTAC 4 cut(s) 165, 182, 569, 681
RseI CAYNNNNRTG 2 cut(s) 360, 831
SacI GAGCTC 2 cut(s) 134, 521
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 702, 715
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 2 cut(s) 661, 878
SchI GAGTC 5 cut(s) 77, 395, 458, 809, 866
ScrFI CCNGG 4 cut(s) 43, 169, 351, 822
SduI GDGCHC 2 cut(s) 134, 521
SfaNI GCATC 5 cut(s) 112, 182, 460, 499, 569
SfcI CTRYAG 2 cut(s) 67, 454
SfuI TTCGAA 2 cut(s) 147, 534
SinI GGWCC 2 cut(s) 661, 878
SmiMI CAYNNNNRTG 2 cut(s) 360, 831
SmlI CTYRAG 2 cut(s) 127, 802
SmoI CTYRAG 2 cut(s) 127, 802
SpeI ACTAGT 2 cut(s) 178, 565
Sse9I AATT 3 cut(s) 11, 107, 225
SspMI CTAG 4 cut(s) 179, 378, 549, 566
SstI GAGCTC 2 cut(s) 134, 521
StyD4I CCNGG 4 cut(s) 41, 167, 349, 820
StyI CCWWGG 1 cut(s) 428
TaqI TCGA 7 cut(s) 48, 147, 369, 435, 534, 813, 840
TasI AATT 3 cut(s) 11, 107, 225
TatI WGTACW 3 cut(s) 181, 568, 680
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 297, 768
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 2 cut(s) 701, 714
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 1 cut(s) 663
TspGWI ACGGA 3 cut(s) 134, 516, 606
TspRI CASTG 2 cut(s) 297, 768
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 661, 878
XapI RAATTY 1 cut(s) 107
XspI CTAG 4 cut(s) 179, 378, 549, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.