Rorug01G0130700

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000217
Physical Location & Seq
Forward (+)
22148805 .. 22149260
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0130700.1

Sequence Viewer

Length: 456 bp
ATGGCCAATGAACAATGGGTTGTGGTGGGCGACACTTGGTGCATTGCAAGGTTGCACAGAGTCATCGAACCAGAAAAGGCCTTGCCCTGCATCAAGTTCTTAATGCATATTAATGCCACCATTCGTCAACTGCAGAAACAGCATGGTGACAATACAAGTTTCGATGACAACGACCAGGAAGATCTAATAGACATATTATTAGAAGAAGAAAACTGGAGCTCTAATGAGAAGGACATCACAATCGAACTCGAGTGTGACGACCCATATGACGTGAACATGGATGCAATATCTAAGGCCATTTCTCAACTGCAAGTGCCGTTACAGGCTCAGGAATCGTTGGTAGACACCATATTATTCCGGAGCTTCGAAAGTGCAAGAAACTGCGGTTCTTATGTAGATCGCAAGATTTTGCATATGGAGATCAATGTAGATCTTTATGTTGTTTCAGTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

151

Amino Acids

17.39

Weight (kDa)

4.37

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AccIII TCCGGA 1 cut(s) 357
AciI CCGC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 39
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 2 cut(s) 219, 363
AluI AGCT 2 cut(s) 219, 363
Alw21I GWGCWC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 3 cut(s) 3, 78, 294
AseI ATTAAT 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 366
AvaI CYCGRG 1 cut(s) 248
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 131
BglII AGATCT 2 cut(s) 181, 430
Bme1390I CCNGG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 248
BmgBI CACGTC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 99, 271
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 357
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 218
BshFI GGCC 3 cut(s) 5, 80, 296
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 358
BsnI GGCC 3 cut(s) 5, 80, 296
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 4 cut(s) 181, 397, 420, 430
BspACI CCGC 1 cut(s) 384
BspANI GGCC 3 cut(s) 5, 80, 296
BspCNI CTCAG 1 cut(s) 340
BspEI TCCGGA 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 218
BssMI GATC 4 cut(s) 181, 397, 420, 430
Bst2UI CCWGG 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 291, 327
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 4 cut(s) 184, 400, 423, 433
BstMBI GATC 4 cut(s) 181, 397, 420, 430
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 131
BstX2I RGATCY 2 cut(s) 181, 430
BstYI RGATCY 2 cut(s) 181, 430
BsuRI GGCC 3 cut(s) 5, 80, 296
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 286
CviAII CATG 2 cut(s) 143, 277
CviJI RGCY 6 cut(s) 5, 80, 219, 296, 326, 363
CviKI_1 RGCY 6 cut(s) 5, 80, 219, 296, 326, 363
DdeI CTNAG 2 cut(s) 291, 327
DpnI GATC 4 cut(s) 183, 399, 422, 432
DpnII GATC 4 cut(s) 181, 397, 420, 430
DraIII CACNNNGTG 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 219
Eco147I AGGCCT 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 2 cut(s) 146, 280
FatI CATG 2 cut(s) 142, 276
FauNDI CATATG 2 cut(s) 265, 414
FblI GTMKAC 1 cut(s) 342
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 3 cut(s) 5, 80, 296
HapII CCGG 1 cut(s) 358
Hin1II CATG 2 cut(s) 146, 280
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 2 cut(s) 60, 332
HpaII CCGG 1 cut(s) 358
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 128, 274, 343
Hpy188III TCNNGA 2 cut(s) 329, 358
Hpy8I GTNNAC 3 cut(s) 128, 274, 343
HpyAV CCTTC 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 291, 327
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 146, 280
Kpn2I TCCGGA 1 cut(s) 357
Kzo9I GATC 4 cut(s) 181, 397, 420, 430
LmnI GCTCC 2 cut(s) 216, 360
LpnPI CCDG 8 cut(s) 84, 100, 161, 188, 199, 308, 314, 371
LweI GCATC 2 cut(s) 99, 271
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 146, 254, 318
MalI GATC 4 cut(s) 183, 399, 422, 432
MboI GATC 4 cut(s) 181, 397, 420, 430
MboII GAAGA 3 cut(s) 191, 215, 218
MflI RGATCY 2 cut(s) 181, 430
MhlI GDGCHC 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 69
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 108
MroI TCCGGA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 101, 111
MslI CAYNNNNRTG 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeI CATATG 2 cut(s) 265, 414
NdeII GATC 4 cut(s) 181, 397, 420, 430
NlaIII CATG 2 cut(s) 146, 280
NmuCI GTSAC 2 cut(s) 146, 254
NsiI ATGCAT 1 cut(s) 108
NspV TTCGAA 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 248
PceI AGGCCT 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 255
PfeI GAWTC 1 cut(s) 332
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PshBI ATTAAT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 2 cut(s) 181, 430
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 101, 111
Sau3AI GATC 4 cut(s) 181, 397, 420, 430
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 221
SetI ASST 4 cut(s) 53, 221, 273, 365
SfaNI GCATC 2 cut(s) 99, 271
SfcI CTRYAG 1 cut(s) 131
Sfr274I CTCGAG 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 366
SlaI CTCGAG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 1 cut(s) 384
SstI GAGCTC 1 cut(s) 221
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 174
TaiI ACGT 1 cut(s) 273
TaqI TCGA 5 cut(s) 66, 162, 243, 249, 366
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 101, 111
Tru9I TTAA 2 cut(s) 101, 111
TseFI GTSAC 2 cut(s) 146, 254
Tsp45I GTSAC 2 cut(s) 146, 254
TspDTI ATGAA 1 cut(s) 24
VspI ATTAAT 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.