Rh1DG158500

Agglutinin domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
32811733 .. 32814146
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG158500.1

Sequence Viewer

Length: 2043 bp
ATGACAGAGGGCGAGATTAATAGAACAGAGAATCCGAGTGATGAAACCACATTACCAAGATTTGTGGTTCTGAAATCAAACAACAACAACAAATACTTGAGCTACACAAAGATTAATGAAGAAAATGTTGATCAGGTTCCCATGGGGCTTCTCAAATTCTCTGGAGAAGAAGTCGGGAGCCATTATGCAAAGTTCGAAGTGGAGACGGCAAAGAGTAGTGAGAACCAGGGACTAGTCCACATAAGATGCTGCCACAACAACAAATACTGGGTAAGGCTGCTTGAAACAAATACGTCAAACCATGATCATTGGATCGTTGCGCGAGCTGACGAGCCAGAGGAAGACCGGTCCAAGAGCTCCTGTACCTTGTTTGAGCCTATTGTCACCATAGAAGAATTAAATGATCCAATTGTTGACGAAGAGAACGATGATGATGCCATCAACGATGGTGAGAATGATGATACCGAACAACATCAAAATCAGGAAGTCATCGATACTCATCCAGATCCTGATGTCATCGAGCACCTTCAAGATCACGATGCCACTGATGATCCTCATAACAATGGCAACCCAAGATTAGATGAAGGTTTTCAAGATCAGCATCATGGTAGAGATGAATCAAACATCCCTGAGGAACACCAAGCAAATGAATTAGTGAATCACGATGATGATGAGGAGATCAACAACGACGACGAAGAAGATGATAATAATAATAATCGTCGTGCTCGTGCTCATCCTCGTCCTCCACGAAACGAAATGGATAGGAAGAGAATATTAGTCCGTCTTCGCCATGTCCAACTCGGACACTACGTAGGCTTGCGGAGCGACAATGTCGACGCACAACACTTCATGGGAGGCTTATCCACTTCACCTGACAATGATACCAACAGCAGTATGGATGAGAATAATATTAGTACTAATGAACAAACTAACCGTACAGGTGAGAATAGTAACAGTGCGGATGATCAGACTAACCGTACAGGCGAGAATAATAACAATACAAATGATCAAACTAACTGTACAAATGATATAGCACCGTGTGACGTGTTCACTGTCATTAATTGGGAATCATTGGTGATATTTCCCAAACATGTGGCATTCAGGGGAGATAATGGAGTCTTCCTCAGCACTGATAGTCGCAGCTGGTATGAAGGTCACATGTGTTTGGAGTACCGAGCTGATGACTTTAGAGATGGAATGGCAGCGCATGAGATTTTTACTAATCCAGACGGAAGCATCCGCATAAAATCCGATTATTTGGGCAAGTTTTGGTGTCGTAAGCCGGGTGACCCTAACTGGGTCGTTCCTGACTCGGATAACCCGACTCGCAACGACACGTTGTTTCAGCCGATTAAAATTGACGAAAACGAATTTGCTCTCCGCAATATGGGAAACTTTCACATCTGCAAGAGATATACACTCGGTTGCATGGTCGGTTTCACAGCAAATGTCACCAATATCCCCATATATGCTCACCTGAGAATTGAAGAGATTGTTAAGTCAAGAATTGTGTATGATGTCAGTTATCACCTCACGCAAGCTAGGATCTACGATTATGAAAACGAGGTCGAAATTGCCATTGGAGAGGCCGTGAATTTGACCCAAGAAACCACTGGGATGACATTTAAGCTATCATACAAAAGGACCAAGAGCACGTGTTGGAATGATGCCAAAACCATGTCTATCAAGTCTGGCGGCGTTAAAACAACCATGCAAGCTGGTGTTCCGGTAATTGGAGATGACGAAAAGCTTGTAATTAGTTCAAGTGAGTTTACGAGTGGATCAACAATATTTAAGTGGGGAGAAGTTGAGACATGGGAAACTCCGGTGCAGAGCGTGTGCAGAGTTGACGTGCCAGCAATGACTAAGTTGAATGTGAGTCTTGTGGCCAATAAAGCTTCATATGAAGTTCCATTTAACTATTCTCGCAGCGACACTCGTACCAACGGTCAAATAAGCAACGACAACAACATGGATGATGGCATTTACGTTGGGTTCAATTTCTATAACTTCAAGTACAACAGCAAGCAAAAAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

680

Amino Acids

77.57

Weight (kDa)

4.7

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 17 - 132 5.7e-20 Agglutinin domain
Agglutinin PF07468 364 - 476 4.7e-13 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 834
AccII CGCG 1 cut(s) 322
AciI CCGC 5 cut(s) 820, 959, 1240, 1381, 1695
AclWI GGATC 6 cut(s) 320, 398, 500, 545, 1553, 1789
AcoI YGGCCR 1 cut(s) 1887
AcsI RAATTY 3 cut(s) 155, 1370, 1594
AcvI CACGTG 1 cut(s) 1656
AdeI CACNNNGTG 1 cut(s) 1040
AfaI GTAC 8 cut(s) 364, 916, 937, 979, 1021, 1172, 1942, 2018
AfiI CCNNNNNNNGG 3 cut(s) 1297, 1387, 1733
AflIII ACRYGT 5 cut(s) 1044, 1090, 1158, 1335, 1655
AgeI ACCGGT 1 cut(s) 345
AgsI TTSAA 8 cut(s) 284, 530, 593, 1487, 1764, 1873, 1999, 2014
AhlI ACTAGT 1 cut(s) 232
AjiI CACGTC 2 cut(s) 1045, 1852
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 1563, 1595
AloI GAACNNNNNNTCC 2 cut(s) 16, 48
Alw21I GWGCWC 5 cut(s) 359, 525, 727, 733, 1655
Alw26I GTCTC 2 cut(s) 197, 1805
AlwI GGATC 6 cut(s) 320, 398, 500, 545, 1553, 1789
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 2 cut(s) 1587, 1887
ApeKI GCWGC 5 cut(s) 249, 277, 1140, 1202, 1929
ApoI RAATTY 3 cut(s) 155, 1370, 1594
AseI ATTAAT 3 cut(s) 18, 114, 1059
AsiGI ACCGGT 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 322, 1207
AspS9I GGNCC 2 cut(s) 348, 1644
AsuC2I CCSGG 1 cut(s) 1284
AsuHPI GGTGA 9 cut(s) 376, 461, 861, 953, 1087, 1298, 1444, 1466, 1520
AsuII TTCGAA 1 cut(s) 195
AvaII GGWCC 2 cut(s) 348, 1644
AxyI CCTNAGG 1 cut(s) 630
BaeI ACNNNNGTAYC 2 cut(s) 1924, 1957
BalI TGGCCA 1 cut(s) 1889
BanII GRGCYC 1 cut(s) 359
BauI CACGAG 1 cut(s) 726
BbrPI CACGTG 1 cut(s) 1656
BbsI GAAGAC 3 cut(s) 348, 776, 1111
Bbv12I GWGCWC 5 cut(s) 359, 525, 727, 733, 1655
BbvCI CCTCAGC 1 cut(s) 1124
BbvI GCAGC 5 cut(s) 236, 264, 1152, 1214, 1941
BccI CCATC 4 cut(s) 440, 446, 1187, 1973
BceAI ACGGC 2 cut(s) 222, 1574
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 227
BclI TGATCA 4 cut(s) 130, 304, 964, 1006
BcnI CCSGG 1 cut(s) 1284
BcoDI GTCTC 2 cut(s) 197, 1805
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 2 cut(s) 233, 1542
BisI GCNGC 6 cut(s) 250, 278, 1141, 1203, 1696, 1930
BlsI GCNGC 6 cut(s) 251, 279, 1142, 1204, 1697, 1931
BmcAI AGTACT 1 cut(s) 916
Bme1390I CCNGG 2 cut(s) 227, 1284
Bme18I GGWCC 2 cut(s) 348, 1644
BmgBI CACGTC 2 cut(s) 1045, 1852
BmgT120I GGNCC 2 cut(s) 348, 1644
BmiI GGNNCC 2 cut(s) 138, 179
BmrFI CCNGG 2 cut(s) 227, 1284
BmrI ACTGGG 3 cut(s) 277, 1306, 1623
BmsI GCATC 6 cut(s) 236, 424, 529, 610, 1245, 1657
BmuI ACTGGG 3 cut(s) 277, 1306, 1623
BpiI GAAGAC 3 cut(s) 348, 776, 1111
BplI GAGNNNNNCTC 2 cut(s) 1107, 1139
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 1124
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 1284
Bsa29I ATCGAT 1 cut(s) 492
BsaAI YACGTR 2 cut(s) 811, 1656
BsaBI GATNNNNATC 2 cut(s) 498, 600
BsaJI CCNNGG 2 cut(s) 141, 226
BsaWI WCCGGW 3 cut(s) 345, 1726, 1825
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 1575, 1605
Bsc4I CCNNNNNNNGG 3 cut(s) 1297, 1387, 1733
Bse118I RCCGGY 1 cut(s) 345
Bse1I ACTGG 3 cut(s) 272, 1301, 1618
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 1 cut(s) 1866
Bse8I GATNNNNATC 2 cut(s) 498, 600
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 141, 226
BseGI GGATG 8 cut(s) 499, 624, 733, 904, 967, 1236, 1623, 1981
BseJI GATNNNNATC 2 cut(s) 498, 600
BseLI CCNNNNNNNGG 3 cut(s) 1297, 1387, 1733
BseMI GCAATG 1 cut(s) 1866
BseMII CTCAG 3 cut(s) 621, 1138, 1469
BseNI ACTGG 3 cut(s) 272, 1301, 1618
BseRI GAGGAG 1 cut(s) 689
BseXI GCAGC 5 cut(s) 236, 264, 1152, 1214, 1941
BsgI GTGCAG 2 cut(s) 1850, 1861
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 2 cut(s) 1589, 1889
BshTI ACCGGT 1 cut(s) 345
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 5 cut(s) 359, 525, 727, 733, 1655
BsiSI CCGG 4 cut(s) 346, 1283, 1727, 1826
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 1297, 1387, 1733
BsmAI GTCTC 2 cut(s) 197, 1805
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 2 cut(s) 1589, 1889
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 5 cut(s) 359, 525, 727, 733, 1655
Bsp1407I TGTACA 1 cut(s) 1019
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 5 cut(s) 820, 959, 1240, 1381, 1695
BspANI GGCC 2 cut(s) 1589, 1889
BspCNI CTCAG 3 cut(s) 622, 1137, 1470
BspDI ATCGAT 1 cut(s) 492
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 138, 179
BspPI GGATC 6 cut(s) 320, 398, 500, 545, 1553, 1789
BspT104I TTCGAA 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 1866
BsrFI RCCGGY 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 1019
BsrI ACTGG 3 cut(s) 272, 1301, 1618
BssAI RCCGGY 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 141, 226
BssSI CACGAG 1 cut(s) 726
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 7 cut(s) 935, 956, 977, 1019, 1038, 1054, 1949
Bst6I CTCTTC 3 cut(s) 414, 761, 1482
BstAUI TGTACA 1 cut(s) 1019
BstBAI YACGTR 2 cut(s) 811, 1656
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 6 cut(s) 324, 818, 1539, 1716, 1857, 2027
BstDEI CTNAG 4 cut(s) 630, 1124, 1478, 1866
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 1286
BstF5I GGATG 8 cut(s) 499, 624, 733, 904, 967, 1236, 1623, 1981
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 2 cut(s) 322, 1207
BstMAI GTCTC 2 cut(s) 197, 1805
BstMWI GCNNNNNNNGC 2 cut(s) 822, 1895
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 2 cut(s) 1094, 1162
BstPI GGTNACC 1 cut(s) 1286
BstSCI CCNGG 2 cut(s) 225, 1282
BstSNI TACGTA 1 cut(s) 811
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 5 cut(s) 236, 264, 1152, 1214, 1941
BstV2I GAAGAC 3 cut(s) 348, 776, 1111
BstX2I RGATCY 2 cut(s) 505, 1545
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstYI RGATCY 2 cut(s) 505, 1545
Bsu15I ATCGAT 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 2 cut(s) 1589, 1889
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 141
BtrI CACGTC 2 cut(s) 1045, 1852
BtsCI GGATG 8 cut(s) 499, 624, 733, 904, 967, 1236, 1623, 1981
BtsIMutI CAGTG 5 cut(s) 543, 961, 1050, 1128, 1611
Cac8I GCNNGC 6 cut(s) 324, 818, 1539, 1716, 1857, 2027
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 2 cut(s) 322, 1207
Cfr10I RCCGGY 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 348, 1644
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 845
Csp6I GTAC 8 cut(s) 363, 915, 936, 978, 1020, 1171, 1941, 2017
CspAI ACCGGT 1 cut(s) 345
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviQI GTAC 8 cut(s) 363, 915, 936, 978, 1020, 1171, 1941, 2017
DdeI CTNAG 4 cut(s) 630, 1124, 1478, 1866
DraIII CACNNNGTG 1 cut(s) 1040
EaeI YGGCCR 1 cut(s) 1887
Eam1104I CTCTTC 3 cut(s) 414, 761, 1482
EarI CTCTTC 3 cut(s) 414, 761, 1482
Ecl136II GAGCTC 1 cut(s) 357
Eco105I TACGTA 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 348, 1644
Eco53kI GAGCTC 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 1656
Eco81I CCTNAGG 1 cut(s) 630
Eco91I GGTNACC 1 cut(s) 1286
EcoICRI GAGCTC 1 cut(s) 357
EcoO65I GGTNACC 1 cut(s) 1286
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 197
FaqI GGGAC 1 cut(s) 243
FauNDI CATATG 1 cut(s) 1903
FbaI TGATCA 4 cut(s) 130, 304, 964, 1006
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 6 cut(s) 250, 278, 1141, 1203, 1696, 1930
FokI GGATG 8 cut(s) 486, 611, 720, 911, 974, 1223, 1630, 1988
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 6 cut(s) 250, 278, 1141, 1203, 1696, 1930
FspBI CTAG 2 cut(s) 233, 1542
GlaI GCGC 2 cut(s) 321, 1206
GluI GCNGC 6 cut(s) 250, 278, 1141, 1203, 1696, 1930
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 1589, 1889
HapII CCGG 4 cut(s) 346, 1283, 1727, 1826
HgaI GACGC 1 cut(s) 845
HhaI GCGC 2 cut(s) 322, 1207
Hin6I GCGC 2 cut(s) 320, 1205
HinP1I GCGC 2 cut(s) 320, 1205
HincII GTYRAC 3 cut(s) 415, 835, 1849
HindII GTYRAC 3 cut(s) 415, 835, 1849
HindIII AAGCTT 2 cut(s) 1748, 1896
HinfI GANTC 8 cut(s) 31, 617, 658, 1067, 1116, 1310, 1324, 1879
HpaII CCGG 4 cut(s) 346, 1283, 1727, 1826
HphI GGTGA 9 cut(s) 376, 461, 861, 953, 1087, 1298, 1444, 1466, 1520
Hpy166II GTNNAC 6 cut(s) 238, 415, 835, 1050, 1773, 1849
Hpy188I TCNGA 6 cut(s) 36, 72, 803, 969, 1252, 1315
Hpy8I GTNNAC 6 cut(s) 238, 415, 835, 1050, 1773, 1849
Hpy99I CGWCG 4 cut(s) 692, 695, 723, 839
HpyAV CCTTC 3 cut(s) 536, 578, 1145
HpyCH4III ACNGT 7 cut(s) 935, 956, 977, 1019, 1038, 1054, 1949
HpyCH4IV ACGT 7 cut(s) 293, 810, 1044, 1337, 1655, 1851, 1989
HpyCH4V TGCA 6 cut(s) 188, 1407, 1428, 1714, 1831, 1842
HpyF10VI GCNNNNNNNGC 2 cut(s) 822, 1895
HpyF3I CTNAG 4 cut(s) 630, 1124, 1478, 1866
HpySE526I ACGT 7 cut(s) 293, 810, 1044, 1337, 1655, 1851, 1989
HspAI GCGC 2 cut(s) 320, 1205
Ksp22I TGATCA 4 cut(s) 130, 304, 964, 1006
LmnI GCTCC 3 cut(s) 177, 362, 822
Lsp1109I GCAGC 5 cut(s) 236, 264, 1152, 1214, 1941
LweI GCATC 6 cut(s) 236, 424, 529, 610, 1245, 1657
MaeI CTAG 2 cut(s) 233, 1542
MaeII ACGT 7 cut(s) 293, 810, 1044, 1337, 1655, 1851, 1989
MaeIII GTNAC 6 cut(s) 382, 950, 1040, 1154, 1286, 1450
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 2 cut(s) 505, 1545
MhlI GDGCHC 5 cut(s) 359, 525, 727, 733, 1655
MlsI TGGCCA 1 cut(s) 1889
MluNI TGGCCA 1 cut(s) 1889
MlyI GAGTC 4 cut(s) 1125, 1304, 1318, 1888
MmeI TCCRAC 2 cut(s) 820, 1640
Mox20I TGGCCA 1 cut(s) 1889
MroXI GAANNNNTTC 1 cut(s) 588
MscI TGGCCA 1 cut(s) 1889
MslI CAYNNNNRTG 3 cut(s) 561, 666, 1616
Msp20I TGGCCA 1 cut(s) 1889
MspA1I CMGCKG 1 cut(s) 1143
MspI CCGG 4 cut(s) 346, 1283, 1727, 1826
MspR9I CCNGG 2 cut(s) 227, 1284
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 822, 1895
NciI CCSGG 1 cut(s) 1284
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 1903
NlaIV GGNNCC 2 cut(s) 138, 179
NmuCI GTSAC 5 cut(s) 382, 1040, 1154, 1286, 1450
NspI RCATGY 2 cut(s) 1094, 1162
NspV TTCGAA 1 cut(s) 195
PciI ACATGT 2 cut(s) 1090, 1158
PcsI WCGNNNNNNNCGW 5 cut(s) 423, 724, 745, 807, 1319
PctI GAATGC 1 cut(s) 1097
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 4 cut(s) 31, 617, 658, 1067
PflFI GACNNNGTC 1 cut(s) 830
PinAI ACCGGT 1 cut(s) 345
PkrI GCNGC 6 cut(s) 251, 279, 1142, 1204, 1697, 1931
PleI GAGTC 4 cut(s) 1124, 1304, 1318, 1887
PmaCI CACGTG 1 cut(s) 1656
PmlI CACGTG 1 cut(s) 1656
PpsI GAGTC 4 cut(s) 1124, 1304, 1318, 1887
Ppu21I YACGTR 2 cut(s) 811, 1656
PscI ACATGT 2 cut(s) 1090, 1158
PshBI ATTAAT 3 cut(s) 18, 114, 1059
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 225
PspCI CACGTG 1 cut(s) 1656
PspEI GGTNACC 1 cut(s) 1286
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 138, 179
PspPI GGNCC 2 cut(s) 348, 1644
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 505, 1545
PsyI GACNNNGTC 1 cut(s) 830
PvuII CAGCTG 1 cut(s) 1143
RsaI GTAC 8 cut(s) 364, 916, 937, 979, 1021, 1172, 1942, 2018
RsaNI GTAC 8 cut(s) 363, 915, 936, 978, 1020, 1171, 1941, 2017
RseI CAYNNNNRTG 3 cut(s) 561, 666, 1616
SacI GAGCTC 1 cut(s) 359
SalI GTCGAC 1 cut(s) 833
SatI GCNGC 6 cut(s) 250, 278, 1141, 1203, 1696, 1930
Sau96I GGNCC 2 cut(s) 348, 1644
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 4 cut(s) 1125, 1304, 1318, 1888
ScrFI CCNGG 2 cut(s) 227, 1284
SduI GDGCHC 5 cut(s) 359, 525, 727, 733, 1655
SfaNI GCATC 6 cut(s) 236, 424, 529, 610, 1245, 1657
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 2 cut(s) 348, 1644
SmiMI CAYNNNNRTG 3 cut(s) 561, 666, 1616
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SnaBI TACGTA 1 cut(s) 811
SpeI ACTAGT 1 cut(s) 232
SsiI CCGC 5 cut(s) 820, 959, 1240, 1381, 1695
SspI AATATT 3 cut(s) 774, 910, 1791
SspMI CTAG 2 cut(s) 233, 1542
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 225, 1282
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 7 cut(s) 935, 956, 977, 1019, 1038, 1054, 1949
TaiI ACGT 7 cut(s) 296, 813, 1047, 1340, 1658, 1854, 1992
TaqI TCGA 5 cut(s) 195, 492, 519, 834, 1569
TatI WGTACW 3 cut(s) 914, 1019, 2016
TauI GCSGC 1 cut(s) 1698
TfiI GAWTC 4 cut(s) 31, 617, 658, 1067
TscAI CASTG 5 cut(s) 550, 961, 1057, 1135, 1618
TseFI GTSAC 5 cut(s) 382, 1040, 1154, 1286, 1450
TseI GCWGC 5 cut(s) 249, 277, 1140, 1202, 1929
Tsp45I GTSAC 5 cut(s) 382, 1040, 1154, 1286, 1450
TspGWI ACGGA 2 cut(s) 770, 1245
TspRI CASTG 5 cut(s) 550, 961, 1057, 1135, 1618
Tth111I GACNNNGTC 1 cut(s) 830
VpaK11BI GGWCC 2 cut(s) 348, 1644
VspI ATTAAT 3 cut(s) 18, 114, 1059
XapI RAATTY 3 cut(s) 155, 1370, 1594
XceI RCATGY 2 cut(s) 1094, 1162
XcmI CCANNNNNNNNNTGG 2 cut(s) 892, 1610
XmiI GTMKAC 1 cut(s) 834
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 2 cut(s) 233, 1542
ZrmI AGTACT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.