RchiOBHm_Chr2g0163591

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000217
Physical Location & Seq
Forward (+)
79021510 .. 79023421
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53175

Sequence Viewer

Length: 1590 bp
ATGTCTTTCTTATTACCACCTACTATTGTTCTGAAATCATCGTGGTTCAACACTTACTTGAACTACAACAATGATTCTGATTCCGAGACACATGGCTTTCTCAAAGTCAACGGATCGAATGTCTTCAGCCCATTAGCAAAGTTCGAAGTGGTGACGGCCAATACTGGGACGGGACTGGTACATATCAGATGTTCTCAGAACAGAAAGTTCCTGCGAAGGAAATTTGAGAGTGATGTGAACCTTACTCCAGAGGCTGATGAACCAGAAGAGGACCAATCCAAATGGTCGTGTACACTATTTGAGCCTCAGGTAGTTGATGGTAACCCTGACCAAGCCCGGTTGTTCCATGTCCAAGCAAAGCTATATGCAACGGCATGGAACGAAGGTGGAGGCGAAAACAAAAAGTTCTTCAGATTACATGTTGCTACGAATGTTCAGGGTACCTTTGATATCATTGACTTGGAGTCATTGGTGATATTGCCAAAGCATGTGGCCTTCAAAGGTCACACCGGCAATTACCTTCAACTTGTGGCGGATGCTAAGCTCAAGTTCATATCCACCGATAAGGGGATTCCTGAGTCCTGGTTTGAGGTGTCCACTGATGGCGATGGAAGGGTGCAAATCAAATCCTACCACGACAATAGCTACTTTTTTAACAGCAGTGACAGGATTTGGTCTGACCCAAGGGTTGCCGCCACCGATCCAAGCACCTTGTTTTGGCCGGTGAAGGTCGACAGTAATAAGGTCGCTTTCAAAAGCAACAACAAATTTTGCGCCCAAATCAGTGATGCTAATGCAACAGACGGTCTGAAGGCAGCCTACACCAGCATTCCAACCAACTCACGCTTCACGCTGGAGGAGCTTGTTCTCTCTAGGAGAATTTACAACACCGACTTCGATCTTAAGAATGCCATAATCTACGGTGAGACCCCGATCACCATGGCCACCGCAAACGCCAGCAACAACACCTCAGTAGACAACACTGTGGAATTCAAGTTCGCGTACACGGAGAGTAAGAGCAGCACGTGGAGCGCCAGCCACTCGTGGTCGGTGGGCGTGAGTGTCACCGCCAGCTTCAAAGTTCCATTCATCGGCGGTACTGACGTCACTGCTTCAGCAGAGTATTCCGGATCTTATGAGTGGGGGGAAACTGTTACGTCAGAAAACACATTGGAAACTACCTACACGGTCACAGTGCCGGCAAACACTTCGATATCTGTGAGCCTGATGGCGACTAAGGGAACTTGCGACGTTCCTTACTCTTATTATCAGCGGGACGTGCTTTATAACGGTAAAACCGTTGTCTATAAGAAAGATGACGGGCTGTACACGGGTGTTAATTCATACAACTTCCGCTATGAGGTTACAACACTGAAAGAGCCAGAAACTAGAGCTGATTTGCCAACCAGACAGCAGAAGTTGCCGGACCCATCGGTCGACCCCTCCATAAAACAAAAGCTACCTCTGCCCGTGCCGTCTGAATCAACCACCAGAGTGCAAAACAAGGTGACCTCGACCACCACCCCGAAACAAGAGTTGTCAATGCTGGGATTAGAAAGTGCAGCAGCTCGATCTGCGGTGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

529

Amino Acids

58.75

Weight (kDa)

5.75

Isoelectric Point (pI)

28.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 5 - 133 3.6e-18 Agglutinin domain
Aerolysin PF01117 301 - 422 1.4e-09 Aerolysin toxin
ETX_MTX2 PF03318 309 - 421 2.7e-09 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1287
AasI GACNNNNNNGTC 1 cut(s) 1433
AatII GACGTC 1 cut(s) 1107
Acc65I GGTACC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 3 cut(s) 732, 975, 1437
AccII CGCG 1 cut(s) 1001
AccIII TCCGGA 1 cut(s) 1127
AciI CCGC 8 cut(s) 533, 693, 948, 1068, 1095, 1273, 1354, 1577
AclWI GGATC 3 cut(s) 121, 695, 1138
AcoI YGGCCR 3 cut(s) 156, 719, 942
AcsI RAATTY 4 cut(s) 221, 767, 879, 989
AcuI CTGAAG 4 cut(s) 109, 394, 830, 1098
AcvI CACGTG 1 cut(s) 1026
AcyI GRCGYC 1 cut(s) 1104
AfaI GTAC 6 cut(s) 180, 292, 442, 1004, 1099, 1328
AfiI CCNNNNNNNGG 5 cut(s) 165, 567, 717, 1091, 1360
AflII CTTAAG 1 cut(s) 902
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 7 cut(s) 49, 61, 499, 524, 754, 994, 1078
AhdI GACNNNNNGTC 1 cut(s) 463
AjiI CACGTC 1 cut(s) 1279
AjnI CCWGG 1 cut(s) 581
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AleI CACNNNNGTG 1 cut(s) 1493
AloI GAACNNNNNNTCC 2 cut(s) 980, 1012
AluBI AGCT 8 cut(s) 361, 544, 645, 862, 1074, 1394, 1459, 1568
AluI AGCT 8 cut(s) 361, 544, 645, 862, 1074, 1394, 1459, 1568
Alw26I GTCTC 2 cut(s) 80, 920
AlwI GGATC 3 cut(s) 121, 695, 1138
AlwNI CAGNNNCTG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 1127
AoxI GGCC 4 cut(s) 156, 492, 719, 942
ApeKI GCWGC 4 cut(s) 815, 1020, 1562, 1565
ApoI RAATTY 4 cut(s) 221, 767, 879, 989
Asp700I GAANNNNTTC 1 cut(s) 122
Asp718I GGTACC 1 cut(s) 440
AspLEI GCGC 2 cut(s) 776, 1034
AspS9I GGNCC 2 cut(s) 271, 1426
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 7 cut(s) 163, 484, 736, 928, 935, 1057, 1519
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 2 cut(s) 271, 1426
AxyI CCTNAGG 1 cut(s) 306
BaeI ACNNNNGTAYC 2 cut(s) 1089, 1122
BalI TGGCCA 1 cut(s) 944
BanI GGYRCC 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 803, 835
BauI CACGAG 1 cut(s) 1042
BbrPI CACGTG 1 cut(s) 1026
BbsI GAAGAC 1 cut(s) 115
BbvI GCAGC 4 cut(s) 827, 1032, 1574, 1577
BccI CCATC 5 cut(s) 311, 596, 602, 1222, 1438
BceAI ACGGC 3 cut(s) 171, 387, 1459
BcgI CGANNNNNNTGC 2 cut(s) 1191, 1225
BciT130I CCWGG 1 cut(s) 583
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 80, 920
BfaI CTAG 3 cut(s) 873, 1389, 1588
BfoI RGCGCY 1 cut(s) 1035
BfrI CTTAAG 1 cut(s) 902
BisI GCNGC 5 cut(s) 693, 816, 1021, 1563, 1566
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 5 cut(s) 694, 817, 1022, 1564, 1567
Bme1390I CCNGG 2 cut(s) 337, 583
Bme18I GGWCC 2 cut(s) 271, 1426
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 1279
BmgT120I GGNCC 2 cut(s) 271, 1426
BmiI GGNNCC 2 cut(s) 442, 1428
BmrFI CCNGG 2 cut(s) 337, 583
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 526, 778
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 2 cut(s) 231, 875
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 1104
BsaI GGTCTC 1 cut(s) 920
BsaJI CCNNGG 2 cut(s) 683, 939
BsaWI WCCGGW 1 cut(s) 1127
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 567, 717, 1091, 1360
Bse118I RCCGGY 3 cut(s) 509, 721, 1198
Bse1I ACTGG 2 cut(s) 169, 180
Bse21I CCTNAGG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 1127
BseBI CCWGG 1 cut(s) 583
BseDI CCNNGG 2 cut(s) 683, 939
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 5 cut(s) 165, 567, 717, 1091, 1360
BseMII CTCAG 4 cut(s) 209, 320, 567, 984
BseNI ACTGG 2 cut(s) 169, 180
BseRI GAGGAG 1 cut(s) 872
BseXI GCAGC 4 cut(s) 827, 1032, 1574, 1577
BseYI CCCAGC 1 cut(s) 1546
BsgI GTGCAG 1 cut(s) 1581
Bsh1236I CGCG 1 cut(s) 1001
Bsh1285I CGRYCG 1 cut(s) 1437
BshFI GGCC 4 cut(s) 158, 494, 721, 944
BshNI GGYRCC 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 1437
BsiSI CCGG 6 cut(s) 337, 510, 722, 1128, 1199, 1424
BslFI GGGAC 3 cut(s) 181, 186, 1289
BslI CCNNNNNNNGG 5 cut(s) 165, 567, 717, 1091, 1360
BsmAI GTCTC 2 cut(s) 80, 920
BsmFI GGGAC 3 cut(s) 181, 186, 1289
BsmI GAATGC 2 cut(s) 828, 913
BsnI GGCC 4 cut(s) 158, 494, 721, 944
Bso31I GGTCTC 1 cut(s) 920
Bsp119I TTCGAA 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 1127
Bsp1407I TGTACA 2 cut(s) 290, 1326
Bsp143I GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
Bsp1720I GCTNAGC 1 cut(s) 540
Bsp19I CCATGG 1 cut(s) 939
BspACI CCGC 8 cut(s) 533, 693, 948, 1068, 1095, 1273, 1354, 1577
BspANI GGCC 4 cut(s) 158, 494, 721, 944
BspCNI CTCAG 4 cut(s) 208, 319, 568, 983
BspEI TCCGGA 1 cut(s) 1127
BspFNI CGCG 1 cut(s) 1001
BspLI GGNNCC 2 cut(s) 442, 1428
BspPI GGATC 3 cut(s) 121, 695, 1138
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 440
BspTI CTTAAG 1 cut(s) 902
BspTNI GGTCTC 1 cut(s) 920
BsrFI RCCGGY 3 cut(s) 509, 721, 1198
BsrGI TGTACA 2 cut(s) 290, 1326
BsrI ACTGG 2 cut(s) 169, 180
BssAI RCCGGY 3 cut(s) 509, 721, 1198
BssECI CCNNGG 2 cut(s) 683, 939
BssMI GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
BssNI GRCGYC 1 cut(s) 1104
BssSI CACGAG 1 cut(s) 1042
BssT1I CCWWGG 2 cut(s) 683, 939
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 1 cut(s) 583
Bst4CI ACNGT 9 cut(s) 737, 806, 923, 985, 1153, 1189, 1195, 1292, 1300
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 1104
BstAFI CTTAAG 1 cut(s) 902
BstAPI GCANNNNNTGC 1 cut(s) 1420
BstAUI TGTACA 2 cut(s) 290, 1326
BstBAI YACGTR 1 cut(s) 1026
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 4 cut(s) 958, 1036, 1072, 1200
BstDEI CTNAG 6 cut(s) 195, 306, 540, 576, 970, 1236
BstDSI CCRYGG 1 cut(s) 939
BstEII GGTNACC 2 cut(s) 320, 1507
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 1 cut(s) 1001
BstH2I RGCGCY 1 cut(s) 1035
BstHHI GCGC 2 cut(s) 776, 1034
BstKTI GATC 6 cut(s) 116, 703, 901, 936, 1133, 1574
BstMAI GTCTC 2 cut(s) 80, 920
BstMBI GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
BstMCI CGRYCG 1 cut(s) 1437
BstMWI GCNNNNNNNGC 6 cut(s) 859, 1029, 1279, 1420, 1465, 1574
BstNI CCWGG 1 cut(s) 583
BstNSI RCATGY 2 cut(s) 422, 491
BstPI GGTNACC 2 cut(s) 320, 1507
BstSCI CCNGG 2 cut(s) 335, 581
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 4 cut(s) 827, 1032, 1574, 1577
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 1130
BstYI RGATCY 1 cut(s) 1130
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 4 cut(s) 158, 494, 721, 944
BtgI CCRYGG 1 cut(s) 939
BtgZI GCGATG 1 cut(s) 621
BtrI CACGTC 1 cut(s) 1279
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 2 cut(s) 667, 1107
BtsIMutI CAGTG 7 cut(s) 597, 667, 790, 981, 1107, 1200, 1370
Cac8I GCNNGC 4 cut(s) 958, 1036, 1072, 1200
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 2 cut(s) 776, 1034
Cfr10I RCCGGY 3 cut(s) 509, 721, 1198
Cfr13I GGNCC 2 cut(s) 271, 1426
Csp6I GTAC 6 cut(s) 179, 291, 441, 1003, 1098, 1327
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 6 cut(s) 92, 347, 375, 419, 488, 940
CviQI GTAC 6 cut(s) 179, 291, 441, 1003, 1098, 1327
DdeI CTNAG 6 cut(s) 195, 306, 540, 576, 970, 1236
DpnI GATC 6 cut(s) 115, 702, 900, 935, 1132, 1573
DpnII GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
DrdI GACNNNNNNGTC 1 cut(s) 1433
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 1433
EaeI YGGCCR 3 cut(s) 156, 719, 942
Eam1104I CTCTTC 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 2 cut(s) 683, 939
Eco31I GGTCTC 1 cut(s) 920
Eco32I GATATC 2 cut(s) 451, 1215
Eco47I GGWCC 2 cut(s) 271, 1426
Eco57I CTGAAG 4 cut(s) 109, 394, 830, 1098
Eco72I CACGTG 1 cut(s) 1026
Eco81I CCTNAGG 1 cut(s) 306
Eco91I GGTNACC 2 cut(s) 320, 1507
EcoO65I GGTNACC 2 cut(s) 320, 1507
EcoRI GAATTC 1 cut(s) 989
EcoRII CCWGG 1 cut(s) 581
EcoRV GATATC 2 cut(s) 451, 1215
EcoT14I CCWWGG 2 cut(s) 683, 939
ErhI CCWWGG 2 cut(s) 683, 939
FaeI CATG 6 cut(s) 95, 350, 378, 422, 491, 943
FaqI GGGAC 3 cut(s) 181, 186, 1289
FatI CATG 6 cut(s) 91, 346, 374, 418, 487, 939
FauI CCCGC 1 cut(s) 1266
FblI GTMKAC 3 cut(s) 732, 975, 1437
Fnu4HI GCNGC 5 cut(s) 693, 816, 1021, 1563, 1566
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 5 cut(s) 693, 816, 1021, 1563, 1566
FspBI CTAG 3 cut(s) 873, 1389, 1588
GlaI GCGC 2 cut(s) 775, 1033
GluI GCNGC 5 cut(s) 693, 816, 1021, 1563, 1566
GsaI CCCAGC 1 cut(s) 1550
GsuI CTGGAG 2 cut(s) 231, 875
HaeII RGCGCY 1 cut(s) 1035
HaeIII GGCC 4 cut(s) 158, 494, 721, 944
HapII CCGG 6 cut(s) 337, 510, 722, 1128, 1199, 1424
HhaI GCGC 2 cut(s) 776, 1034
Hin1I GRCGYC 1 cut(s) 1104
Hin1II CATG 6 cut(s) 95, 350, 378, 422, 491, 943
Hin6I GCGC 2 cut(s) 774, 1032
HinP1I GCGC 2 cut(s) 774, 1032
HincII GTYRAC 3 cut(s) 109, 733, 1438
HindII GTYRAC 3 cut(s) 109, 733, 1438
HinfI GANTC 6 cut(s) 74, 80, 464, 571, 578, 1481
HpaII CCGG 6 cut(s) 337, 510, 722, 1128, 1199, 1424
HphI GGTGA 7 cut(s) 163, 484, 736, 928, 935, 1057, 1519
Hpy188III TCNNGA 3 cut(s) 248, 575, 1128
Hpy99I CGWCG 1 cut(s) 1253
HpyAV CCTTC 7 cut(s) 210, 377, 505, 530, 606, 721, 805
HpyCH4III ACNGT 9 cut(s) 737, 806, 923, 985, 1153, 1189, 1195, 1292, 1300
HpyCH4IV ACGT 5 cut(s) 1025, 1104, 1157, 1251, 1278
HpyCH4V TGCA 5 cut(s) 368, 619, 797, 1498, 1562
HpyF10VI GCNNNNNNNGC 6 cut(s) 859, 1029, 1279, 1420, 1465, 1574
HpyF3I CTNAG 6 cut(s) 195, 306, 540, 576, 970, 1236
HpySE526I ACGT 5 cut(s) 1025, 1104, 1157, 1251, 1278
Hsp92I GRCGYC 1 cut(s) 1104
Hsp92II CATG 6 cut(s) 95, 350, 378, 422, 491, 943
HspAI GCGC 2 cut(s) 774, 1032
Kpn2I TCCGGA 1 cut(s) 1127
KpnI GGTACC 1 cut(s) 444
KroI GCCGGC 1 cut(s) 1198
KroNI GCCGGC 1 cut(s) 1200
Kzo9I GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
LmnI GCTCC 2 cut(s) 859, 1029
Lsp1109I GCAGC 4 cut(s) 827, 1032, 1574, 1577
LweI GCATC 2 cut(s) 526, 778
MaeI CTAG 3 cut(s) 873, 1389, 1588
MaeII ACGT 5 cut(s) 1025, 1104, 1157, 1251, 1278
MalI GATC 6 cut(s) 115, 702, 900, 935, 1132, 1573
MboI GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
MboII GAAGA 3 cut(s) 115, 278, 400
MflI RGATCY 1 cut(s) 1130
MlsI TGGCCA 1 cut(s) 944
MluCI AATT 6 cut(s) 221, 514, 767, 879, 989, 1339
MluNI TGGCCA 1 cut(s) 944
MlyI GAGTC 2 cut(s) 473, 587
MmeI TCCRAC 1 cut(s) 857
Mox20I TGGCCA 1 cut(s) 944
MroI TCCGGA 1 cut(s) 1127
MroNI GCCGGC 1 cut(s) 1198
MroXI GAANNNNTTC 1 cut(s) 122
MscI TGGCCA 1 cut(s) 944
MseI TTAA 3 cut(s) 654, 903, 1338
MslI CAYNNNNRTG 1 cut(s) 1493
Msp20I TGGCCA 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 1273
MspCI CTTAAG 1 cut(s) 902
MspI CCGG 6 cut(s) 337, 510, 722, 1128, 1199, 1424
MspR9I CCNGG 2 cut(s) 337, 583
Mva1269I GAATGC 2 cut(s) 828, 913
MvaI CCWGG 1 cut(s) 583
MvnI CGCG 1 cut(s) 1001
MwoI GCNNNNNNNGC 6 cut(s) 859, 1029, 1279, 1420, 1465, 1574
NaeI GCCGGC 1 cut(s) 1200
NciI CCSGG 1 cut(s) 337
NcoI CCATGG 1 cut(s) 939
NdeII GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
NgoMIV GCCGGC 1 cut(s) 1198
NlaIII CATG 6 cut(s) 95, 350, 378, 422, 491, 943
NlaIV GGNNCC 2 cut(s) 442, 1428
NmuCI GTSAC 7 cut(s) 151, 503, 662, 1063, 1105, 1189, 1507
NspI RCATGY 2 cut(s) 422, 491
NspV TTCGAA 1 cut(s) 144
OliI CACNNNNGTG 1 cut(s) 1493
PciI ACATGT 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 1296
PctI GAATGC 2 cut(s) 828, 913
PdiI GCCGGC 1 cut(s) 1200
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 4 cut(s) 74, 80, 571, 1481
PkrI GCNGC 5 cut(s) 694, 817, 1022, 1564, 1567
PleI GAGTC 2 cut(s) 472, 586
PmaCI CACGTG 1 cut(s) 1026
PmlI CACGTG 1 cut(s) 1026
PpsI GAGTC 2 cut(s) 472, 586
Ppu21I YACGTR 1 cut(s) 1026
PscI ACATGT 1 cut(s) 418
PsiI TTATAA 1 cut(s) 1287
Psp6I CCWGG 1 cut(s) 581
PspCI CACGTG 1 cut(s) 1026
PspEI GGTNACC 2 cut(s) 320, 1507
PspFI CCCAGC 1 cut(s) 1546
PspGI CCWGG 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 442, 1428
PspPI GGNCC 2 cut(s) 271, 1426
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 1130
RsaI GTAC 6 cut(s) 180, 292, 442, 1004, 1099, 1328
RsaNI GTAC 6 cut(s) 179, 291, 441, 1003, 1098, 1327
RseI CAYNNNNRTG 1 cut(s) 1493
SalI GTCGAC 2 cut(s) 731, 1436
SaqAI TTAA 3 cut(s) 654, 903, 1338
SatI GCNGC 5 cut(s) 693, 816, 1021, 1563, 1566
Sau3AI GATC 6 cut(s) 113, 700, 898, 933, 1130, 1571
Sau96I GGNCC 2 cut(s) 271, 1426
SchI GAGTC 2 cut(s) 473, 587
ScrFI CCNGG 2 cut(s) 337, 583
SfaNI GCATC 2 cut(s) 526, 778
SfuI TTCGAA 1 cut(s) 144
SinI GGWCC 2 cut(s) 271, 1426
SmiMI CAYNNNNRTG 1 cut(s) 1493
SmlI CTYRAG 2 cut(s) 545, 902
SmoI CTYRAG 2 cut(s) 545, 902
Sse9I AATT 6 cut(s) 221, 514, 767, 879, 989, 1339
SsiI CCGC 8 cut(s) 533, 693, 948, 1068, 1095, 1273, 1354, 1577
SspMI CTAG 3 cut(s) 873, 1389, 1588
StyD4I CCNGG 2 cut(s) 335, 581
StyI CCWWGG 2 cut(s) 683, 939
TaaI ACNGT 9 cut(s) 737, 806, 923, 985, 1153, 1189, 1195, 1292, 1300
TaiI ACGT 5 cut(s) 1028, 1107, 1160, 1254, 1281
TaqI TCGA 8 cut(s) 116, 144, 732, 897, 1211, 1437, 1514, 1570
TaqII GACCGA 1 cut(s) 1423
TasI AATT 6 cut(s) 221, 514, 767, 879, 989, 1339
TatI WGTACW 2 cut(s) 290, 1326
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 4 cut(s) 74, 80, 571, 1481
Tru1I TTAA 3 cut(s) 654, 903, 1338
Tru9I TTAA 3 cut(s) 654, 903, 1338
TscAI CASTG 7 cut(s) 604, 667, 790, 988, 1114, 1200, 1377
TseFI GTSAC 7 cut(s) 151, 503, 662, 1063, 1105, 1189, 1507
TseI GCWGC 4 cut(s) 815, 1020, 1562, 1565
Tsp45I GTSAC 7 cut(s) 151, 503, 662, 1063, 1105, 1189, 1507
TspDTI ATGAA 4 cut(s) 273, 541, 1078, 1332
TspGWI ACGGA 2 cut(s) 126, 1022
TspRI CASTG 7 cut(s) 604, 667, 790, 988, 1114, 1200, 1377
Vha464I CTTAAG 1 cut(s) 902
VpaK11BI GGWCC 2 cut(s) 271, 1426
XapI RAATTY 4 cut(s) 221, 767, 879, 989
XceI RCATGY 2 cut(s) 422, 491
XmiI GTMKAC 3 cut(s) 732, 975, 1437
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 3 cut(s) 873, 1389, 1588
ZraI GACGTC 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.