Rh5DG086700

Agglutinin domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
7649484 .. 7650086
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG086700.1

Sequence Viewer

Length: 603 bp
ATGGCCACCGCAAACGCCAGCAACAACACCTCAGCAGAAAACACTGTGGAATTCAAGTTTGCATACAAGGATGGTAAGAGCAGCACGTGGAAGGCCAGCCACTCGTGGATGGTAGGCGTGAGTGTCTCTGCCAGCTTCAAAATTCCATTCATCGGCGGTACTGACGTCACTGCTCAAGCAGAGTATTCCGGATCCTATGAGTGGGGAGAGACCATTACATCCGAAAACACATTGGAGACCACCTACAAGGCTACAGTGCCGACAAACACTTCTATATCTGTGAGCCTGATGGCGACCAAGGGAACTTGTGACATGCCTTACTCGTATTATCAGAAAGACGTGCTTTATAATGGTAAATCCGTTATCTATAAGAAGGATGATGGGGTGTACACGGGTGTCAATTCATACAATTTCCGCTACGAGACTACAGCACGGACAGAGCCGGTATCTATAGCTAATTTGCTGGACCCGTCGGCCGACCCTACCACAGAACAGATGTTGCCGGACCCATCGGTCGACCCCACCACAGAACAAATGATACCTGAGCCCGTACCGTCTGGATCAACCACCAGGGTGCAAAACAAGGTCAAAACCATAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

200

Amino Acids

21.79

Weight (kDa)

4.82

Isoelectric Point (pI)

20.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aerolysin PF01117 4 - 109 4.3e-08 Aerolysin toxin
ETX_MTX2 PF03318 7 - 107 1e-06 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AasI GACNNNNNNGTC 1 cut(s) 512
AatII GACGTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 516
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 3 cut(s) 9, 156, 415
AclWI GGATC 3 cut(s) 186, 199, 568
AcoI YGGCCR 2 cut(s) 3, 474
AcsI RAATTY 2 cut(s) 50, 141
AcvI CACGTG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 160, 389, 552
AfiI CCNNNNNNNGG 2 cut(s) 152, 201
AgsI TTSAA 2 cut(s) 55, 139
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 569
AleI CACNNNNGTG 1 cut(s) 572
AluBI AGCT 3 cut(s) 135, 455, 599
AluI AGCT 3 cut(s) 135, 455, 599
Alw26I GTCTC 4 cut(s) 130, 203, 230, 416
AlwI GGATC 3 cut(s) 186, 199, 568
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 3 cut(s) 3, 93, 474
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 50, 141
AspS9I GGNCC 2 cut(s) 466, 505
AvaII GGWCC 2 cut(s) 466, 505
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 549
BauI CACGAG 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 93
BccI CCATC 5 cut(s) 65, 103, 283, 374, 517
BciT130I CCWGG 1 cut(s) 571
BcoDI GTCTC 4 cut(s) 130, 203, 230, 416
BfmI CTRYAG 3 cut(s) 252, 426, 450
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 466, 505
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 466, 505
BmiI GGNNCC 3 cut(s) 193, 468, 507
BmrFI CCNGG 1 cut(s) 571
Bpu10I CCTNAGC 2 cut(s) 31, 543
BpuEI CTTGAG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 2 cut(s) 203, 230
BsaJI CCNNGG 2 cut(s) 297, 570
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 201
Bse118I RCCGGY 1 cut(s) 442
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 2 cut(s) 297, 570
BseGI GGATG 4 cut(s) 76, 114, 218, 382
BseLI CCNNNNNNNGG 2 cut(s) 152, 201
BseMII CTCAG 2 cut(s) 45, 534
BseX3I CGGCCG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 93
Bsh1285I CGRYCG 2 cut(s) 477, 516
BshFI GGCC 3 cut(s) 5, 95, 476
BsiEI CGRYCG 2 cut(s) 477, 516
BsiSI CCGG 3 cut(s) 189, 443, 503
BslI CCNNNNNNNGG 2 cut(s) 152, 201
BsmAI GTCTC 4 cut(s) 130, 203, 230, 416
BsnI GGCC 3 cut(s) 5, 95, 476
Bso31I GGTCTC 2 cut(s) 203, 230
Bsp1286I GDGCHC 1 cut(s) 549
Bsp13I TCCGGA 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 2 cut(s) 191, 560
BspACI CCGC 3 cut(s) 9, 156, 415
BspANI GGCC 3 cut(s) 5, 95, 476
BspCNI CTCAG 2 cut(s) 44, 535
BspEI TCCGGA 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 193, 468, 507
BspPI GGATC 3 cut(s) 186, 199, 568
BspTNI GGTCTC 2 cut(s) 203, 230
BsrFI RCCGGY 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 387
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 297, 570
BssMI GATC 2 cut(s) 191, 560
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 3 cut(s) 46, 256, 555
BstACI GRCGYC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 19, 97, 133
BstDEI CTNAG 2 cut(s) 31, 543
BstF5I GGATG 4 cut(s) 76, 114, 218, 382
BstKTI GATC 2 cut(s) 194, 563
BstMAI GTCTC 4 cut(s) 130, 203, 230, 416
BstMBI GATC 2 cut(s) 191, 560
BstMCI CGRYCG 2 cut(s) 477, 516
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 3 cut(s) 252, 426, 450
BstV1I GCAGC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BstZI CGGCCG 1 cut(s) 474
BsuRI GGCC 3 cut(s) 5, 95, 476
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 4 cut(s) 76, 114, 218, 382
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 42, 168, 261
Cac8I GCNNGC 3 cut(s) 19, 97, 133
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 466, 505
Csp6I GTAC 3 cut(s) 159, 388, 551
CviAII CATG 1 cut(s) 313
CviQI GTAC 3 cut(s) 159, 388, 551
DdeI CTNAG 2 cut(s) 31, 543
DpnI GATC 2 cut(s) 193, 562
DpnII GATC 2 cut(s) 191, 560
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 2 cut(s) 3, 474
EagI CGGCCG 1 cut(s) 474
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 549
Eco31I GGTCTC 2 cut(s) 203, 230
Eco47I GGWCC 2 cut(s) 466, 505
Eco52I CGGCCG 1 cut(s) 474
Eco72I CACGTG 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 316
FaiI YATR 9 cut(s) 64, 198, 275, 314, 348, 369, 406, 452, 596
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 4 cut(s) 83, 121, 205, 389
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
HaeIII GGCC 3 cut(s) 5, 95, 476
HapII CCGG 3 cut(s) 189, 443, 503
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HpaII CCGG 3 cut(s) 189, 443, 503
Hpy166II GTNNAC 3 cut(s) 388, 390, 517
Hpy188I TCNGA 2 cut(s) 223, 333
Hpy188III TCNNGA 2 cut(s) 189, 558
Hpy8I GTNNAC 3 cut(s) 388, 390, 517
Hpy99I CGWCG 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 85, 367
HpyCH4III ACNGT 3 cut(s) 46, 256, 555
HpyCH4IV ACGT 3 cut(s) 86, 165, 339
HpyCH4V TGCA 2 cut(s) 62, 577
HpyF3I CTNAG 2 cut(s) 31, 543
HpySE526I ACGT 3 cut(s) 86, 165, 339
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 1 cut(s) 316
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 2 cut(s) 191, 560
Lsp1109I GCAGC 1 cut(s) 93
MaeII ACGT 3 cut(s) 86, 165, 339
MaeIII GTNAC 2 cut(s) 166, 308
MalI GATC 2 cut(s) 193, 562
MboI GATC 2 cut(s) 191, 560
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 549
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 50, 141, 400, 409, 457
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 40
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 572
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 189, 443, 503
MspR9I CCNGG 1 cut(s) 571
MvaI CCWGG 1 cut(s) 571
NdeII GATC 2 cut(s) 191, 560
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 3 cut(s) 193, 468, 507
NmuCI GTSAC 2 cut(s) 166, 308
NspI RCATGY 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 572
PkrI GCNGC 1 cut(s) 83
PmaCI CACGTG 1 cut(s) 87
PmlI CACGTG 1 cut(s) 87
Ppu21I YACGTR 1 cut(s) 87
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 569
PspCI CACGTG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 193, 468, 507
PspPI GGNCC 2 cut(s) 466, 505
PsrI GAACNNNNNNTAC 2 cut(s) 522, 554
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 3 cut(s) 160, 389, 552
RsaNI GTAC 3 cut(s) 159, 388, 551
RseI CAYNNNNRTG 1 cut(s) 572
SalI GTCGAC 1 cut(s) 515
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 191, 560
Sau96I GGNCC 2 cut(s) 466, 505
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 1 cut(s) 549
SfcI CTRYAG 3 cut(s) 252, 426, 450
SinI GGWCC 2 cut(s) 466, 505
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 5 cut(s) 50, 141, 400, 409, 457
SsiI CCGC 3 cut(s) 9, 156, 415
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 46, 256, 555
TaiI ACGT 3 cut(s) 89, 168, 342
TaqI TCGA 1 cut(s) 516
TaqII GACCGA 1 cut(s) 502
TasI AATT 5 cut(s) 50, 141, 400, 409, 457
TatI WGTACW 1 cut(s) 387
TscAI CASTG 3 cut(s) 49, 175, 261
TseFI GTSAC 2 cut(s) 166, 308
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 2 cut(s) 166, 308
TspDTI ATGAA 2 cut(s) 139, 393
TspGWI ACGGA 2 cut(s) 349, 448
TspRI CASTG 3 cut(s) 49, 175, 261
VpaK11BI GGWCC 2 cut(s) 466, 505
XapI RAATTY 2 cut(s) 50, 141
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 516
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.