RLG00000029318

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000217
Physical Location & Seq
Reverse (-)
36461693 .. 36465281
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029318

Sequence Viewer

Length: 555 bp
ATGGCAGGGCTTCCAAGATTTGTAGTGCTAAAATCCTCCTCGAACCTCAAATGCTTGAGCTTAACAAAAAATGTTCCATATGAGCCAGCAGGGTTCATGAAGTGCAATAGAGAACAAAGTGCTACTACATTCGAGAATGCCTTGTATCTAGGAGCACGCGGCGATGTTTTCAAAGTTGTTGACTGGGAATCGCTGGTGATACTTCCCCCACGGGTGGCCTTCAGATCCTTAGAAGATGGCAGTTACCTCTGTTCCCGCTGGATCGAACGACACCCATATCAAAGGTTCGAGTCCAACTTGGATGTTGGAGATCCATTGGTGGCCAAGGAGTTATTCGTCACTGCTGATGGAAGCCTTCGTATAAAGGACGGGCACTATGCCAAATTCTGGAGGCGTAGCCCTAACTGGATCTGGGCTGATGCATCATCCGAAAACACGGCTCCTGGGGTATGTCATCGTGCAGGGTTTCTAAATCGGTTCAATGGTCGAATGATCAATCTCGTTAGCAGCCAGCGCTCAACAAGCAAATTGGTGCCGGTGGTGATCCGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

185

Amino Acids

20.8

Weight (kDa)

9.57

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 76 - 144 9e-07 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 532
AccB7I CCANNNNNTGG 1 cut(s) 387
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 159, 256
AclWI GGATC 5 cut(s) 219, 269, 305, 416, 538
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 205
AfeI AGCGCT 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 214, 387
AgsI TTSAA 2 cut(s) 172, 481
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 157
AlwI GGATC 5 cut(s) 219, 269, 305, 416, 538
Aor51HI AGCGCT 1 cut(s) 515
AoxI GGCC 2 cut(s) 216, 321
ApeKI GCWGC 1 cut(s) 507
ApoI RAATTY 1 cut(s) 383
AspLEI GCGC 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 208, 553
BaeGI GKGCMC 1 cut(s) 375
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 519
BccI CCATC 2 cut(s) 230, 341
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 492
BfaI CTAG 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 517
BisI GCNGC 2 cut(s) 160, 508
BlsI GCNGC 2 cut(s) 161, 509
Bme1390I CCNGG 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 441, 534
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 2 cut(s) 409, 431
BmuI ACTGGG 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 209, 324, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 387
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 188, 410
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 209, 324, 443
BseGI GGATG 2 cut(s) 307, 425
BseLI CCNNNNNNNGG 2 cut(s) 214, 387
BseNI ACTGG 2 cut(s) 188, 410
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 218, 323
BshNI GGYRCC 1 cut(s) 532
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 2 cut(s) 214, 387
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 218, 323
Bsp1286I GDGCHC 2 cut(s) 157, 375
Bsp143I GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
BspACI CCGC 2 cut(s) 159, 256
BspANI GGCC 2 cut(s) 218, 323
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 441, 534
BspPI GGATC 5 cut(s) 219, 269, 305, 416, 538
BspT107I GGYRCC 1 cut(s) 532
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 2 cut(s) 188, 410
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 209, 324, 443
BssMI GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 87, 157, 512
BstDEI CTNAG 2 cut(s) 229, 552
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 307, 425
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 7 cut(s) 227, 264, 313, 411, 495, 546, 551
BstMBI GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
BstMWI GCNNNNNNNGC 2 cut(s) 513, 522
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 375
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 519
BstX2I RGATCY 3 cut(s) 224, 310, 408
BstYI RGATCY 3 cut(s) 224, 310, 408
BsuRI GGCC 2 cut(s) 218, 323
BtgI CCRYGG 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 307, 425
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 3 cut(s) 87, 157, 512
CciI TCATGA 1 cut(s) 96
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 1 cut(s) 535
CviAII CATG 1 cut(s) 97
DdeI CTNAG 2 cut(s) 229, 552
DpnI GATC 7 cut(s) 226, 263, 312, 410, 494, 545, 550
DpnII GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
EaeI YGGCCR 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 324
Eco47III AGCGCT 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 100
FaiI YATR 7 cut(s) 79, 81, 98, 277, 362, 378, 451
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 263
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 160, 508
FokI GGATG 2 cut(s) 314, 412
Fsp4HI GCNGC 2 cut(s) 160, 508
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 515
GluI GCNGC 2 cut(s) 160, 508
GsuI CTGGAG 1 cut(s) 409
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 2 cut(s) 218, 323
HapII CCGG 1 cut(s) 536
HhaI GCGC 1 cut(s) 516
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 188, 290
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 208, 553
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 224, 430, 548
Hpy188III TCNNGA 3 cut(s) 97, 133, 388
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 229, 365
HpyCH4V TGCA 3 cut(s) 105, 422, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 513, 522
HpyF3I CTNAG 2 cut(s) 229, 552
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
LmnI GCTCC 2 cut(s) 152, 445
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 2 cut(s) 409, 431
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 242, 337
MalI GATC 7 cut(s) 226, 263, 312, 410, 494, 545, 550
MboI GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
MboII GAAGA 1 cut(s) 245
MflI RGATCY 3 cut(s) 224, 310, 408
MhlI GDGCHC 2 cut(s) 157, 375
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 2 cut(s) 383, 527
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 286, 318
MnlI CCTC 5 cut(s) 46, 49, 56, 257, 384
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 424
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 513, 522
NdeI CATATG 1 cut(s) 79
NdeII GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 2 cut(s) 441, 534
NmuCI GTSAC 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 424
PagI TCATGA 1 cut(s) 96
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 2 cut(s) 161, 509
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 441, 534
PsuI RGATCY 3 cut(s) 224, 310, 408
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 2 cut(s) 160, 508
Sau3AI GATC 7 cut(s) 224, 261, 310, 408, 492, 543, 548
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 2 cut(s) 157, 375
SetI ASST 4 cut(s) 48, 62, 249, 287
SfaNI GCATC 2 cut(s) 409, 431
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 383, 527
SsiI CCGC 2 cut(s) 159, 256
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 5 cut(s) 41, 132, 264, 288, 487
TasI AATT 2 cut(s) 383, 527
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 507
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 85, 113
TspRI CASTG 1 cut(s) 346
Van91I CCANNNNNTGG 1 cut(s) 387
XapI RAATTY 1 cut(s) 383
XspI CTAG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.