Rmu_co8389219.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8389219.1
OG0000217
Physical Location & Seq
Reverse (-)
562 .. 1194
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8389219.1_g000001.1.cds

Sequence Viewer

Length: 633 bp
atggccactgcaaatgccaccaacaacacctcagtagccaacactgtggaattcaagtttgcttacacggaaagtaagagctgtatgtggagtgccagccactcgtggatggtgggcgtgagtgccaccgttgacttcaaagttccgttcatcggcggtactgaggtcactgtttccgcagaatattccggatcatacgagtggggagagacaattacatccgaaaacacattggagaccacctacacggttacagtgccggcacacacttctatatctgtgagcctgatggcaaccaagggaaaatgtgacgtgccttactcgtattatcaacgggacgtgctttataacggtaaaactgttgtctataagaaagatgatgggctgtacacgggtgttaattcatacaacttccgttacgtggttactacacagaaagagtcggattctacagctgctgattcatcgccttctgagcagtggttgccggatccatcaatcttcccatcaaaacaacaaaagatacctctacccgtgccatttggatcaaccacaatgcaaagcccagtgacctcaaccaccgccccgaaaaaagagttgtcaatgaagatacagcagctcgatctgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

210

Amino Acids

23.04

Weight (kDa)

5.2

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 3 cut(s) 156, 177, 582
AclWI GGATC 4 cut(s) 199, 485, 498, 553
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 2 cut(s) 160, 389
AfiI CCNNNNNNNGG 2 cut(s) 152, 421
AgsI TTSAA 2 cut(s) 55, 139
AjiI CACGTC 2 cut(s) 313, 340
AluBI AGCT 3 cut(s) 81, 455, 619
AluI AGCT 3 cut(s) 81, 455, 619
Alw26I GTCTC 2 cut(s) 203, 230
AlwI GGATC 4 cut(s) 199, 485, 498, 553
AlwNI CAGNNNCTG 1 cut(s) 458
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 455, 616
ApoI RAATTY 1 cut(s) 50
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 490
BauI CACGAG 1 cut(s) 103
BbvI GCAGC 2 cut(s) 442, 628
BccI CCATC 5 cut(s) 103, 283, 374, 502, 514
BcoDI GTCTC 2 cut(s) 203, 230
BfmI CTRYAG 1 cut(s) 450
BisI GCNGC 2 cut(s) 456, 617
BlsI GCNGC 2 cut(s) 457, 618
BmgBI CACGTC 2 cut(s) 313, 340
BmiI GGNNCC 1 cut(s) 492
BmrI ACTGGG 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 560
BsaAI YACGTR 1 cut(s) 421
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 421
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 566
BseAI TCCGGA 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 114, 218
BseLI CCNNNNNNNGG 2 cut(s) 152, 421
BseMII CTCAG 3 cut(s) 45, 153, 465
BseNI ACTGG 1 cut(s) 566
BseXI GCAGC 2 cut(s) 442, 628
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 3 cut(s) 189, 260, 488
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 152, 421
BsmAI GTCTC 2 cut(s) 203, 230
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 4 cut(s) 191, 490, 545, 622
BspACI CCGC 3 cut(s) 156, 177, 582
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 44, 154, 466
BspEI TCCGGA 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 492
BspPI GGATC 4 cut(s) 199, 485, 498, 553
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 4 cut(s) 191, 490, 545, 622
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 103
Bst4CI ACNGT 7 cut(s) 46, 130, 172, 250, 256, 353, 361
BstAPI GCANNNNNTGC 1 cut(s) 484
BstAUI TGTACA 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 421
BstC8I GCNNGC 2 cut(s) 97, 261
BstDEI CTNAG 3 cut(s) 31, 162, 474
BstF5I GGATG 2 cut(s) 114, 218
BstKTI GATC 4 cut(s) 194, 493, 548, 625
BstMAI GTCTC 2 cut(s) 203, 230
BstMBI GATC 4 cut(s) 191, 490, 545, 622
BstMWI GCNNNNNNNGC 3 cut(s) 475, 484, 625
BstSFI CTRYAG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 442, 628
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 450
BtrI CACGTC 2 cut(s) 313, 340
BtsCI GGATG 2 cut(s) 114, 218
BtsI GCAGTG 2 cut(s) 6, 485
BtsIMutI CAGTG 6 cut(s) 6, 42, 168, 261, 485, 573
Cac8I GCNNGC 2 cut(s) 97, 261
CaiI CAGNNNCTG 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 259
Csp6I GTAC 2 cut(s) 159, 388
CviAII CATG 1 cut(s) 630
CviJI RGCY 9 cut(s) 5, 38, 81, 99, 285, 385, 455, 564, 619
CviKI_1 RGCY 9 cut(s) 5, 38, 81, 99, 285, 385, 455, 564, 619
CviQI GTAC 2 cut(s) 159, 388
DdeI CTNAG 3 cut(s) 31, 162, 474
DpnI GATC 4 cut(s) 193, 492, 547, 624
DpnII GATC 4 cut(s) 191, 490, 545, 622
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 633
FaiI YATR 7 cut(s) 86, 196, 275, 348, 369, 406, 631
FaqI GGGAC 1 cut(s) 350
FatI CATG 1 cut(s) 629
Fnu4HI GCNGC 2 cut(s) 456, 617
FokI GGATG 2 cut(s) 121, 205
Fsp4HI GCNGC 2 cut(s) 456, 617
GluI GCNGC 2 cut(s) 456, 617
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 189, 260, 488
Hin1II CATG 1 cut(s) 633
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 440, 446, 461
HpaII CCGG 3 cut(s) 189, 260, 488
Hpy166II GTNNAC 2 cut(s) 133, 390
Hpy188I TCNGA 3 cut(s) 223, 445, 475
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 2 cut(s) 133, 390
HpyAV CCTTC 1 cut(s) 480
HpyCH4III ACNGT 7 cut(s) 46, 130, 172, 250, 256, 353, 361
HpyCH4IV ACGT 3 cut(s) 312, 339, 420
HpyCH4V TGCA 2 cut(s) 11, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 475, 484, 625
HpyF3I CTNAG 3 cut(s) 31, 162, 474
HpySE526I ACGT 3 cut(s) 312, 339, 420
Hsp92II CATG 1 cut(s) 633
Kpn2I TCCGGA 1 cut(s) 188
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
Kzo9I GATC 4 cut(s) 191, 490, 545, 622
LpnPI CCDG 6 cut(s) 109, 202, 273, 299, 501, 579
Lsp1109I GCAGC 2 cut(s) 442, 628
MaeII ACGT 3 cut(s) 312, 339, 420
MaeIII GTNAC 6 cut(s) 166, 250, 308, 416, 424, 568
MalI GATC 4 cut(s) 193, 492, 547, 624
MboI GATC 4 cut(s) 191, 490, 545, 622
MboII GAAGA 2 cut(s) 493, 619
MflI RGATCY 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 50, 213, 400
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 4 cut(s) 40, 157, 537, 583
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 188
MroNI GCCGGC 1 cut(s) 259
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 199
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 3 cut(s) 189, 260, 488
MwoI GCNNNNNNNGC 3 cut(s) 475, 484, 625
NaeI GCCGGC 1 cut(s) 261
NdeII GATC 4 cut(s) 191, 490, 545, 622
NgoMIV GCCGGC 1 cut(s) 259
NlaIII CATG 1 cut(s) 633
NlaIV GGNNCC 1 cut(s) 492
NmuCI GTSAC 3 cut(s) 166, 308, 568
PdiI GCCGGC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 446, 461
PkrI GCNGC 2 cut(s) 457, 618
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Ppu21I YACGTR 1 cut(s) 421
PsiI TTATAA 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 492
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 160, 389
RsaNI GTAC 2 cut(s) 159, 388
RseI CAYNNNNRTG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 456, 617
Sau3AI GATC 4 cut(s) 191, 490, 545, 622
SchI GAGTC 1 cut(s) 449
SfcI CTRYAG 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 199
Sse9I AATT 3 cut(s) 50, 213, 400
SsiI CCGC 3 cut(s) 156, 177, 582
SspI AATATT 1 cut(s) 185
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 7 cut(s) 46, 130, 172, 250, 256, 353, 361
TaiI ACGT 3 cut(s) 315, 342, 423
TaqI TCGA 1 cut(s) 621
TasI AATT 3 cut(s) 50, 213, 400
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 2 cut(s) 446, 461
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 6 cut(s) 13, 49, 175, 261, 485, 573
TseFI GTSAC 3 cut(s) 166, 308, 568
TseI GCWGC 2 cut(s) 455, 616
Tsp45I GTSAC 3 cut(s) 166, 308, 568
TspDTI ATGAA 4 cut(s) 139, 393, 453, 620
TspGWI ACGGA 3 cut(s) 83, 135, 404
TspRI CASTG 6 cut(s) 13, 49, 175, 261, 485, 573
XapI RAATTY 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.