Rh5DG367600

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000217
Physical Location & Seq
Reverse (-)
54845120 .. 54856216
11097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG367600.1

Sequence Viewer

Length: 489 bp
ATGAAGTCTGATCCTTCCTCTCCTGGTATGCAATCACTCTTAACATTACAGACTAAGCGTGTAGACACTAGTGCGGCCGCTCTCCAATGCTTGAGCAACGACAAATTTTGCGCTCGATACACCTATAAGTATGATTATGCAGAAGGTCTGAATGCGCCTGACACTAGTACCAGCATTTCAAACTTGTCACGCATGAGGCTGGAAGAGCTTGTTCTCTCTAGGAAAATCTATAATGTTGACTTTGACCTTAAGAATGCCATAACCTATAGCGAGACCCCGGTCACCATGGCCATCGCAAATGCCAGCAACGACACCTCAGCAGAAAACACTGTGGAATTCAAGTTTGCATACAAGGACGGTAAGAGCAACATGTGGAAGGCCAGCCACTCGTGGATGGTAGGCCTGAGTGTCTCTGCCAGCTTCAAAATTCCATTCATCGGCGGTACTGACGTCACTACTTCAGCAGAGTATTCCGGATCCTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

162

Amino Acids

17.86

Weight (kDa)

5.46

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 473
AciI CCGC 3 cut(s) 74, 78, 441
AclWI GGATC 3 cut(s) 5, 471, 484
AcoI YGGCCR 2 cut(s) 75, 288
AcsI RAATTY 3 cut(s) 104, 335, 426
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 2 cut(s) 169, 445
AfiI CCNNNNNNNGG 1 cut(s) 437
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 3 cut(s) 180, 340, 424
AhlI ACTAGT 2 cut(s) 68, 164
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 208, 420
AluI AGCT 2 cut(s) 208, 420
Alw26I GTCTC 2 cut(s) 266, 415
AlwI GGATC 3 cut(s) 5, 471, 484
Aor13HI TCCGGA 1 cut(s) 473
AoxI GGCC 4 cut(s) 75, 288, 378, 400
ApoI RAATTY 3 cut(s) 104, 335, 426
AspLEI GCGC 2 cut(s) 113, 157
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 274
BaeI ACNNNNGTAYC 4 cut(s) 151, 184, 435, 468
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 476
BauI CACGAG 1 cut(s) 388
BbvCI CCTCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 299, 388
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 266, 415
BcuI ACTAGT 2 cut(s) 68, 164
BfaI CTAG 3 cut(s) 69, 165, 219
BfmI CTRYAG 1 cut(s) 265
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 75, 78
BlsI GCNGC 2 cut(s) 76, 79
Bme1390I CCNGG 2 cut(s) 24, 278
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 2 cut(s) 24, 278
BoxI GACNNNNGTC 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 276, 285
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 473
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 276, 285
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMII CTCAG 2 cut(s) 330, 395
BseX3I CGGCCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 4 cut(s) 77, 290, 380, 402
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 2 cut(s) 278, 474
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 2 cut(s) 266, 415
BsmI GAATGC 2 cut(s) 157, 259
BsnI GGCC 4 cut(s) 77, 290, 380, 402
Bso31I GGTCTC 1 cut(s) 266
Bsp13I TCCGGA 1 cut(s) 473
Bsp143I GATC 2 cut(s) 10, 476
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 3 cut(s) 74, 78, 441
BspANI GGCC 4 cut(s) 77, 290, 380, 402
BspCNI CTCAG 2 cut(s) 329, 396
BspEI TCCGGA 1 cut(s) 473
BspLI GGNNCC 1 cut(s) 478
BspPI GGATC 3 cut(s) 5, 471, 484
BspQI GCTCTTC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 276, 285
BssMI GATC 2 cut(s) 10, 476
BssNI GRCGYC 1 cut(s) 450
BssSI CACGAG 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 331, 359
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 450
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 304, 382, 418
BstDEI CTNAG 3 cut(s) 54, 316, 404
BstDSI CCRYGG 1 cut(s) 285
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 1 cut(s) 399
BstHHI GCGC 2 cut(s) 113, 157
BstKTI GATC 2 cut(s) 13, 479
BstMAI GTCTC 2 cut(s) 266, 415
BstMBI GATC 2 cut(s) 10, 476
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 373
BstPAI GACNNNNGTC 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 22, 276
BstSFI CTRYAG 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 4 cut(s) 77, 290, 380, 402
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 277
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 3 cut(s) 304, 382, 418
CciNI GCGGCCGC 1 cut(s) 75
CfoI GCGC 2 cut(s) 113, 157
Csp6I GTAC 2 cut(s) 168, 444
CviAII CATG 3 cut(s) 193, 286, 370
CviJI RGCY 8 cut(s) 77, 199, 208, 290, 380, 384, 402, 420
CviKI_1 RGCY 8 cut(s) 77, 199, 208, 290, 380, 384, 402, 420
CviQI GTAC 2 cut(s) 168, 444
DdeI CTNAG 3 cut(s) 54, 316, 404
DpnI GATC 2 cut(s) 12, 478
DpnII GATC 2 cut(s) 10, 476
EaeI YGGCCR 2 cut(s) 75, 288
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 266
Eco52I CGGCCG 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 444
Eco91I GGTNACC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 3 cut(s) 196, 289, 373
FatI CATG 3 cut(s) 192, 285, 369
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 75, 78
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 2 cut(s) 75, 78
FspBI CTAG 3 cut(s) 69, 165, 219
GlaI GCGC 2 cut(s) 112, 156
GluI GCNGC 2 cut(s) 75, 78
HaeIII GGCC 4 cut(s) 77, 290, 380, 402
HapII CCGG 2 cut(s) 278, 474
HhaI GCGC 2 cut(s) 113, 157
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 3 cut(s) 196, 289, 373
Hin6I GCGC 2 cut(s) 111, 155
HinP1I GCGC 2 cut(s) 111, 155
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaII CCGG 2 cut(s) 278, 474
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 64, 238
Hpy188I TCNGA 2 cut(s) 10, 150
Hpy188III TCNNGA 1 cut(s) 474
Hpy8I GTNNAC 2 cut(s) 64, 238
HpyAV CCTTC 3 cut(s) 24, 137, 370
HpyCH4III ACNGT 2 cut(s) 331, 359
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 31, 140, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 3 cut(s) 54, 316, 404
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 3 cut(s) 196, 289, 373
HspAI GCGC 2 cut(s) 111, 155
Kpn2I TCCGGA 1 cut(s) 473
Kzo9I GATC 2 cut(s) 10, 476
LguI GCTCTTC 1 cut(s) 198
MaeI CTAG 3 cut(s) 69, 165, 219
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 3 cut(s) 186, 280, 451
MalI GATC 2 cut(s) 12, 478
MbiI CCGCTC 1 cut(s) 80
MboI GATC 2 cut(s) 10, 476
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 476
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 3 cut(s) 104, 335, 426
MluNI TGGCCA 1 cut(s) 290
MnlI CCTC 3 cut(s) 28, 189, 325
Mox20I TGGCCA 1 cut(s) 290
MroI TCCGGA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 290
MseI TTAA 2 cut(s) 41, 249
Msp20I TGGCCA 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 2 cut(s) 278, 474
MspR9I CCNGG 2 cut(s) 24, 278
Mva1269I GAATGC 2 cut(s) 157, 259
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 278
NcoI CCATGG 1 cut(s) 285
NdeII GATC 2 cut(s) 10, 476
NlaIII CATG 3 cut(s) 196, 289, 373
NlaIV GGNNCC 1 cut(s) 478
NmuCI GTSAC 3 cut(s) 186, 280, 451
NotI GCGGCCGC 1 cut(s) 75
NspI RCATGY 1 cut(s) 373
PceI AGGCCT 1 cut(s) 402
PciI ACATGT 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 198
PctI GAATGC 2 cut(s) 157, 259
PkrI GCNGC 2 cut(s) 76, 79
PscI ACATGT 1 cut(s) 369
PshAI GACNNNNGTC 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 478
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 2 cut(s) 169, 445
RsaNI GTAC 2 cut(s) 168, 444
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 41, 249
SatI GCNGC 2 cut(s) 75, 78
Sau3AI GATC 2 cut(s) 10, 476
ScrFI CCNGG 2 cut(s) 24, 278
SetI ASST 8 cut(s) 125, 148, 210, 249, 266, 317, 422, 453
SfcI CTRYAG 1 cut(s) 265
SmlI CTYRAG 2 cut(s) 91, 248
SmoI CTYRAG 2 cut(s) 91, 248
SpeI ACTAGT 2 cut(s) 68, 164
Sse9I AATT 3 cut(s) 104, 335, 426
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 3 cut(s) 74, 78, 441
SspMI CTAG 3 cut(s) 69, 165, 219
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 22, 276
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 331, 359
TaiI ACGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 104, 335, 426
TauI GCSGC 2 cut(s) 77, 80
Tru1I TTAA 2 cut(s) 41, 249
Tru9I TTAA 2 cut(s) 41, 249
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 3 cut(s) 186, 280, 451
Tsp45I GTSAC 3 cut(s) 186, 280, 451
TspDTI ATGAA 2 cut(s) 17, 424
TspRI CASTG 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 248
XapI RAATTY 3 cut(s) 104, 335, 426
XceI RCATGY 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 3 cut(s) 69, 165, 219
ZraI GACGTC 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.