RchiOBHm_Chr2g0163571

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000217
Physical Location & Seq
Forward (+)
79001619 .. 79003318
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53173

Sequence Viewer

Length: 1611 bp
ATGTTGTTCCTATTACCACCCACTATTGCACTCAGGTTCCCCAGTTTCAACGACTCCTACTTGATCTACAGGAATGATTCTGATTCCGAGAGGCGTGGCTTTCTCAGAGTCAGCGGATCCAATGTCTTCAGCCCATTAGCAAAGTTCGAAGTGGTGACGGCCAATACTGGGACGGGACTAGTACATATCAGATGCTCTCATAACAGAAAGTTCCAGCGAAGATTTGAGAATGATCTGTACCTTACTCCGGAGGCTGATGAACCAGAGGAGGACCAATCCAAATGGTCGTGTACATTATTTGAGCCTCTATTTGCTGAAGATGGCAACCCCAACAAAGCCCGGTTGTTCCATGTCCAATCAAAAAATTATGCAACGCCATGGGTCTACACAGTTGGAGCAGTAAGTGTCTTGGGATTAGTTTGGAATCCGGCTCCACAGAATATCTTCTATATCATCGACTTGAAGTCATTGGTGATATTGCCAAAGCATGTGGCTTTCAAAGGCGACAACGGCAATTACCTTATGGCGGAAGCTACGACGACGTCGAACCCGACCTTCTCGTCCACCGACAAGGGGAGGCCTGAGTCGTGGTTCGAGGTCTCCACGGATGGCCATGGTAGGGTGCAAATCAAGTCTTTTGATACCAACAGGTACCTGAGGAACGAGGCTGGCCGCAACTGGATTTTGGCTGACTCAGCCGGCAACGCCACCGACCTGACCACCTTGTTTTGGCCAGTCAAGGTCGACCCTAGTACGGTCGCTCTCAAAAGCTTGAGCAACGACAGATTTTGCTCTCGATACACCAACCTTAGTGTAACAAACGGTCTGAACGCAAGGCTGACCAGTATTACAGTACACTCACGCATGGCGCTGGAAGAGCTTGTTCTCTCTAGGACAATCTACAATACTGAATTTGACCTCGCCAATGCCATAATCTACGGCGAGACCCCGGTCACTATGGCCACCGCAAACGCCAGCAACAACACCTCAGCAGACAACACTGTGGAATTCAAGTTCGCGTACACGGAGAGTAAGAGCAGCACATGGACCTCCAGCCACTCTTGGATGGTAGGCGTGAGTGTCACCGTCAGCTTAAGAATTCCATTCGGACTCGGCGGTGTTGAAAATACATATTCTGGGGAGTATAACGGATCCTACGAATGGGGAGAAACAATTACAACCGAAAACACATTGGAGACTACCTACACCGCCACTGTGCCAGCAAACACTTCTATATCTGTGAGCTTGATGGCGACCAAGGGATATTCCGACGTGCCTTACTCTTACTATCAGCGAGACGTGCTTTATAACGGTAAAATCGTTGTCTATAAGAAGGATGATGGGCTGTACACGGGAATAAATTCATACAACTTCCACTACGTGGTTACAACTCTGAGAGAGCAAGAATCTAGAGCTGATTTGTCGACCAAAGAGCAGCAGTTGCCAGACCCATCTGTCGACCCGTCCAAACAACAAAGGCTACCTATGCCTGTGCCGTCTGGATCAACCACCAGAGTGCAAAACAAGGTGACCTCGACCACCACCCTGGAACAAGAGTTGTCAAAGCTGGGATTAGAAGATGCAGCAGGTCGATCTACCACGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

536

Amino Acids

59.78

Weight (kDa)

5.75

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 7 - 134 2.3e-20 Agglutinin domain
Aerolysin PF01117 304 - 429 1.9e-06 Aerolysin toxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1308
AasI GACNNNNNNGTC 2 cut(s) 559, 1454
AatII GACGTC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 1577
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 1381
AccI GTMKAC 4 cut(s) 384, 744, 1424, 1458
AccII CGCG 1 cut(s) 1019
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 6 cut(s) 114, 527, 673, 966, 1116, 1209
AclWI GGATC 5 cut(s) 111, 124, 1146, 1159, 1510
AcoI YGGCCR 5 cut(s) 159, 610, 670, 731, 960
AcsI RAATTY 4 cut(s) 911, 1007, 1098, 1360
AcuI CTGAAG 2 cut(s) 112, 336
AcyI GRCGYC 1 cut(s) 542
AdeI CACNNNGTG 1 cut(s) 1381
AfaI GTAC 8 cut(s) 183, 239, 292, 653, 754, 855, 1022, 1349
AfiI CCNNNNNNNGG 9 cut(s) 168, 247, 526, 573, 619, 729, 754, 1161, 1381
AflII CTTAAG 1 cut(s) 1093
AgsI TTSAA 5 cut(s) 49, 463, 499, 1012, 1124
AhdI GACNNNNNGTC 1 cut(s) 463
AhlI ACTAGT 1 cut(s) 178
AjiI CACGTC 2 cut(s) 1273, 1300
AjnI CCWGG 1 cut(s) 1545
AleI CACNNNNGTG 1 cut(s) 1514
AloI GAACNNNNNNTCC 2 cut(s) 998, 1030
AluBI AGCT 7 cut(s) 533, 771, 880, 1092, 1245, 1415, 1567
AluI AGCT 7 cut(s) 533, 771, 880, 1092, 1245, 1415, 1567
Alw26I GTCTC 4 cut(s) 604, 938, 1190, 1290
AlwI GGATC 5 cut(s) 111, 124, 1146, 1159, 1510
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 6 cut(s) 159, 578, 610, 670, 731, 960
ApeKI GCWGC 3 cut(s) 1038, 1435, 1583
ApoI RAATTY 4 cut(s) 911, 1007, 1098, 1360
Asp700I GAANNNNTTC 2 cut(s) 443, 1360
Asp718I GGTACC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 2 cut(s) 271, 1047
AsuC2I CCSGG 2 cut(s) 340, 950
AsuHPI GGTGA 4 cut(s) 166, 484, 1075, 1540
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 271, 1047
AxyI CCTNAGG 1 cut(s) 656
BalI TGGCCA 3 cut(s) 612, 733, 962
BamHI GGATCC 2 cut(s) 116, 1151
BanI GGYRCC 1 cut(s) 651
BbsI GAAGAC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 988
BbvI GCAGC 3 cut(s) 1050, 1447, 1595
BccI CCATC 6 cut(s) 314, 602, 1060, 1243, 1334, 1459
BceAI ACGGC 4 cut(s) 174, 526, 955, 1480
BciT130I CCWGG 1 cut(s) 1547
BcnI CCSGG 2 cut(s) 340, 950
BcoDI GTCTC 4 cut(s) 604, 938, 1190, 1290
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 5 cut(s) 179, 750, 891, 1410, 1609
BfmI CTRYAG 1 cut(s) 67
BfoI RGCGCY 1 cut(s) 872
BfrI CTTAAG 1 cut(s) 1093
BfuAI ACCTGC 1 cut(s) 1577
BisI GCNGC 4 cut(s) 673, 1039, 1436, 1584
BlsI GCNGC 4 cut(s) 674, 1040, 1437, 1585
Bme1390I CCNGG 3 cut(s) 340, 950, 1547
Bme18I GGWCC 2 cut(s) 271, 1047
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgBI CACGTC 2 cut(s) 1273, 1300
BmgT120I GGNCC 2 cut(s) 271, 1047
BmiI GGNNCC 5 cut(s) 38, 118, 432, 653, 1153
BmrFI CCNGG 3 cut(s) 340, 950, 1547
BmrI ACTGGG 2 cut(s) 36, 177
BmsI GCATC 2 cut(s) 182, 1570
BmuI ACTGGG 2 cut(s) 36, 177
BoxI GACNNNNGTC 1 cut(s) 950
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 1036
Bpu10I CCTNAGC 1 cut(s) 988
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 793
BpuMI CCSGG 2 cut(s) 340, 950
BsaAI YACGTR 1 cut(s) 1381
BsaHI GRCGYC 1 cut(s) 542
BsaI GGTCTC 2 cut(s) 604, 938
BsaJI CCNNGG 6 cut(s) 377, 603, 613, 948, 1257, 1545
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 9 cut(s) 168, 247, 526, 573, 619, 729, 754, 1161, 1381
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 5 cut(s) 42, 172, 683, 734, 843
Bse21I CCTNAGG 1 cut(s) 656
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 1547
BseDI CCNNGG 6 cut(s) 377, 603, 613, 948, 1257, 1545
BseGI GGATG 3 cut(s) 613, 1071, 1342
BseLI CCNNNNNNNGG 9 cut(s) 168, 247, 526, 573, 619, 729, 754, 1161, 1381
BseMII CTCAG 7 cut(s) 46, 118, 573, 647, 708, 1002, 1385
BseNI ACTGG 5 cut(s) 42, 172, 683, 734, 843
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 3 cut(s) 1050, 1447, 1595
BseYI CCCAGC 1 cut(s) 1567
Bsh1236I CGCG 1 cut(s) 1019
Bsh1285I CGRYCG 1 cut(s) 759
BshFI GGCC 6 cut(s) 161, 580, 612, 672, 733, 962
BshNI GGYRCC 1 cut(s) 651
BsiEI CGRYCG 1 cut(s) 759
BsiSI CCGG 5 cut(s) 248, 340, 428, 699, 950
BslFI GGGAC 2 cut(s) 184, 189
BslI CCNNNNNNNGG 9 cut(s) 168, 247, 526, 573, 619, 729, 754, 1161, 1381
BsmAI GTCTC 4 cut(s) 604, 938, 1190, 1290
BsmBI CGTCTC 1 cut(s) 1290
BsmFI GGGAC 2 cut(s) 184, 189
BsnI GGCC 6 cut(s) 161, 580, 612, 672, 733, 962
Bso31I GGTCTC 2 cut(s) 604, 938
Bsp119I TTCGAA 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 247
Bsp1407I TGTACA 2 cut(s) 290, 1347
Bsp143I GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
Bsp19I CCATGG 2 cut(s) 377, 613
BspACI CCGC 6 cut(s) 114, 527, 673, 966, 1116, 1209
BspANI GGCC 6 cut(s) 161, 580, 612, 672, 733, 962
BspCNI CTCAG 7 cut(s) 45, 117, 574, 648, 707, 1001, 1386
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 1 cut(s) 1019
BspLI GGNNCC 5 cut(s) 38, 118, 432, 653, 1153
BspMI ACCTGC 1 cut(s) 1577
BspPI GGATC 5 cut(s) 111, 124, 1146, 1159, 1510
BspQI GCTCTTC 1 cut(s) 870
BspT104I TTCGAA 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 651
BspTI CTTAAG 1 cut(s) 1093
BspTNI GGTCTC 2 cut(s) 604, 938
BsrFI RCCGGY 1 cut(s) 698
BsrGI TGTACA 2 cut(s) 290, 1347
BsrI ACTGG 5 cut(s) 42, 172, 683, 734, 843
BssAI RCCGGY 1 cut(s) 698
BssECI CCNNGG 6 cut(s) 377, 603, 613, 948, 1257, 1545
BssMI GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
BssNI GRCGYC 1 cut(s) 542
BssT1I CCWWGG 3 cut(s) 377, 613, 1257
Bst2UI CCWGG 1 cut(s) 1547
Bst4CI ACNGT 8 cut(s) 391, 757, 824, 853, 1003, 1087, 1216, 1313
Bst6I CTCTTC 1 cut(s) 870
BstACI GRCGYC 1 cut(s) 542
BstAFI CTTAAG 1 cut(s) 1093
BstAPI GCANNNNNTGC 1 cut(s) 1441
BstAUI TGTACA 2 cut(s) 290, 1347
BstBAI YACGTR 1 cut(s) 1381
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 4 cut(s) 670, 700, 976, 1221
BstDEI CTNAG 8 cut(s) 32, 104, 582, 656, 694, 809, 988, 1394
BstDSI CCRYGG 3 cut(s) 377, 603, 613
BstEII GGTNACC 1 cut(s) 1528
BstF5I GGATG 3 cut(s) 613, 1071, 1342
BstFNI CGCG 1 cut(s) 1019
BstH2I RGCGCY 1 cut(s) 872
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 6 cut(s) 66, 119, 235, 1154, 1505, 1595
BstMAI GTCTC 4 cut(s) 604, 938, 1190, 1290
BstMBI GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
BstMCI CGRYCG 1 cut(s) 759
BstMWI GCNNNNNNNGC 7 cut(s) 510, 695, 704, 877, 1300, 1441, 1486
BstNI CCWGG 1 cut(s) 1547
BstNSI RCATGY 1 cut(s) 491
BstPAI GACNNNNGTC 1 cut(s) 950
BstPI GGTNACC 1 cut(s) 1528
BstSCI CCNGG 3 cut(s) 338, 948, 1545
BstSFI CTRYAG 1 cut(s) 67
BstUI CGCG 1 cut(s) 1019
BstV1I GCAGC 3 cut(s) 1050, 1447, 1595
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 116, 1151
BstXI CCANNNNNNTGG 1 cut(s) 1546
BstYI RGATCY 2 cut(s) 116, 1151
Bsu36I CCTNAGG 1 cut(s) 656
BsuRI GGCC 6 cut(s) 161, 580, 612, 672, 733, 962
BtgI CCRYGG 3 cut(s) 377, 603, 613
BtrI CACGTC 2 cut(s) 1273, 1300
BtsCI GGATG 3 cut(s) 613, 1071, 1342
BtsIMutI CAGTG 2 cut(s) 999, 1212
BveI ACCTGC 1 cut(s) 1577
Cac8I GCNNGC 4 cut(s) 670, 700, 976, 1221
CfoI GCGC 1 cut(s) 871
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 2 cut(s) 271, 1047
Csp6I GTAC 8 cut(s) 182, 238, 291, 652, 753, 854, 1021, 1348
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 6 cut(s) 350, 378, 488, 614, 865, 1044
CviQI GTAC 8 cut(s) 182, 238, 291, 652, 753, 854, 1021, 1348
DdeI CTNAG 8 cut(s) 32, 104, 582, 656, 694, 809, 988, 1394
DpnI GATC 6 cut(s) 65, 118, 234, 1153, 1504, 1594
DpnII GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
DraIII CACNNNGTG 1 cut(s) 1381
DrdI GACNNNNNNGTC 2 cut(s) 559, 1454
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 2 cut(s) 559, 1454
EaeI YGGCCR 5 cut(s) 159, 610, 670, 731, 960
Eam1104I CTCTTC 1 cut(s) 870
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 870
EciI GGCGGA 1 cut(s) 542
Eco130I CCWWGG 3 cut(s) 377, 613, 1257
Eco147I AGGCCT 1 cut(s) 580
Eco31I GGTCTC 2 cut(s) 604, 938
Eco47I GGWCC 2 cut(s) 271, 1047
Eco57I CTGAAG 2 cut(s) 112, 336
Eco81I CCTNAGG 1 cut(s) 656
Eco91I GGTNACC 1 cut(s) 1528
EcoO65I GGTNACC 1 cut(s) 1528
EcoRI GAATTC 2 cut(s) 1007, 1098
EcoRII CCWGG 1 cut(s) 1545
EcoT14I CCWWGG 3 cut(s) 377, 613, 1257
ErhI CCWWGG 3 cut(s) 377, 613, 1257
Esp3I CGTCTC 1 cut(s) 1290
FaeI CATG 6 cut(s) 353, 381, 491, 617, 868, 1047
FaqI GGGAC 2 cut(s) 184, 189
FatI CATG 6 cut(s) 349, 377, 487, 613, 864, 1043
FblI GTMKAC 4 cut(s) 384, 744, 1424, 1458
Fnu4HI GCNGC 4 cut(s) 673, 1039, 1436, 1584
FokI GGATG 3 cut(s) 620, 1078, 1349
Fsp4HI GCNGC 4 cut(s) 673, 1039, 1436, 1584
FspBI CTAG 5 cut(s) 179, 750, 891, 1410, 1609
GlaI GCGC 1 cut(s) 870
GluI GCNGC 4 cut(s) 673, 1039, 1436, 1584
GsaI CCCAGC 1 cut(s) 1571
GsuI CTGGAG 1 cut(s) 1036
HaeII RGCGCY 1 cut(s) 872
HaeIII GGCC 6 cut(s) 161, 580, 612, 672, 733, 962
HapII CCGG 5 cut(s) 248, 340, 428, 699, 950
HhaI GCGC 1 cut(s) 871
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 6 cut(s) 353, 381, 491, 617, 868, 1047
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HincII GTYRAC 3 cut(s) 745, 1425, 1459
HindII GTYRAC 3 cut(s) 745, 1425, 1459
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 9 cut(s) 53, 77, 83, 108, 424, 584, 692, 1110, 1406
HpaII CCGG 5 cut(s) 248, 340, 428, 699, 950
HphI GGTGA 4 cut(s) 166, 484, 1075, 1540
Hpy166II GTNNAC 9 cut(s) 291, 385, 564, 745, 856, 1023, 1350, 1425, 1459
Hpy188I TCNGA 8 cut(s) 82, 88, 107, 191, 828, 1109, 1270, 1395
Hpy188III TCNNGA 4 cut(s) 248, 795, 1410, 1500
Hpy8I GTNNAC 9 cut(s) 291, 385, 564, 745, 856, 1023, 1350, 1425, 1459
Hpy99I CGWCG 4 cut(s) 541, 544, 547, 1274
HpyAV CCTTC 2 cut(s) 565, 1327
HpyCH4III ACNGT 8 cut(s) 391, 757, 824, 853, 1003, 1087, 1216, 1313
HpyCH4IV ACGT 4 cut(s) 542, 1272, 1299, 1380
HpyCH4V TGCA 5 cut(s) 29, 371, 625, 1519, 1583
HpyF10VI GCNNNNNNNGC 7 cut(s) 510, 695, 704, 877, 1300, 1441, 1486
HpyF3I CTNAG 8 cut(s) 32, 104, 582, 656, 694, 809, 988, 1394
HpySE526I ACGT 4 cut(s) 542, 1272, 1299, 1380
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 6 cut(s) 353, 381, 491, 617, 868, 1047
HspAI GCGC 1 cut(s) 869
Kpn2I TCCGGA 1 cut(s) 247
KpnI GGTACC 1 cut(s) 655
KroI GCCGGC 1 cut(s) 698
KroNI GCCGGC 1 cut(s) 700
Kzo9I GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 2 cut(s) 395, 436
Lsp1109I GCAGC 3 cut(s) 1050, 1447, 1595
LweI GCATC 2 cut(s) 182, 1570
MaeI CTAG 5 cut(s) 179, 750, 891, 1410, 1609
MaeII ACGT 4 cut(s) 542, 1272, 1299, 1380
MaeIII GTNAC 6 cut(s) 154, 814, 952, 1081, 1384, 1528
MalI GATC 6 cut(s) 65, 118, 234, 1153, 1504, 1594
MboI GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
MboII GAAGA 6 cut(s) 118, 231, 329, 436, 887, 1589
MflI RGATCY 2 cut(s) 116, 1151
MlsI TGGCCA 3 cut(s) 612, 733, 962
MluCI AATT 7 cut(s) 364, 514, 911, 1007, 1098, 1173, 1360
MluNI TGGCCA 3 cut(s) 612, 733, 962
MlyI GAGTC 5 cut(s) 47, 117, 593, 686, 1104
MmeI TCCRAC 2 cut(s) 373, 1293
Mox20I TGGCCA 3 cut(s) 612, 733, 962
MroI TCCGGA 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 698
MroXI GAANNNNTTC 2 cut(s) 443, 1360
MscI TGGCCA 3 cut(s) 612, 733, 962
MseI TTAA 1 cut(s) 1094
MslI CAYNNNNRTG 1 cut(s) 1514
Msp20I TGGCCA 3 cut(s) 612, 733, 962
MspA1I CMGCKG 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 1093
MspI CCGG 5 cut(s) 248, 340, 428, 699, 950
MspR9I CCNGG 3 cut(s) 340, 950, 1547
MvaI CCWGG 1 cut(s) 1547
MvnI CGCG 1 cut(s) 1019
MwoI GCNNNNNNNGC 7 cut(s) 510, 695, 704, 877, 1300, 1441, 1486
NaeI GCCGGC 1 cut(s) 700
NciI CCSGG 2 cut(s) 340, 950
NcoI CCATGG 2 cut(s) 377, 613
NdeII GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
NgoMIV GCCGGC 1 cut(s) 698
NlaIII CATG 6 cut(s) 353, 381, 491, 617, 868, 1047
NlaIV GGNNCC 5 cut(s) 38, 118, 432, 653, 1153
NmeAIII GCCGAG 1 cut(s) 1092
NmuCI GTSAC 4 cut(s) 154, 952, 1081, 1528
NspI RCATGY 1 cut(s) 491
NspV TTCGAA 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 1514
PceI AGGCCT 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 870
PcsI WCGNNNNNNNCGW 4 cut(s) 542, 548, 1155, 1317
PdiI GCCGGC 1 cut(s) 700
PdmI GAANNNNTTC 2 cut(s) 443, 1360
PfeI GAWTC 4 cut(s) 77, 83, 424, 1406
PflFI GACNNNGTC 1 cut(s) 541
PflMI CCANNNNNTGG 1 cut(s) 1381
PkrI GCNGC 4 cut(s) 674, 1040, 1437, 1585
PleI GAGTC 5 cut(s) 47, 116, 592, 686, 1104
PpsI GAGTC 5 cut(s) 47, 116, 592, 686, 1104
Ppu21I YACGTR 1 cut(s) 1381
PshAI GACNNNNGTC 1 cut(s) 950
PsiI TTATAA 1 cut(s) 1308
Psp6I CCWGG 1 cut(s) 1545
PspEI GGTNACC 1 cut(s) 1528
PspFI CCCAGC 1 cut(s) 1567
PspGI CCWGG 1 cut(s) 1545
PspN4I GGNNCC 5 cut(s) 38, 118, 432, 653, 1153
PspPI GGNCC 2 cut(s) 271, 1047
PsuI RGATCY 2 cut(s) 116, 1151
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 8 cut(s) 183, 239, 292, 653, 754, 855, 1022, 1349
RsaNI GTAC 8 cut(s) 182, 238, 291, 652, 753, 854, 1021, 1348
RseI CAYNNNNRTG 1 cut(s) 1514
SalI GTCGAC 3 cut(s) 743, 1423, 1457
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 1 cut(s) 1094
SatI GCNGC 4 cut(s) 673, 1039, 1436, 1584
Sau3AI GATC 6 cut(s) 63, 116, 232, 1151, 1502, 1592
Sau96I GGNCC 2 cut(s) 271, 1047
SchI GAGTC 5 cut(s) 47, 117, 593, 686, 1104
ScrFI CCNGG 3 cut(s) 340, 950, 1547
SfaNI GCATC 2 cut(s) 182, 1570
SfcI CTRYAG 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 2 cut(s) 271, 1047
SmiMI CAYNNNNRTG 1 cut(s) 1514
SmlI CTYRAG 2 cut(s) 772, 1093
SmoI CTYRAG 2 cut(s) 772, 1093
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 7 cut(s) 364, 514, 911, 1007, 1098, 1173, 1360
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 6 cut(s) 114, 527, 673, 966, 1116, 1209
SspMI CTAG 5 cut(s) 179, 750, 891, 1410, 1609
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 3 cut(s) 338, 948, 1545
StyI CCWWGG 3 cut(s) 377, 613, 1257
TaaI ACNGT 8 cut(s) 391, 757, 824, 853, 1003, 1087, 1216, 1313
TaiI ACGT 4 cut(s) 545, 1275, 1302, 1383
TasI AATT 7 cut(s) 364, 514, 911, 1007, 1098, 1173, 1360
TatI WGTACW 4 cut(s) 181, 290, 853, 1347
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 4 cut(s) 77, 83, 424, 1406
Tru1I TTAA 1 cut(s) 1094
Tru9I TTAA 1 cut(s) 1094
TscAI CASTG 2 cut(s) 1006, 1219
TseFI GTSAC 4 cut(s) 154, 952, 1081, 1528
TseI GCWGC 3 cut(s) 1038, 1435, 1583
Tsp45I GTSAC 4 cut(s) 154, 952, 1081, 1528
TspDTI ATGAA 2 cut(s) 273, 1353
TspGWI ACGGA 3 cut(s) 620, 1040, 1164
TspRI CASTG 2 cut(s) 1006, 1219
Tth111I GACNNNGTC 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 1381
Vha464I CTTAAG 1 cut(s) 1093
VpaK11BI GGWCC 2 cut(s) 271, 1047
XapI RAATTY 4 cut(s) 911, 1007, 1098, 1360
XbaI TCTAGA 1 cut(s) 1409
XceI RCATGY 1 cut(s) 491
XmiI GTMKAC 4 cut(s) 384, 744, 1424, 1458
XmnI GAANNNNTTC 2 cut(s) 443, 1360
XspI CTAG 5 cut(s) 179, 750, 891, 1410, 1609
ZraI GACGTC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.