RchiOBHm_Chr5g0053101

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000217
Physical Location & Seq
Forward (+)
55360242 .. 55360538
297 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33040

Sequence Viewer

Length: 297 bp
ATGAGGCTGGAAGAGCTTGTTCTCTCTAGGAAAATCTATAATGTTGACTTTGACCTTAAGAATGCCATAACCTATAGCGAGACCCCGGTCACCATGGCCATCGCAAATGCCAGCAACGACACCTCAGCAGAAAACACTGTGGAATTCAAGTTTGCATACAAGGACGGTAAGAGCAACATGTGGAAGGCCAGCCACTCGTGGATGGTAGGCCTGAGTGTCTCTGCCAGCTTCAAAATTCCATTCATCGGCGGTACTGACGTCACTACTTCAGCAGAGTATTCCGGATCCTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

98

Amino Acids

10.86

Weight (kDa)

5.07

Isoelectric Point (pI)

10.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ETX_MTX2 PF03318 30 - 94 8.7e-06 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 281
AciI CCGC 1 cut(s) 249
AclWI GGATC 2 cut(s) 279, 292
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 143, 234
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 245
AflII CTTAAG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 2 cut(s) 148, 232
AluBI AGCT 2 cut(s) 16, 228
AluI AGCT 2 cut(s) 16, 228
Alw26I GTCTC 2 cut(s) 74, 223
AlwI GGATC 2 cut(s) 279, 292
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 3 cut(s) 96, 186, 208
ApoI RAATTY 2 cut(s) 143, 234
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BalI TGGCCA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 284
BauI CACGAG 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 107, 196
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 74, 223
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 73
BfrI CTTAAG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 86
BoxI GACNNNNGTC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 84, 93
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 84, 93
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 138, 203
BshFI GGCC 3 cut(s) 98, 188, 210
BsiSI CCGG 2 cut(s) 86, 282
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 2 cut(s) 74, 223
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 3 cut(s) 98, 188, 210
Bso31I GGTCTC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 284
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 249
BspANI GGCC 3 cut(s) 98, 188, 210
BspCNI CTCAG 2 cut(s) 137, 204
BspEI TCCGGA 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 2 cut(s) 279, 292
BspQI GCTCTTC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 84, 93
BssMI GATC 1 cut(s) 284
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 139, 167
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 112, 190, 226
BstDEI CTNAG 2 cut(s) 124, 212
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 1 cut(s) 287
BstMAI GTCTC 2 cut(s) 74, 223
BstMBI GATC 1 cut(s) 284
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 181
BstPAI GACNNNNGTC 1 cut(s) 86
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 3 cut(s) 98, 188, 210
BtgI CCRYGG 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 112, 190, 226
Csp6I GTAC 1 cut(s) 252
CviAII CATG 2 cut(s) 94, 178
CviJI RGCY 7 cut(s) 7, 16, 98, 188, 192, 210, 228
CviKI_1 RGCY 7 cut(s) 7, 16, 98, 188, 192, 210, 228
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 2 cut(s) 124, 212
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 97, 181
FaiI YATR 7 cut(s) 39, 68, 75, 95, 157, 179, 291
FatI CATG 2 cut(s) 93, 177
FokI GGATG 1 cut(s) 214
FspBI CTAG 1 cut(s) 27
HaeIII GGCC 3 cut(s) 98, 188, 210
HapII CCGG 2 cut(s) 86, 282
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 97, 181
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HpaII CCGG 2 cut(s) 86, 282
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 282
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 139, 167
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 124, 212
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 97, 181
Kpn2I TCCGGA 1 cut(s) 281
Kzo9I GATC 1 cut(s) 284
LguI GCTCTTC 1 cut(s) 6
LpnPI CCDG 5 cut(s) 99, 124, 202, 224, 238
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 88, 259
MalI GATC 1 cut(s) 286
MboI GATC 1 cut(s) 284
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 2 cut(s) 143, 234
MluNI TGGCCA 1 cut(s) 98
MnlI CCTC 1 cut(s) 133
Mox20I TGGCCA 1 cut(s) 98
MroI TCCGGA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 98
MseI TTAA 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 2 cut(s) 86, 282
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 86
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 284
NlaIII CATG 2 cut(s) 97, 181
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 88, 259
NspI RCATGY 1 cut(s) 181
PceI AGGCCT 1 cut(s) 210
PciI ACATGT 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 6
PctI GAATGC 1 cut(s) 67
PscI ACATGT 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 86
PspEI GGTNACC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 86
SetI ASST 6 cut(s) 18, 57, 74, 125, 230, 261
SfcI CTRYAG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 2 cut(s) 143, 234
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 27
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 139, 167
TaiI ACGT 1 cut(s) 261
TasI AATT 2 cut(s) 143, 234
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 88, 259
Tsp45I GTSAC 2 cut(s) 88, 259
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 1 cut(s) 142
Vha464I CTTAAG 1 cut(s) 56
XapI RAATTY 2 cut(s) 143, 234
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 27
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.