Rmu_sc0001475.1_g000017

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001475.1
OG0000217
Physical Location & Seq
Reverse (-)
87093 .. 88622
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001475.1_g000017.1.cds

Sequence Viewer

Length: 1530 bp
ctgaaatcatcctatttcaaccagtacgtgaactacagcaatgattctgattccgaaactcatggctttctcaaagtcaacggatcgaatgtcttcagctcgttagcaaagttcgaagtggtgactgccaatactgggacgggactagtccatataaggtgctcccagaacagaaagttcctgcgaacgagaattgagggtgatgtgtacgtttctccggaggctgatgaaccagaggaggagcaatccaaatggtcgtgcacactatttgaggctcaagtagctgtagatggcaaccccgacaaagcccggttgttccatgtccaagcaaagcgatatgcaacggtattggacgatggtggagtaaggttcttcaaattagatgacggtcagagtgatcagggtatcttcgatatcactgactggcagtcattggtgatattgccaaagcatgtggccttcaaagccagcaacaacctttaccttcagcttggggaaagtaatcagctcaggttcgtgtccaccgataaggggaatcctgcttcgtggttcgaagtgtccacagatggcgatggaatggtgaaaatcaagtgctacaagaacaattcctacctgaggttcggcggcagtgactacagcaactggatttttgctgacggaggcagcgcctcgaaacctcccaccttgtttttgccaatcaaggtcgacactagtgcggccgctctcaaatgcttgggcaacgacaaattttgcgccctacacacctatgagtatgattatacagacggtctgaacgcgcctgacagtagtaccagcatttcaaacttgtcacgctgggggctggaagagcttgttctctctaggagaatctataatgccgactttgaccttaagaatgccataatctacggcgagaccccggtcaccatggccaccgcaaacgccagcaacaacacctcagcagaaaacactgtggaattcaagtttgcatacaaggatggtaagagcagcacgtggaaggccagccactcgtggatggtaggcgtgagtgtctctgccagcttcaaaattccattcatcggcggtactgacgtcactgctcaagcagagtattccggatcctatgagtggggagagaccattacatccgaaaacacattggagaccacctacaaggctacagtgccggcaaacacttctatatctgtgagcctgatggcgaccaagggaacttgtgacgtgccttactcgtattatcagaaagacgtgctttataatggtaaatccgttatctataagaaggatgatggggtgtacacgggtgtcaattcatacaatttccgctacgagactacagcacggacagagccggtatctatagctgatttgctggacccgtcggccgaccctaccacagaacagatgttgccggacccatcggtcgaccccaccacagaacaaatgatacctgagcccgtaccgtctggatcaaccaccagggtgcaaaacaaggtcaaaaccatagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

509

Amino Acids

56.17

Weight (kDa)

4.95

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1275
AasI GACNNNNNNGTC 1 cut(s) 1439
AatII GACGTC 1 cut(s) 1095
AccBSI CCGCTC 1 cut(s) 722
AccI GTMKAC 2 cut(s) 705, 1443
AccII CGCG 1 cut(s) 797
AccIII TCCGGA 2 cut(s) 217, 1115
AciI CCGC 6 cut(s) 624, 716, 720, 936, 1083, 1342
AclWI GGATC 4 cut(s) 91, 1113, 1126, 1495
AcoI YGGCCR 3 cut(s) 717, 930, 1401
AcsI RAATTY 3 cut(s) 746, 977, 1068
AcuI CTGAAG 2 cut(s) 79, 470
AcvI CACGTG 1 cut(s) 1014
AcyI GRCGYC 1 cut(s) 1092
AfaI GTAC 6 cut(s) 26, 209, 811, 1087, 1316, 1479
AfiI CCNNNNNNNGG 5 cut(s) 135, 531, 615, 1079, 1128
AflII CTTAAG 1 cut(s) 890
AgsI TTSAA 6 cut(s) 19, 376, 463, 822, 982, 1066
AhdI GACNNNNNGTC 1 cut(s) 427
AhlI ACTAGT 2 cut(s) 145, 710
AjiI CACGTC 2 cut(s) 1240, 1267
AjnI CCWGG 1 cut(s) 1496
AleI CACNNNNGTG 1 cut(s) 1499
AluBI AGCT 8 cut(s) 99, 284, 490, 508, 850, 1062, 1382, 1526
AluI AGCT 8 cut(s) 99, 284, 490, 508, 850, 1062, 1382, 1526
Alw21I GWGCWC 2 cut(s) 164, 263
Alw26I GTCTC 5 cut(s) 908, 1057, 1130, 1157, 1343
Alw44I GTGCAC 1 cut(s) 259
AlwI GGATC 4 cut(s) 91, 1113, 1126, 1495
AlwNI CAGNNNCTG 1 cut(s) 642
Aor13HI TCCGGA 2 cut(s) 217, 1115
AoxI GGCC 5 cut(s) 456, 717, 930, 1020, 1401
ApaLI GTGCAC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 663, 1008
ApoI RAATTY 3 cut(s) 746, 977, 1068
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 3 cut(s) 668, 755, 799
AspS9I GGNCC 2 cut(s) 1393, 1432
AsuC2I CCSGG 2 cut(s) 310, 920
AsuHPI GGTGA 5 cut(s) 133, 212, 448, 592, 916
AsuII TTCGAA 2 cut(s) 114, 552
AvaII GGWCC 2 cut(s) 1393, 1432
AxyI CCTNAGG 1 cut(s) 614
BaeGI GKGCMC 1 cut(s) 263
BaeI ACNNNNGTAYC 4 cut(s) 793, 826, 1077, 1110
BalI TGGCCA 1 cut(s) 932
BamHI GGATCC 1 cut(s) 1118
BanII GRGCYC 1 cut(s) 1476
BauI CACGAG 1 cut(s) 1030
BbrPI CACGTG 1 cut(s) 1014
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 164, 263
BbvCI CCTCAGC 1 cut(s) 958
BbvI GCAGC 2 cut(s) 675, 1020
BccI CCATC 9 cut(s) 284, 350, 560, 566, 992, 1030, 1210, 1301, 1444
BceAI ACGGC 1 cut(s) 925
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 1498
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 2 cut(s) 310, 920
BcoDI GTCTC 5 cut(s) 908, 1057, 1130, 1157, 1343
BcuI ACTAGT 2 cut(s) 145, 710
BfaI CTAG 3 cut(s) 146, 711, 861
BfmI CTRYAG 6 cut(s) 34, 285, 634, 1179, 1353, 1377
BfoI RGCGCY 1 cut(s) 669
BfrI CTTAAG 1 cut(s) 890
BisI GCNGC 5 cut(s) 625, 664, 717, 720, 1009
BlsI GCNGC 5 cut(s) 626, 665, 718, 721, 1010
Bme1390I CCNGG 3 cut(s) 310, 920, 1498
Bme18I GGWCC 2 cut(s) 1393, 1432
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgBI CACGTC 2 cut(s) 1240, 1267
BmgT120I GGNCC 2 cut(s) 1393, 1432
BmiI GGNNCC 3 cut(s) 1120, 1395, 1434
BmrFI CCNGG 3 cut(s) 310, 920, 1498
BmrI ACTGGG 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 144
BoxI GACNNNNGTC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 85
Bpu10I CCTNAGC 3 cut(s) 509, 958, 1470
Bpu14I TTCGAA 2 cut(s) 114, 552
BpuEI CTTGAG 2 cut(s) 261, 1086
BpuMI CCSGG 2 cut(s) 310, 920
BsaAI YACGTR 2 cut(s) 28, 1014
BsaHI GRCGYC 1 cut(s) 1092
BsaI GGTCTC 3 cut(s) 908, 1130, 1157
BsaJI CCNNGG 4 cut(s) 918, 927, 1224, 1497
BsaWI WCCGGW 2 cut(s) 217, 1115
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 531, 615, 1079, 1128
Bse118I RCCGGY 2 cut(s) 1186, 1369
Bse1I ACTGG 4 cut(s) 22, 139, 428, 647
Bse21I CCTNAGG 1 cut(s) 614
Bse3DI GCAATG 1 cut(s) 46
BseAI TCCGGA 2 cut(s) 217, 1115
BseBI CCWGG 1 cut(s) 1498
BseDI CCNNGG 4 cut(s) 918, 927, 1224, 1497
BseGI GGATG 5 cut(s) 8, 1003, 1041, 1145, 1309
BseLI CCNNNNNNNGG 5 cut(s) 135, 531, 615, 1079, 1128
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 4 cut(s) 523, 605, 972, 1461
BseNI ACTGG 4 cut(s) 22, 139, 428, 647
BseRI GAGGAG 2 cut(s) 251, 254
BseSI GKGCMC 1 cut(s) 263
BseX3I CGGCCG 2 cut(s) 717, 1401
BseXI GCAGC 2 cut(s) 675, 1020
BseYI CCCAGC 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 797
Bsh1285I CGRYCG 3 cut(s) 720, 1404, 1443
BshFI GGCC 5 cut(s) 458, 719, 932, 1022, 1403
BsiEI CGRYCG 3 cut(s) 720, 1404, 1443
BsiHKAI GWGCWC 2 cut(s) 164, 263
BsiSI CCGG 7 cut(s) 218, 310, 920, 1116, 1187, 1370, 1430
BslFI GGGAC 2 cut(s) 151, 156
BslI CCNNNNNNNGG 5 cut(s) 135, 531, 615, 1079, 1128
BsmAI GTCTC 5 cut(s) 908, 1057, 1130, 1157, 1343
BsmFI GGGAC 2 cut(s) 151, 156
BsmI GAATGC 1 cut(s) 901
BsnI GGCC 5 cut(s) 458, 719, 932, 1022, 1403
Bso31I GGTCTC 3 cut(s) 908, 1130, 1157
Bsp119I TTCGAA 2 cut(s) 114, 552
Bsp1286I GDGCHC 3 cut(s) 164, 263, 1476
Bsp13I TCCGGA 2 cut(s) 217, 1115
Bsp1407I TGTACA 1 cut(s) 1314
Bsp143I GATC 4 cut(s) 83, 397, 1118, 1487
Bsp19I CCATGG 1 cut(s) 927
BspACI CCGC 6 cut(s) 624, 716, 720, 936, 1083, 1342
BspANI GGCC 5 cut(s) 458, 719, 932, 1022, 1403
BspCNI CTCAG 4 cut(s) 522, 606, 971, 1462
BspEI TCCGGA 2 cut(s) 217, 1115
BspFNI CGCG 1 cut(s) 797
BspLI GGNNCC 3 cut(s) 1120, 1395, 1434
BspPI GGATC 4 cut(s) 91, 1113, 1126, 1495
BspQI GCTCTTC 1 cut(s) 840
BspT104I TTCGAA 2 cut(s) 114, 552
BspTI CTTAAG 1 cut(s) 890
BspTNI GGTCTC 3 cut(s) 908, 1130, 1157
BsrBI CCGCTC 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 2 cut(s) 1186, 1369
BsrGI TGTACA 1 cut(s) 1314
BsrI ACTGG 4 cut(s) 22, 139, 428, 647
BssAI RCCGGY 2 cut(s) 1186, 1369
BssECI CCNNGG 4 cut(s) 918, 927, 1224, 1497
BssMI GATC 4 cut(s) 83, 397, 1118, 1487
BssNI GRCGYC 1 cut(s) 1092
BssSI CACGAG 1 cut(s) 1030
BssT1I CCWWGG 2 cut(s) 927, 1224
Bst2BI CACGAG 1 cut(s) 1030
Bst2UI CCWGG 1 cut(s) 1498
Bst4CI ACNGT 7 cut(s) 346, 389, 788, 806, 973, 1183, 1482
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 1 cut(s) 1092
BstAFI CTTAAG 1 cut(s) 890
BstAUI TGTACA 1 cut(s) 1314
BstBAI YACGTR 2 cut(s) 28, 1014
BstBI TTCGAA 2 cut(s) 114, 552
BstC8I GCNNGC 5 cut(s) 469, 946, 1024, 1060, 1188
BstDEI CTNAG 4 cut(s) 509, 614, 958, 1470
BstDSI CCRYGG 1 cut(s) 927
BstEII GGTNACC 1 cut(s) 922
BstENI CCTNNNNNAGG 1 cut(s) 613
BstF5I GGATG 5 cut(s) 8, 1003, 1041, 1145, 1309
BstFNI CGCG 1 cut(s) 797
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 3 cut(s) 668, 755, 799
BstKTI GATC 4 cut(s) 86, 400, 1121, 1490
BstMAI GTCTC 5 cut(s) 908, 1057, 1130, 1157, 1343
BstMBI GATC 4 cut(s) 83, 397, 1118, 1487
BstMCI CGRYCG 3 cut(s) 720, 1404, 1443
BstMWI GCNNNNNNNGC 3 cut(s) 281, 464, 847
BstNI CCWGG 1 cut(s) 1498
BstNSI RCATGY 1 cut(s) 455
BstPAI GACNNNNGTC 1 cut(s) 920
BstPI GGTNACC 1 cut(s) 922
BstSCI CCNGG 3 cut(s) 308, 918, 1496
BstSFI CTRYAG 6 cut(s) 34, 285, 634, 1179, 1353, 1377
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 2 cut(s) 675, 1020
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 1118
BstYI RGATCY 1 cut(s) 1118
BstZI CGGCCG 2 cut(s) 717, 1401
Bsu36I CCTNAGG 1 cut(s) 614
BsuRI GGCC 5 cut(s) 458, 719, 932, 1022, 1403
BtgI CCRYGG 1 cut(s) 927
BtgZI GCGATG 1 cut(s) 585
BtrI CACGTC 2 cut(s) 1240, 1267
BtsCI GGATG 5 cut(s) 8, 1003, 1041, 1145, 1309
BtsI GCAGTG 2 cut(s) 634, 1095
BtsIMutI CAGTG 5 cut(s) 417, 634, 969, 1095, 1188
Cac8I GCNNGC 5 cut(s) 469, 946, 1024, 1060, 1188
CaiI CAGNNNCTG 1 cut(s) 642
CciNI GCGGCCGC 1 cut(s) 717
CfoI GCGC 3 cut(s) 668, 755, 799
Cfr10I RCCGGY 2 cut(s) 1186, 1369
Cfr13I GGNCC 2 cut(s) 1393, 1432
Csp6I GTAC 6 cut(s) 25, 208, 810, 1086, 1315, 1478
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 4 cut(s) 62, 320, 452, 928
CviQI GTAC 6 cut(s) 25, 208, 810, 1086, 1315, 1478
DdeI CTNAG 4 cut(s) 509, 614, 958, 1470
DpnI GATC 4 cut(s) 85, 399, 1120, 1489
DpnII GATC 4 cut(s) 83, 397, 1118, 1487
DrdI GACNNNNNNGTC 1 cut(s) 1439
DriI GACNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 1439
EaeI YGGCCR 3 cut(s) 717, 930, 1401
EagI CGGCCG 2 cut(s) 717, 1401
Eam1104I CTCTTC 1 cut(s) 840
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 840
EclXI CGGCCG 2 cut(s) 717, 1401
Eco130I CCWWGG 2 cut(s) 927, 1224
Eco24I GRGCYC 1 cut(s) 1476
Eco31I GGTCTC 3 cut(s) 908, 1130, 1157
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 2 cut(s) 1393, 1432
Eco52I CGGCCG 2 cut(s) 717, 1401
Eco57I CTGAAG 2 cut(s) 79, 470
Eco72I CACGTG 1 cut(s) 1014
Eco81I CCTNAGG 1 cut(s) 614
Eco91I GGTNACC 1 cut(s) 922
EcoNI CCTNNNNNAGG 1 cut(s) 613
EcoO65I GGTNACC 1 cut(s) 922
EcoRI GAATTC 1 cut(s) 977
EcoRII CCWGG 1 cut(s) 1496
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 927, 1224
EcoT38I GRGCYC 1 cut(s) 1476
ErhI CCWWGG 2 cut(s) 927, 1224
FaeI CATG 4 cut(s) 65, 323, 455, 931
FalI AAGNNNNNCTT 2 cut(s) 1254, 1286
FaqI GGGAC 2 cut(s) 151, 156
FatI CATG 4 cut(s) 61, 319, 451, 927
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 2 cut(s) 705, 1443
Fnu4HI GCNGC 5 cut(s) 625, 664, 717, 720, 1009
FokI GGATG 4 cut(s) 1010, 1048, 1132, 1316
FriOI GRGCYC 1 cut(s) 1476
Fsp4HI GCNGC 5 cut(s) 625, 664, 717, 720, 1009
FspBI CTAG 3 cut(s) 146, 711, 861
GlaI GCGC 3 cut(s) 667, 754, 798
GluI GCNGC 5 cut(s) 625, 664, 717, 720, 1009
GsaI CCCAGC 1 cut(s) 838
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 5 cut(s) 458, 719, 932, 1022, 1403
HapII CCGG 7 cut(s) 218, 310, 920, 1116, 1187, 1370, 1430
HhaI GCGC 3 cut(s) 668, 755, 799
Hin1I GRCGYC 1 cut(s) 1092
Hin1II CATG 4 cut(s) 65, 323, 455, 931
Hin6I GCGC 3 cut(s) 666, 753, 797
HinP1I GCGC 3 cut(s) 666, 753, 797
HincII GTYRAC 3 cut(s) 79, 706, 1444
HindII GTYRAC 3 cut(s) 79, 706, 1444
HinfI GANTC 4 cut(s) 44, 50, 535, 867
HpaII CCGG 7 cut(s) 218, 310, 920, 1116, 1187, 1370, 1430
HphI GGTGA 5 cut(s) 133, 212, 448, 592, 916
Hpy188I TCNGA 6 cut(s) 49, 55, 393, 792, 1150, 1260
Hpy188III TCNNGA 3 cut(s) 218, 1116, 1485
Hpy99I CGWCG 1 cut(s) 1402
HpyAV CCTTC 4 cut(s) 469, 494, 1012, 1294
HpyCH4III ACNGT 7 cut(s) 346, 389, 788, 806, 973, 1183, 1482
HpyCH4IV ACGT 6 cut(s) 27, 210, 1013, 1092, 1239, 1266
HpyCH4V TGCA 4 cut(s) 261, 341, 989, 1504
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 464, 847
HpyF3I CTNAG 4 cut(s) 509, 614, 958, 1470
HpySE526I ACGT 6 cut(s) 27, 210, 1013, 1092, 1239, 1266
Hsp92I GRCGYC 1 cut(s) 1092
Hsp92II CATG 4 cut(s) 65, 323, 455, 931
HspAI GCGC 3 cut(s) 666, 753, 797
Kpn2I TCCGGA 2 cut(s) 217, 1115
KroI GCCGGC 1 cut(s) 1186
KroNI GCCGGC 1 cut(s) 1188
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 83, 397, 1118, 1487
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 2 cut(s) 167, 241
Lsp1109I GCAGC 2 cut(s) 675, 1020
MaeI CTAG 3 cut(s) 146, 711, 861
MaeII ACGT 6 cut(s) 27, 210, 1013, 1092, 1239, 1266
MaeIII GTNAC 6 cut(s) 121, 629, 828, 922, 1093, 1235
MalI GATC 4 cut(s) 85, 399, 1120, 1489
MbiI CCGCTC 1 cut(s) 722
MboI GATC 4 cut(s) 83, 397, 1118, 1487
MboII GAAGA 4 cut(s) 85, 364, 400, 857
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 3 cut(s) 164, 263, 1476
MlsI TGGCCA 1 cut(s) 932
MluCI AATT 8 cut(s) 192, 377, 604, 746, 977, 1068, 1327, 1336
MluNI TGGCCA 1 cut(s) 932
Mox20I TGGCCA 1 cut(s) 932
MroI TCCGGA 2 cut(s) 217, 1115
MroNI GCCGGC 1 cut(s) 1186
MroXI GAANNNNTTC 1 cut(s) 92
MscI TGGCCA 1 cut(s) 932
MseI TTAA 1 cut(s) 891
MslI CAYNNNNRTG 2 cut(s) 765, 1499
Msp20I TGGCCA 1 cut(s) 932
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 7 cut(s) 218, 310, 920, 1116, 1187, 1370, 1430
MspR9I CCNGG 3 cut(s) 310, 920, 1498
Mva1269I GAATGC 1 cut(s) 901
MvaI CCWGG 1 cut(s) 1498
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 3 cut(s) 281, 464, 847
NaeI GCCGGC 1 cut(s) 1188
NciI CCSGG 2 cut(s) 310, 920
NcoI CCATGG 1 cut(s) 927
NdeII GATC 4 cut(s) 83, 397, 1118, 1487
NgoMIV GCCGGC 1 cut(s) 1186
NlaIII CATG 4 cut(s) 65, 323, 455, 931
NlaIV GGNNCC 3 cut(s) 1120, 1395, 1434
NmuCI GTSAC 6 cut(s) 121, 629, 828, 922, 1093, 1235
NotI GCGGCCGC 1 cut(s) 717
NspI RCATGY 1 cut(s) 455
NspV TTCGAA 2 cut(s) 114, 552
OliI CACNNNNGTG 1 cut(s) 1499
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PctI GAATGC 1 cut(s) 901
PdiI GCCGGC 1 cut(s) 1188
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 4 cut(s) 44, 50, 535, 867
PkrI GCNGC 5 cut(s) 626, 665, 718, 721, 1010
PmaCI CACGTG 1 cut(s) 1014
PmlI CACGTG 1 cut(s) 1014
Ppu21I YACGTR 2 cut(s) 28, 1014
PshAI GACNNNNGTC 1 cut(s) 920
PsiI TTATAA 1 cut(s) 1275
Psp6I CCWGG 1 cut(s) 1496
PspCI CACGTG 1 cut(s) 1014
PspEI GGTNACC 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 1 cut(s) 1496
PspN4I GGNNCC 3 cut(s) 1120, 1395, 1434
PspPI GGNCC 2 cut(s) 1393, 1432
PsrI GAACNNNNNNTAC 4 cut(s) 593, 625, 1449, 1481
PstNI CAGNNNCTG 1 cut(s) 642
PsuI RGATCY 1 cut(s) 1118
RsaI GTAC 6 cut(s) 26, 209, 811, 1087, 1316, 1479
RsaNI GTAC 6 cut(s) 25, 208, 810, 1086, 1315, 1478
RseI CAYNNNNRTG 2 cut(s) 765, 1499
SalI GTCGAC 2 cut(s) 704, 1442
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 1 cut(s) 891
SatI GCNGC 5 cut(s) 625, 664, 717, 720, 1009
Sau3AI GATC 4 cut(s) 83, 397, 1118, 1487
Sau96I GGNCC 2 cut(s) 1393, 1432
ScrFI CCNGG 3 cut(s) 310, 920, 1498
SduI GDGCHC 3 cut(s) 164, 263, 1476
SfcI CTRYAG 6 cut(s) 34, 285, 634, 1179, 1353, 1377
SfuI TTCGAA 2 cut(s) 114, 552
SinI GGWCC 2 cut(s) 1393, 1432
SmiMI CAYNNNNRTG 2 cut(s) 765, 1499
SmlI CTYRAG 3 cut(s) 276, 890, 1101
SmoI CTYRAG 3 cut(s) 276, 890, 1101
SpeI ACTAGT 2 cut(s) 145, 710
Sse9I AATT 8 cut(s) 192, 377, 604, 746, 977, 1068, 1327, 1336
SsiI CCGC 6 cut(s) 624, 716, 720, 936, 1083, 1342
SspMI CTAG 3 cut(s) 146, 711, 861
StyD4I CCNGG 3 cut(s) 308, 918, 1496
StyI CCWWGG 2 cut(s) 927, 1224
TaaI ACNGT 7 cut(s) 346, 389, 788, 806, 973, 1183, 1482
TaiI ACGT 6 cut(s) 30, 213, 1016, 1095, 1242, 1269
TaqI TCGA 7 cut(s) 86, 114, 411, 552, 671, 705, 1443
TaqII GACCGA 1 cut(s) 1429
TasI AATT 8 cut(s) 192, 377, 604, 746, 977, 1068, 1327, 1336
TatI WGTACW 1 cut(s) 1314
TauI GCSGC 3 cut(s) 627, 719, 722
TfiI GAWTC 4 cut(s) 44, 50, 535, 867
Tru1I TTAA 1 cut(s) 891
Tru9I TTAA 1 cut(s) 891
TscAI CASTG 5 cut(s) 424, 634, 976, 1102, 1188
TseFI GTSAC 6 cut(s) 121, 629, 828, 922, 1093, 1235
TseI GCWGC 2 cut(s) 663, 1008
Tsp45I GTSAC 6 cut(s) 121, 629, 828, 922, 1093, 1235
TspDTI ATGAA 3 cut(s) 243, 1066, 1320
TspGWI ACGGA 4 cut(s) 96, 672, 1276, 1375
TspRI CASTG 5 cut(s) 424, 634, 976, 1102, 1188
Vha464I CTTAAG 1 cut(s) 890
VneI GTGCAC 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 1393, 1432
XagI CCTNNNNNAGG 1 cut(s) 613
XapI RAATTY 3 cut(s) 746, 977, 1068
XceI RCATGY 1 cut(s) 455
XmiI GTMKAC 2 cut(s) 705, 1443
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 3 cut(s) 146, 711, 861
ZraI GACGTC 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.