pycom10g01810

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000217
Physical Location & Seq
Reverse (-)
1896439 .. 1897821
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01810.2

Sequence Viewer

Length: 618 bp
ATGATCATATCTAAAGTCTACAACAAATATTTTAGTCAACACATTCACAGAAAGCAAATTAAACCATCAAGAGAGAAGAAAAAAAGATCGATCATCCCAATCCCAACTACACTATACAATATGGCTCCACCCGTACTACCAAGCCCCTTTCTGCTGAAAGCAGATACCAACAACAAGTATTTGCGCTATCAACTTGATGCAGAAAGCGACCTTAATGAGATTGTCCAGTTTTCCGAGGACAATGAAAACAGCAGGTTCATAAAGTTCACCACCGAGAAGCCAAACAATGAGGACTACGCCGACAAGAATTACGTGCATATCAAATGCTCCTACAACGGCAATTACTTGAGAAGGGTGGACCAAAACAGGCTATTGGTCCTGGCCGCAGCTGCTGACCGAAACGAAACCAAGGACAATTGGGCTTGCACATTGTTCAAGGTCGAGCCTGTCGGACCACCTGACGGCAACAATCTAATCACGCGCTGCCGATTACGTCACTTGCAAAGCGACCTCTTAACCAGGCCATTCATTGAAAACAGATTCGAATTACGCCTCAACCAAAAAACACCTGATGCTGGAGGGGTGGATATCTACTCAGTCTCCCAAGTCAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

206

Amino Acids

23.89

Weight (kDa)

9.28

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 481
AciI CCGC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 381
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 461, 575
AgsI TTSAA 2 cut(s) 436, 533
AjnI CCWGG 2 cut(s) 378, 518
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 604
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 2 cut(s) 381, 521
ApeKI GCWGC 3 cut(s) 386, 389, 483
AspLEI GCGC 2 cut(s) 186, 483
AspS9I GGNCC 3 cut(s) 358, 376, 452
AsuHPI GGTGA 1 cut(s) 259
AsuII TTCGAA 1 cut(s) 543
AvaII GGWCC 3 cut(s) 358, 376, 452
BbvI GCAGC 3 cut(s) 376, 398, 470
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 352, 478
BciT130I CCWGG 2 cut(s) 380, 520
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 604
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 4 cut(s) 384, 387, 390, 484
BlsI GCNGC 4 cut(s) 385, 388, 391, 485
Bme1390I CCNGG 2 cut(s) 380, 520
Bme18I GGWCC 3 cut(s) 358, 376, 452
BmgT120I GGNCC 3 cut(s) 358, 376, 452
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 380, 520
BmsI GCATC 2 cut(s) 187, 562
BpmI CTGGAG 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 367
Bsa29I ATCGAT 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 234, 408
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 461, 575
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 2 cut(s) 380, 520
BseCI ATCGAT 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 234, 408
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 461, 575
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 3 cut(s) 376, 398, 470
Bsh1236I CGCG 1 cut(s) 481
BshFI GGCC 2 cut(s) 383, 523
BshVI ATCGAT 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 461, 575
BsmAI GTCTC 1 cut(s) 604
BsnI GGCC 2 cut(s) 383, 523
Bsp119I TTCGAA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 3, 86, 90
BspACI CCGC 1 cut(s) 384
BspANI GGCC 2 cut(s) 383, 523
BspCNI CTCAG 1 cut(s) 608
BspDI ATCGAT 1 cut(s) 89
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 543
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 234, 408
BssMI GATC 3 cut(s) 3, 86, 90
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 2 cut(s) 380, 520
BstBAI YACGTR 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 595
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 481
BstHHI GCGC 2 cut(s) 186, 483
BstKTI GATC 3 cut(s) 6, 89, 93
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 3 cut(s) 3, 86, 90
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 2 cut(s) 380, 520
BstSCI CCNGG 2 cut(s) 378, 518
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 3 cut(s) 376, 398, 470
Bsu15I ATCGAT 1 cut(s) 89
BsuRI GGCC 2 cut(s) 383, 523
BsuTUI ATCGAT 1 cut(s) 89
BtsCI GGATG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 424
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 2 cut(s) 186, 483
Cfr13I GGNCC 3 cut(s) 358, 376, 452
ClaI ATCGAT 1 cut(s) 89
Csp6I GTAC 1 cut(s) 134
CviJI RGCY 9 cut(s) 125, 144, 280, 370, 383, 389, 422, 445, 523
CviKI_1 RGCY 9 cut(s) 125, 144, 280, 370, 383, 389, 422, 445, 523
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 595
DpnI GATC 3 cut(s) 5, 88, 92
DpnII GATC 3 cut(s) 3, 86, 90
EaeI YGGCCR 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 408
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 3 cut(s) 358, 376, 452
EcoRII CCWGG 2 cut(s) 378, 518
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaiI YATR 5 cut(s) 8, 115, 122, 260, 318
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 384, 387, 390, 484
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 384, 387, 390, 484
GlaI GCGC 2 cut(s) 185, 482
GluI GCNGC 4 cut(s) 384, 387, 390, 484
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 2 cut(s) 383, 523
HhaI GCGC 2 cut(s) 186, 483
Hin6I GCGC 2 cut(s) 184, 481
HinP1I GCGC 2 cut(s) 184, 481
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 1 cut(s) 540
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 4 cut(s) 19, 38, 267, 358
Hpy188I TCNGA 2 cut(s) 235, 452
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 4 cut(s) 19, 38, 267, 358
HpyAV CCTTC 1 cut(s) 345
HpyCH4IV ACGT 2 cut(s) 312, 493
HpyCH4V TGCA 4 cut(s) 200, 316, 426, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 595
HpySE526I ACGT 2 cut(s) 312, 493
HspAI GCGC 2 cut(s) 184, 481
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 86, 90
LmnI GCTCC 2 cut(s) 130, 332
Lsp1109I GCAGC 3 cut(s) 376, 398, 470
LweI GCATC 2 cut(s) 187, 562
MaeII ACGT 2 cut(s) 312, 493
MaeIII GTNAC 1 cut(s) 494
MalI GATC 3 cut(s) 5, 88, 92
MboI GATC 3 cut(s) 3, 86, 90
MboII GAAGA 1 cut(s) 88
MfeI CAATTG 1 cut(s) 415
MluCI AATT 5 cut(s) 57, 307, 340, 415, 545
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 5 cut(s) 229, 283, 521, 563, 572
MseI TTAA 3 cut(s) 60, 213, 515
MspA1I CMGCKG 1 cut(s) 389
MspR9I CCNGG 2 cut(s) 380, 520
MunI CAATTG 1 cut(s) 415
MvaI CCWGG 2 cut(s) 380, 520
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 3 cut(s) 3, 86, 90
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 494
NspV TTCGAA 1 cut(s) 543
PfeI GAWTC 1 cut(s) 540
PkrI GCNGC 4 cut(s) 385, 388, 391, 485
Ppu21I YACGTR 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 378, 518
PspGI CCWGG 2 cut(s) 378, 518
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 3 cut(s) 358, 376, 452
PstNI CAGNNNCTG 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 60, 213, 515
SatI GCNGC 4 cut(s) 384, 387, 390, 484
Sau3AI GATC 3 cut(s) 3, 86, 90
Sau96I GGNCC 3 cut(s) 358, 376, 452
ScrFI CCNGG 2 cut(s) 380, 520
SetI ASST 9 cut(s) 213, 257, 315, 391, 441, 460, 496, 513, 571
SfaNI GCATC 2 cut(s) 187, 562
SfuI TTCGAA 1 cut(s) 543
SinI GGWCC 3 cut(s) 358, 376, 452
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 5 cut(s) 57, 307, 340, 415, 545
SsiI CCGC 1 cut(s) 384
SspI AATATT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 378, 518
StyI CCWWGG 1 cut(s) 408
TaiI ACGT 2 cut(s) 315, 496
TaqI TCGA 3 cut(s) 89, 441, 543
TaqII GACCGA 1 cut(s) 411
TasI AATT 5 cut(s) 57, 307, 340, 415, 545
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 540
Tru1I TTAA 3 cut(s) 60, 213, 515
Tru9I TTAA 3 cut(s) 60, 213, 515
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 3 cut(s) 386, 389, 483
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 3 cut(s) 247, 258, 517
VpaK11BI GGWCC 3 cut(s) 358, 376, 452
XmiI GTMKAC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.