pycom07g06030

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000217
Physical Location & Seq
Forward (+)
5343052 .. 5343597
546 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06030.1

Sequence Viewer

Length: 546 bp
ATGGCATGTATGCAAATTCGGCATCGCCTAGTCAGGGATTGTTGGATGTGTACACTGATTGACTCGGAATCGCTGGTGATAGTTCCCAAGAACGTGACATTCAGAGGCCGTAATGGTAAGTACCTCAGCGCTCCATCTGTCGATGGGAACCCATATCAGCAGTTTGAATCGACTGACATTGCAGACTTAACAATTGGGAAGCAGGTCTTCACCAACGCCGACGGAAGCCTCCGCTGCATAAAGTCCAATTCCTCGGGTAAATTCTCAAGGCTTACAAAGGATGATTGGATTTGCGCCGACGAACCCACGGCTCCTTGGAGATCACGGCATGTTCAACTTTGTCACAGTTTCACTCCTCCAATACCACAGCTCACAACCTACACAACTTCAAACCTGAAACACTTCCTGCAGATCCGAGCTTTGGCAGCCCCAAACCCCAACTCAAGAAGCCCACACAAATTCGACACAAAACTATCGAAGCACAAACCTGCTTCCACGGCTTCAGTTGCTGCTTCTACAATCTGTGCACCAACACCAGACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2

Protein Analysis

182

Amino Acids

20.09

Weight (kDa)

9.3

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 31 - 101 2.2e-07 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 193, 496
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 406
AcsI RAATTY 3 cut(s) 15, 260, 458
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 2 cut(s) 52, 122
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 34, 421
AgsI TTSAA 3 cut(s) 167, 335, 390
AluBI AGCT 2 cut(s) 370, 419
AluI AGCT 2 cut(s) 370, 419
Alw21I GWGCWC 1 cut(s) 529
Alw44I GTGCAC 1 cut(s) 525
AlwI GGATC 1 cut(s) 406
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 253
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 1 cut(s) 106
ApaLI GTGCAC 1 cut(s) 525
ApeKI GCWGC 3 cut(s) 234, 425, 509
ApoI RAATTY 3 cut(s) 15, 260, 458
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 2 cut(s) 131, 296
AsuHPI GGTGA 2 cut(s) 88, 202
AvaI CYCGRG 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 529
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 221, 437, 496
BccI CCATC 2 cut(s) 137, 142
BceAI ACGGC 4 cut(s) 93, 324, 341, 513
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 132
BfuAI ACCTGC 2 cut(s) 193, 496
BisI GCNGC 3 cut(s) 235, 426, 510
BlsI GCNGC 3 cut(s) 236, 427, 511
BmeT110I CYCGRG 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 149, 312
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 250, 427
BsaJI CCNNGG 4 cut(s) 252, 306, 314, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 421
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 4 cut(s) 252, 306, 314, 495
BseGI GGATG 2 cut(s) 51, 286
BseLI CCNNNNNNNGG 2 cut(s) 34, 421
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 3 cut(s) 221, 437, 496
BshFI GGCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 34, 421
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 2 cut(s) 320, 411
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 149, 312
BspMAI CTGCAG 1 cut(s) 411
BspMI ACCTGC 2 cut(s) 193, 496
BspPI GGATC 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 252, 306, 314, 495
BssMI GATC 2 cut(s) 320, 411
BssT1I CCWWGG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 125
BstDSI CCRYGG 2 cut(s) 306, 495
BstF5I GGATG 2 cut(s) 51, 286
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 2 cut(s) 131, 296
BstKTI GATC 2 cut(s) 323, 414
BstMBI GATC 2 cut(s) 320, 411
BstMWI GCNNNNNNNGC 5 cut(s) 19, 234, 425, 497, 506
BstNSI RCATGY 2 cut(s) 9, 332
BstSFI CTRYAG 1 cut(s) 407
BstSLI GKGCMC 1 cut(s) 529
BstV1I GCAGC 3 cut(s) 221, 437, 496
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 306, 495
BtgZI GCGATG 1 cut(s) 8
BtsCI GGATG 2 cut(s) 51, 286
BtsIMutI CAGTG 1 cut(s) 53
BveI ACCTGC 2 cut(s) 193, 496
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 2 cut(s) 131, 296
Csp6I GTAC 2 cut(s) 51, 121
CviAII CATG 2 cut(s) 6, 329
CviJI RGCY 9 cut(s) 108, 228, 271, 311, 370, 419, 428, 450, 500
CviKI_1 RGCY 9 cut(s) 108, 228, 271, 311, 370, 419, 428, 450, 500
CviQI GTAC 2 cut(s) 51, 121
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 322, 413
DpnII GATC 2 cut(s) 320, 411
Eco130I CCWWGG 1 cut(s) 314
Eco47III AGCGCT 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 2 cut(s) 9, 332
FaiI YATR 5 cut(s) 7, 11, 154, 239, 330
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 2 cut(s) 5, 328
Fnu4HI GCNGC 3 cut(s) 235, 426, 510
FokI GGATG 2 cut(s) 58, 293
Fsp4HI GCNGC 3 cut(s) 235, 426, 510
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 130, 295
GluI GCNGC 3 cut(s) 235, 426, 510
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 108
HhaI GCGC 2 cut(s) 131, 296
Hin1II CATG 2 cut(s) 9, 332
Hin6I GCGC 2 cut(s) 129, 294
HinP1I GCGC 2 cut(s) 129, 294
HinfI GANTC 3 cut(s) 62, 68, 167
HphI GGTGA 2 cut(s) 88, 202
Hpy166II GTNNAC 3 cut(s) 51, 53, 527
Hpy188I TCNGA 3 cut(s) 67, 104, 416
Hpy188III TCNNGA 1 cut(s) 444
Hpy8I GTNNAC 3 cut(s) 51, 53, 527
Hpy99I CGWCG 2 cut(s) 224, 302
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 13, 182, 237, 409, 527
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 234, 425, 497, 506
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 2 cut(s) 9, 332
HspAI GCGC 2 cut(s) 129, 294
Kzo9I GATC 2 cut(s) 320, 411
LmnI GCTCC 2 cut(s) 136, 316
LpnPI CCDG 6 cut(s) 19, 59, 188, 407, 419, 501
Lsp1109I GCAGC 3 cut(s) 221, 437, 496
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 94, 341
MalI GATC 2 cut(s) 322, 413
MboI GATC 2 cut(s) 320, 411
MboII GAAGA 1 cut(s) 199
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 5 cut(s) 15, 192, 247, 260, 458
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 5 cut(s) 98, 134, 239, 262, 366
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 234
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 5 cut(s) 19, 234, 425, 497, 506
NdeII GATC 2 cut(s) 320, 411
NlaIII CATG 2 cut(s) 9, 332
NlaIV GGNNCC 2 cut(s) 149, 312
NmuCI GTSAC 2 cut(s) 94, 341
NspI RCATGY 2 cut(s) 9, 332
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 68, 167
PkrI GCNGC 3 cut(s) 236, 427, 511
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 149, 312
PstI CTGCAG 1 cut(s) 411
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 411
RsaI GTAC 2 cut(s) 52, 122
RsaNI GTAC 2 cut(s) 51, 121
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 3 cut(s) 235, 426, 510
Sau3AI GATC 2 cut(s) 320, 411
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 529
SetI ASST 8 cut(s) 96, 126, 207, 372, 380, 396, 421, 490
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 407
SmlI CTYRAG 2 cut(s) 265, 442
SmoI CTYRAG 2 cut(s) 265, 442
Sse9I AATT 5 cut(s) 15, 192, 247, 260, 458
SsiI CCGC 1 cut(s) 232
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 141, 170, 462, 476
TasI AATT 5 cut(s) 15, 192, 247, 260, 458
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 68, 167
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 2 cut(s) 94, 341
TseI GCWGC 3 cut(s) 234, 425, 509
Tsp45I GTSAC 2 cut(s) 94, 341
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 60
VneI GTGCAC 1 cut(s) 525
XapI RAATTY 3 cut(s) 15, 260, 458
XceI RCATGY 2 cut(s) 9, 332
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.