pycom14g20110

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000217
Physical Location & Seq
Reverse (-)
21221934 .. 21222905
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g20110.2

Sequence Viewer

Length: 882 bp
ATGGCAACTATACTACCAAGATCTTTTGCACTGAAATCAAACAACAACAAAAAATACTTGCGCTACATACATCAACGTATCGTGAATCTTGATGGGCTTGTCCAACTCTCCGAAGAGGATGTTAAAAGCGAGTACGCAAAGTTCCAAATGGAGCCGGCAGACAGCGATTACGGAGGACTCGTGCATATCAAATGCTGTTTCAACAACAAGTACTTGAGAAGTGAGATCGATCACCAGTACTGGATTGTAGCTGGAGCTTGTGAACCAGAAGAAGATAAAAAACATTGGTCCTGCACATTGTTCGAGCCTGTGGTTGTCCATTCAGACAACAAGGCAGTCTTCCGATTACTCCACGTGCAACTCGGGCACTTTGTGACGTCATTCACTGTTAACGACTTCAACCAGTGCCTCTTCGCAGAGACAAATACCCCCAACCTCCACAACGACATGGATGTGTACACAGTCGTCGACTTGGAACCGCTTATTCTCCAATTCTCCACACAGGATCGTACAAGCGAGTTCGCACAGTTCCAAGTGGAGCGGGCAAACAGTAGGGACCACCAAAATAACCATTACATTCATATCAAATGCTTGTACAACAACAAATACTTGAGAAGGATGGACATAAACAGGCCATTGATCCTTGCTGCGGCTGACGATGGAGACGAAAACACAGGCAGATGGACTTGCACATTGTTCAAGCCTGAGAGTGTCGGACCAACCAGCAACAACCACAACAACGTGCTCTGCCGACTACGCCATGTGGCAACTGGCCTCTATACAAAGCCATTTGTTGACAACAGATTAGAATTACGCCTGGGCGAAGAAAACCCTGACCCCCAAGAAGTTGATGTCTACACAGCCATTCGCACCCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

294

Amino Acids

34.01

Weight (kDa)

5.95

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 541
AccI GTMKAC 2 cut(s) 468, 855
AciI CCGC 3 cut(s) 479, 541, 650
AclWI GGATC 2 cut(s) 513, 634
AcvI CACGTG 1 cut(s) 355
AcyI GRCGYC 1 cut(s) 377
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 6 cut(s) 134, 212, 239, 458, 511, 596
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 3 cut(s) 202, 400, 700
AjnI CCWGG 1 cut(s) 816
AluBI AGCT 2 cut(s) 251, 257
AluI AGCT 2 cut(s) 251, 257
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 413, 657
AlwI GGATC 2 cut(s) 513, 634
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 2 cut(s) 632, 772
ApeKI GCWGC 1 cut(s) 647
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 3 cut(s) 288, 556, 716
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 3 cut(s) 288, 556, 716
BaeGI GKGCMC 1 cut(s) 369
BauI CACGAG 1 cut(s) 179
BbrPI CACGTG 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 1 cut(s) 634
BccI CCATC 4 cut(s) 86, 613, 653, 675
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 818
BcoDI GTCTC 2 cut(s) 413, 657
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 648, 651
BlsI GCNGC 2 cut(s) 649, 652
BmcAI AGTACT 2 cut(s) 212, 239
Bme1390I CCNGG 1 cut(s) 818
Bme18I GGWCC 3 cut(s) 288, 556, 716
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 3 cut(s) 288, 556, 716
BmiI GGNNCC 3 cut(s) 153, 477, 557
BmrFI CCNGG 1 cut(s) 818
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 235, 631
Bsa29I ATCGAT 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 355
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 817
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 4 cut(s) 235, 245, 403, 775
BseBI CCWGG 1 cut(s) 818
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 817
BseGI GGATG 3 cut(s) 124, 457, 624
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 4 cut(s) 235, 245, 403, 775
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 277
BshFI GGCC 2 cut(s) 634, 774
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 2 cut(s) 413, 657
BsmBI CGTCTC 1 cut(s) 657
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 2 cut(s) 634, 774
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 369, 747
Bsp1407I TGTACA 2 cut(s) 456, 594
Bsp143I GATC 5 cut(s) 20, 225, 229, 505, 639
BspACI CCGC 3 cut(s) 479, 541, 650
BspANI GGCC 2 cut(s) 634, 774
BspCNI CTCAG 1 cut(s) 697
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 153, 477, 557
BspPI GGATC 2 cut(s) 513, 634
BsrBI CCGCTC 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 154
BsrGI TGTACA 2 cut(s) 456, 594
BsrI ACTGG 4 cut(s) 235, 245, 403, 775
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 817
BssMI GATC 5 cut(s) 20, 225, 229, 505, 639
BssNI GRCGYC 1 cut(s) 377
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 818
Bst4CI ACNGT 4 cut(s) 388, 463, 528, 551
Bst6I CTCTTC 2 cut(s) 108, 416
BstACI GRCGYC 1 cut(s) 377
BstAUI TGTACA 2 cut(s) 456, 594
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 156, 543
BstDEI CTNAG 1 cut(s) 705
BstF5I GGATG 3 cut(s) 124, 457, 624
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 5 cut(s) 23, 228, 232, 508, 642
BstMAI GTCTC 2 cut(s) 413, 657
BstMBI GATC 5 cut(s) 20, 225, 229, 505, 639
BstMWI GCNNNNNNNGC 2 cut(s) 364, 756
BstNI CCWGG 1 cut(s) 818
BstSCI CCNGG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 2 cut(s) 634, 774
BsuTUI ATCGAT 1 cut(s) 228
BtsCI GGATG 3 cut(s) 124, 457, 624
BtsIMutI CAGTG 3 cut(s) 29, 384, 410
Cac8I GCNNGC 2 cut(s) 156, 543
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 288, 556, 716
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 6 cut(s) 133, 211, 238, 457, 510, 595
CviAII CATG 3 cut(s) 448, 761, 879
CviQI GTAC 6 cut(s) 133, 211, 238, 457, 510, 595
DdeI CTNAG 1 cut(s) 705
DpnI GATC 5 cut(s) 22, 227, 231, 507, 641
DpnII GATC 5 cut(s) 20, 225, 229, 505, 639
DraIII CACNNNGTG 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 108, 416
EarI CTCTTC 2 cut(s) 108, 416
Eco47I GGWCC 3 cut(s) 288, 556, 716
Eco72I CACGTG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 816
Esp3I CGTCTC 1 cut(s) 657
FaeI CATG 3 cut(s) 451, 764, 882
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 569
FatI CATG 3 cut(s) 447, 760, 878
FauI CCCGC 1 cut(s) 534
FblI GTMKAC 2 cut(s) 468, 855
Fnu4HI GCNGC 2 cut(s) 648, 651
FokI GGATG 3 cut(s) 131, 464, 631
Fsp4HI GCNGC 2 cut(s) 648, 651
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 648, 651
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 634, 774
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 3 cut(s) 451, 764, 882
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 3 cut(s) 391, 469, 796
HindII GTYRAC 3 cut(s) 391, 469, 796
HinfI GANTC 2 cut(s) 85, 177
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 7 cut(s) 263, 391, 457, 459, 469, 796, 856
Hpy188I TCNGA 4 cut(s) 112, 325, 344, 716
Hpy188III TCNNGA 2 cut(s) 82, 89
Hpy8I GTNNAC 7 cut(s) 263, 391, 457, 459, 469, 796, 856
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 1 cut(s) 609
HpyCH4III ACNGT 4 cut(s) 388, 463, 528, 551
HpyCH4IV ACGT 4 cut(s) 76, 354, 377, 741
HpyCH4V TGCA 5 cut(s) 29, 184, 294, 358, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 756
HpyF3I CTNAG 1 cut(s) 705
HpySE526I ACGT 4 cut(s) 76, 354, 377, 741
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 3 cut(s) 451, 764, 882
HspAI GCGC 1 cut(s) 61
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 20, 225, 229, 505, 639
LmnI GCTCC 3 cut(s) 151, 254, 538
Lsp1109I GCAGC 1 cut(s) 634
MaeII ACGT 4 cut(s) 76, 354, 377, 741
MaeIII GTNAC 1 cut(s) 373
MalI GATC 5 cut(s) 22, 227, 231, 507, 641
MbiI CCGCTC 1 cut(s) 541
MboI GATC 5 cut(s) 20, 225, 229, 505, 639
MboII GAAGA 6 cut(s) 125, 281, 284, 331, 403, 836
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 369, 747
MluCI AATT 2 cut(s) 491, 809
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 127, 694
MnlI CCTC 5 cut(s) 109, 167, 419, 446, 785
MroNI GCCGGC 1 cut(s) 154
MseI TTAA 2 cut(s) 123, 390
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 818
MvaI CCWGG 1 cut(s) 818
MwoI GCNNNNNNNGC 2 cut(s) 364, 756
NaeI GCCGGC 1 cut(s) 156
NdeII GATC 5 cut(s) 20, 225, 229, 505, 639
NgoMIV GCCGGC 1 cut(s) 154
NlaIII CATG 3 cut(s) 451, 764, 882
NlaIV GGNNCC 3 cut(s) 153, 477, 557
NmuCI GTSAC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 663
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 649, 652
PleI GAGTC 1 cut(s) 171
PmaCI CACGTG 1 cut(s) 355
PmlI CACGTG 1 cut(s) 355
PpsI GAGTC 1 cut(s) 171
Ppu21I YACGTR 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 816
PspCI CACGTG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 3 cut(s) 153, 477, 557
PspPI GGNCC 3 cut(s) 288, 556, 716
PsrI GAACNNNNNNTAC 2 cut(s) 125, 157
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 6 cut(s) 134, 212, 239, 458, 511, 596
RsaNI GTAC 6 cut(s) 133, 211, 238, 457, 510, 595
RseI CAYNNNNRTG 1 cut(s) 452
SalI GTCGAC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 123, 390
SatI GCNGC 2 cut(s) 648, 651
Sau3AI GATC 5 cut(s) 20, 225, 229, 505, 639
Sau96I GGNCC 3 cut(s) 288, 556, 716
ScaI AGTACT 2 cut(s) 212, 239
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 818
SduI GDGCHC 2 cut(s) 369, 747
SetI ASST 7 cut(s) 79, 253, 259, 357, 380, 438, 744
SinI GGWCC 3 cut(s) 288, 556, 716
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 214, 610
SmoI CTYRAG 2 cut(s) 214, 610
Sse9I AATT 2 cut(s) 491, 809
SsiI CCGC 3 cut(s) 479, 541, 650
StyD4I CCNGG 1 cut(s) 816
TaaI ACNGT 4 cut(s) 388, 463, 528, 551
TaiI ACGT 4 cut(s) 79, 357, 380, 744
TaqI TCGA 3 cut(s) 228, 303, 468
TasI AATT 2 cut(s) 491, 809
TatI WGTACW 4 cut(s) 210, 237, 456, 594
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 123, 390
Tru9I TTAA 2 cut(s) 123, 390
TscAI CASTG 3 cut(s) 36, 391, 410
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 569
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 3 cut(s) 36, 391, 410
VpaK11BI GGWCC 3 cut(s) 288, 556, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XmiI GTMKAC 2 cut(s) 468, 855
ZraI GACGTC 1 cut(s) 378
ZrmI AGTACT 2 cut(s) 212, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.