Rorug05G0418800

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000217
Physical Location & Seq
Reverse (-)
58299717 .. 58302041
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0418800.1

Sequence Viewer

Length: 258 bp
ATGATAAGCGTTCTTGCTCAGGAGCGTCTATTGGGCGCCGCACTCGGAAGCATACTCACCGGAATCGTTGTCTTTGAGCAGCGACGAAGCATCTACAACTCCATTTCTGGTACCCAACCTGAATCCGTTGCCCGATCTCAGATGAGAGAGCCCATATTTGGAAGGAAATCTCGCTCAGAGTTTGCGCACCTCTGGAACAAGGCTGTCGACCAGACATTTCGACCAGTGATTGAGTCCCTTAGTTCATCTGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

10.22

Isoelectric Point (pI)

71.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17710 FvH4_6g45590 FvH4_6g45591 FvH4_6g45770 FvH4_6g45770 FvH4_6g46030 FvH4_6g46040 FvH4_7g07020 FvH4_7g07071 FvH4_7g07080
malus_domestica MD01G1104300.v1.1 MD02G1240000.v1.1 MD02G1240200.v1.1 MD03G1201400.v1.1 MD03G1201500.v1.1 MD07G1171100.v1.1
prunus_persica Prupe.2G087400_v2.0.a1 Prupe.2G097500_v2.0.a1 Prupe.2G097700_v2.0.a1 Prupe.2G097800_v2.0.a1 Prupe.3G153100_v2.0.a1 Prupe.3G153300_v2.0.a1 Prupe.3G153600_v2.0.a1 Prupe.5G237200_v2.0.a1
pyrus_communis pycom03g15270 pycom06g20700 pycom07g06030 pycom10g01810 pycom10g01820 pycom10g12090 pycom14g20090 pycom14g20100 pycom14g20110 pycom14g20120
rosa_chinensis RchiOBHm_Chr1g0336971 RchiOBHm_Chr1g0337031 RchiOBHm_Chr2g0163571 RchiOBHm_Chr2g0163591 RchiOBHm_Chr2g0163631 RchiOBHm_Chr2g0163661 RchiOBHm_Chr2g0163671 RchiOBHm_Chr2g0163691 RchiOBHm_Chr2g0163741 RchiOBHm_Chr5g0011821 RchiOBHm_Chr5g0011831 RchiOBHm_Chr5g0011841 RchiOBHm_Chr5g0053101 RchiOBHm_Chr5g0072501
rosa_laevigata RLG00000010009 RLG00000021413 RLG00000029310 RLG00000029318 RLG00000036313
rosa_multiflora Rmu_co7975848.1_g000001 Rmu_co8020886.1_g000001 Rmu_co8136580.1_g000001 Rmu_co8177372.1_g000001 Rmu_co8207014.1_g000001 Rmu_co8232187.1_g000001 Rmu_co8277595.1_g000001 Rmu_co8389219.1_g000001 Rmu_co8427877.1_g000001 Rmu_co8467587.1_g000001 Rmu_sc0001475.1_g000015 Rmu_sc0001475.1_g000016 Rmu_sc0001475.1_g000017 Rmu_sc0003462.1_g000002 Rmu_sc0003462.1_g000003 Rmu_sc0003484.1_g000002 Rmu_sc0004918.1_g000004 Rmu_sc0004918.1_g000006 Rmu_sc0004918.1_g000007 Rmu_sc0004918.1_g000009 Rmu_sc0006596.1_g000003 Rmu_sc0006596.1_g000005 Rmu_sc0006596.1_g000010 Rmu_sc0008676.1_g000021 Rmu_sc0014330.1_g000002 Rmu_sc0016133.1_g000002 Rmu_sc0016133.1_g000003 Rmu_sc0016133.1_g000004 Rmu_sc0026453.1_g000003 Rmu_sc0026453.1_g000004 Rmu_sc0030660.1_g000001
rosa_roxburghii Rroxscaffold_1G00008700 Rroxscaffold_1G00064740 Rroxscaffold_2G00086950 Rroxscaffold_2G00087100 Rroxscaffold_2G00087140 Rroxscaffold_4G00302080 Rroxscaffold_4G00315020 Rroxscaffold_4G00315170 Rroxscaffold_5G00358800
rosa_rugosa Rorug01G0129200 Rorug01G0130600 Rorug01G0130700 Rorug02G0503700 Rorug02G0503800 Rorug02G0503900 Rorug02G0504000 Rorug02G0504300 Rorug05G0268200 Rorug05G0418700 Rorug05G0418800
rosa_samantha Rh1AG151100 Rh1AG151300 Rh1BG118400 Rh1BG120600 Rh1CG141500 Rh1CG142500 Rh1DG157300 Rh1DG158500 Rh2AG570600 Rh2AG570800 Rh2AG571200 Rh2AG571300 Rh2AG571500 Rh2AG571900 Rh2AG572000 Rh2AG572200 Rh2CG552600 Rh2CG552800 Rh2CG553000 Rh2CG553300 Rh2CG553400 Rh2CG553700 Rh5CG100400 Rh5CG100500 Rh5CG100600 Rh5CG100700 Rh5CG519100 Rh5DG086600 Rh5DG086700 Rh5DG086800 Rh5DG086900 Rh5DG087000 Rh5DG087100 Rh5DG367600 Rh5DG507300
rosa_wichuraiana Rw1G012130 Rw1G012240 Rw1G012380 Rw2G047240 Rw2G047260 Rw2G047270 Rw2G047290 Rw5G007940 Rw5G044120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 2 cut(s) 35, 110
AccI GTMKAC 1 cut(s) 207
AciI CCGC 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 2 cut(s) 38, 187
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 2 cut(s) 35, 110
BanII GRGCYC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 2 cut(s) 39, 80
BlsI GCNGC 2 cut(s) 40, 81
BmiI GGNNCC 2 cut(s) 37, 112
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 3 cut(s) 32, 152, 189
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 91
BshNI GGYRCC 2 cut(s) 35, 110
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 3 cut(s) 31, 151, 188
BspLI GGNNCC 2 cut(s) 37, 112
BspT107I GGYRCC 2 cut(s) 35, 110
BsrI ACTGG 1 cut(s) 224
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 36
BstDEI CTNAG 4 cut(s) 18, 138, 175, 239
BstF5I GGATG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 187
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 231
CfoI GCGC 2 cut(s) 38, 187
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 111
CviJI RGCY 2 cut(s) 151, 203
CviKI_1 RGCY 2 cut(s) 151, 203
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 4 cut(s) 18, 138, 175, 239
DinI GGCGCC 1 cut(s) 37
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaiI YATR 2 cut(s) 53, 155
FaqI GGGAC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 39, 80
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 39, 80
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 2 cut(s) 37, 186
GluI GCNGC 2 cut(s) 39, 80
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 38, 187
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 2 cut(s) 36, 185
HinP1I GCGC 2 cut(s) 36, 185
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 3 cut(s) 63, 122, 233
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 47, 141, 178
Hpy188III TCNNGA 3 cut(s) 20, 193, 249
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 156
HpyF3I CTNAG 4 cut(s) 18, 138, 175, 239
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 2 cut(s) 36, 185
KasI GGCGCC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 5, 73, 93, 132, 178, 224, 234, 237
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 99
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 153
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 1 cut(s) 60
NarI GGCGCC 1 cut(s) 36
NdeII GATC 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 37, 112
NsbI TGCGCA 1 cut(s) 186
PfeI GAWTC 2 cut(s) 63, 122
PkrI GCNGC 2 cut(s) 40, 81
PleI GAGTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 37, 112
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 250
SalI GTCGAC 1 cut(s) 206
SatI GCNGC 2 cut(s) 39, 80
Sau3AI GATC 1 cut(s) 134
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 153
SetI ASST 2 cut(s) 121, 192
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 250
SsiI CCGC 1 cut(s) 39
SspDI GGCGCC 1 cut(s) 35
TaqI TCGA 2 cut(s) 207, 220
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 63, 122
TscAI CASTG 1 cut(s) 231
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 231
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.