AT3G54070

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000157
Physical Location & Seq
Reverse (-)
20022642 .. 20023603
962 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54070.1

Sequence Viewer

Length: 769 bp
ATGGGAATCTTGGATAAAGGCAAACAGCTTCACCAAGAAGACGTAATAGTGGAAGTAGGAGAGCCAAGTGGGTCATCTCCAAATGAAGATCCTAGTTCACTGCCCAATGTTGAGGATCATACTTCAGAAGATGTTACAAAACCACATAGCCGGAATTTAATGTATAAAGCTGTTCTGACAGGAGATTGGAAAACAGCCAGCACTTTAATATCGAGAAAAGAGTGTAATGTCGTGGAGCAAATTACTGGTAATTCTGAGATTGCTCTTCACATAGCTGTTGCAGCAAAGCACAAGGATTTTGTGAGAAATCTACTCAGAGAAATGGATCCCCCTGACTTGTCACTGAAAAACAAAGACGGCAACACACCCTTGTCTTTTGCTGCCGCGTTGGGAGACATTGAGACTGCTGAGATGTTAATAAACATGATCCGAGATCTTCCGGATATTTCGAACGAGAAAACAATGACACCAATCCACATCGCCGCTTTGTACGGCCATGGAGAAATGGTTCAATATCTTTTCTCCAAAACAAGCATCAAAGATCTCAATGATCAGCAATATCTGAATCTCTTTCATACCATGATATCAGCTGATATTTATGGTGTATTTGCAGATGTACCTCTGTGGATGTTGGAAAGAGTGGATTTGTATAGAAAAGAACTAGCCCTTTATCCAAATAGTAACAAAGCCTTGCACTTGTTGGCTCGCAAGACTTCTGCCATTTCCCATAAAAGCCAGCTTAACTTGTTTCAGCAAGTAGCAAGTTCTT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

256

Amino Acids

28.57

Weight (kDa)

5.55

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 57 - 141 9.3e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 89 - 178 1.1e-14 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 2 cut(s) 384, 483
AclWI GGATC 5 cut(s) 83, 123, 320, 333, 421
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 2 cut(s) 491, 618
AgsI TTSAA 1 cut(s) 512
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 5 cut(s) 28, 170, 275, 590, 739
AluI AGCT 5 cut(s) 28, 170, 275, 590, 739
Alw26I GTCTC 2 cut(s) 387, 395
AlwI GGATC 5 cut(s) 83, 123, 320, 333, 421
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 2 cut(s) 281, 380
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 449
BamHI GGATCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 293, 367
BceAI ACGGC 2 cut(s) 373, 508
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 387, 395
BfaI CTAG 2 cut(s) 93, 662
BglII AGATCT 2 cut(s) 433, 541
BisI GCNGC 4 cut(s) 282, 381, 384, 483
BlsI GCNGC 4 cut(s) 283, 382, 385, 484
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 496
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bse1I ACTGG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 1 cut(s) 633
BseMII CTCAG 3 cut(s) 246, 328, 399
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 293, 367
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 495
BsiSI CCGG 2 cut(s) 151, 440
BsmAI GTCTC 2 cut(s) 387, 395
BsnI GGCC 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 449
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 2 cut(s) 384, 483
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 3 cut(s) 247, 327, 400
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 5 cut(s) 83, 123, 320, 333, 421
BspQI GCTCTTC 1 cut(s) 270
BspT104I TTCGAA 1 cut(s) 449
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
BssT1I CCWWGG 1 cut(s) 496
Bst6I CTCTTC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 199, 706, 737
BstDEI CTNAG 3 cut(s) 255, 314, 408
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 633
BstFNI CGCG 1 cut(s) 386
BstKTI GATC 7 cut(s) 91, 118, 328, 429, 436, 544, 553
BstMAI GTCTC 2 cut(s) 387, 395
BstMBI GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 293, 367
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 4 cut(s) 88, 325, 433, 541
BstYI RGATCY 4 cut(s) 88, 325, 433, 541
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 496
BtgZI GCGATG 1 cut(s) 463
BtsCI GGATG 1 cut(s) 633
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 98, 341
Cac8I GCNNGC 3 cut(s) 199, 706, 737
Csp6I GTAC 2 cut(s) 490, 617
CviAII CATG 3 cut(s) 424, 497, 580
CviQI GTAC 2 cut(s) 490, 617
DdeI CTNAG 3 cut(s) 255, 314, 408
DpnI GATC 7 cut(s) 90, 117, 327, 428, 435, 543, 552
DpnII GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 496
Eco32I GATATC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 108
EcoRV GATATC 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 3 cut(s) 427, 500, 583
FatI CATG 3 cut(s) 423, 496, 579
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 4 cut(s) 282, 381, 384, 483
FokI GGATG 1 cut(s) 640
Fsp4HI GCNGC 4 cut(s) 282, 381, 384, 483
FspBI CTAG 2 cut(s) 93, 662
GluI GCNGC 4 cut(s) 282, 381, 384, 483
HaeIII GGCC 1 cut(s) 495
HapII CCGG 2 cut(s) 151, 440
Hin1II CATG 3 cut(s) 427, 500, 583
HinfI GANTC 2 cut(s) 6, 565
HpaII CCGG 2 cut(s) 151, 440
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 6 cut(s) 127, 177, 256, 317, 431, 564
Hpy188III TCNNGA 2 cut(s) 213, 440
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 281, 611, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 255, 314, 408
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 3 cut(s) 427, 500, 583
Kpn2I TCCGGA 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 7 cut(s) 164, 165, 211, 231, 345, 453, 749
Lsp1109I GCAGC 2 cut(s) 293, 367
LweI GCATC 1 cut(s) 543
MaeI CTAG 2 cut(s) 93, 662
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 133, 339, 680
MalI GATC 7 cut(s) 90, 117, 327, 428, 435, 543, 552
MboI GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
MboII GAAGA 5 cut(s) 50, 98, 140, 257, 428
MflI RGATCY 4 cut(s) 88, 325, 433, 541
MluCI AATT 3 cut(s) 154, 240, 250
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 2 cut(s) 106, 630
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 4 cut(s) 158, 206, 416, 741
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 2 cut(s) 151, 440
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 496
NdeII GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
NlaIII CATG 3 cut(s) 427, 500, 583
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 339
NspV TTCGAA 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 6, 565
PkrI GCNGC 4 cut(s) 283, 382, 385, 484
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 4 cut(s) 88, 325, 433, 541
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 2 cut(s) 491, 618
RsaNI GTAC 2 cut(s) 490, 617
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 158, 206, 416, 741
SatI GCNGC 4 cut(s) 282, 381, 384, 483
Sau3AI GATC 7 cut(s) 88, 115, 325, 426, 433, 541, 550
SetI ASST 7 cut(s) 30, 45, 172, 277, 592, 622, 741
SfaNI GCATC 1 cut(s) 543
SfuI TTCGAA 1 cut(s) 449
Sse9I AATT 3 cut(s) 154, 240, 250
SsiI CCGC 2 cut(s) 384, 483
SspMI CTAG 2 cut(s) 93, 662
StyI CCWWGG 1 cut(s) 496
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 212, 449
TasI AATT 3 cut(s) 154, 240, 250
TauI GCSGC 2 cut(s) 386, 485
TfiI GAWTC 2 cut(s) 6, 565
Tru1I TTAA 4 cut(s) 158, 206, 416, 741
Tru9I TTAA 4 cut(s) 158, 206, 416, 741
TscAI CASTG 2 cut(s) 105, 348
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 2 cut(s) 281, 380
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 2 cut(s) 99, 563
TspRI CASTG 2 cut(s) 105, 348
XapI RAATTY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 2 cut(s) 93, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.