Rorug05G0226800

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000157
Physical Location & Seq
Reverse (-)
23505811 .. 23508288
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0226800.1

Sequence Viewer

Length: 462 bp
ATGTCGTCGACGACCACCACCAACAAAGCGGGACCGGCGTCGGCCCAGCAGAGCAATGCGAAGCCGGGGCTCCGAAAGCCCGTGTTCGTCAAGGTCAGCGATCTCAGGCCCGGGACGAGCGGCCACACTCTCGTCGTCAAGGTCATCAGCTCCACCACCGTGTTGCACAAGGGCCGATCGGTGTCTCAGCACCTCCGCCAGACCCGAATCTCCGAGTGCCTCATTGGGGATGAGACCGGGACCATTCTCTTCACCGCCAGAAATGATCAAGTTGAATTGATGAAACCTGATACCACTGTTATTCTCCGGAATGCTAAGATCGACATGTTTAAGGGATCCATGAGGCTAGCAGTTGACAAATGGGGCCGTATTGAGGTGACCGAGCCTGCAAACTTTGTAGTCAAGGAGAACAACAATCTCTCTTTAGTTGAATATGAGCTGGTGAGTGTTGTGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

153

Amino Acids

16.79

Weight (kDa)

9.37

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_Ssb-like PF21473 35 - 126 3.4e-45 Single-stranded DNA binding protein Ssb-like, OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 8
AccIII TCCGGA 1 cut(s) 306
AciI CCGC 4 cut(s) 29, 120, 196, 255
AclWI GGATC 2 cut(s) 330, 343
AcoI YGGCCR 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 226, 373
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 275, 431
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 2 cut(s) 150, 439
AluI AGCT 2 cut(s) 150, 439
Alw26I GTCTC 2 cut(s) 189, 227
AlwI GGATC 2 cut(s) 330, 343
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 306
AoxI GGCC 5 cut(s) 42, 107, 121, 172, 364
AspS9I GGNCC 6 cut(s) 32, 43, 108, 172, 240, 364
AsuC2I CCSGG 4 cut(s) 66, 111, 112, 238
AsuHPI GGTGA 3 cut(s) 244, 388, 454
AsuNHI GCTAGC 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 32, 240
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 351
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 4 cut(s) 66, 111, 112, 238
BcoDI GTCTC 2 cut(s) 189, 227
BfaI CTAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 4 cut(s) 66, 111, 112, 238
Bme18I GGWCC 2 cut(s) 32, 240
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 6 cut(s) 32, 43, 108, 172, 240, 364
BmiI GGNNCC 5 cut(s) 33, 71, 241, 337, 365
BmrFI CCNGG 4 cut(s) 66, 111, 112, 238
BmtI GCTAGC 1 cut(s) 350
BoxI GACNNNNGTC 1 cut(s) 37
BpuMI CCSGG 4 cut(s) 66, 111, 112, 238
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 65, 110
BsaWI WCCGGW 1 cut(s) 306
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 373
Bse118I RCCGGY 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 65, 110
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 226, 373
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 118, 200
BseYI CCCAGC 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 5 cut(s) 44, 109, 123, 174, 366
BsiEI CGRYCG 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 5 cut(s) 35, 65, 111, 237, 307
BslFI GGGAC 3 cut(s) 45, 127, 253
BslI CCNNNNNNNGG 2 cut(s) 226, 373
BsmAI GTCTC 2 cut(s) 189, 227
BsmFI GGGAC 3 cut(s) 45, 127, 253
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 5 cut(s) 44, 109, 123, 174, 366
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 306
Bsp143I GATC 5 cut(s) 100, 176, 265, 318, 335
BspACI CCGC 4 cut(s) 29, 120, 196, 255
BspANI GGCC 5 cut(s) 44, 109, 123, 174, 366
BspCNI CTCAG 2 cut(s) 117, 199
BspEI TCCGGA 1 cut(s) 306
BspLI GGNNCC 5 cut(s) 33, 71, 241, 337, 365
BspOI GCTAGC 1 cut(s) 350
BspPI GGATC 2 cut(s) 330, 343
BspTNI GGTCTC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 65, 110
BssMI GATC 5 cut(s) 100, 176, 265, 318, 335
BssNI GRCGYC 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 160, 298
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 348, 387
BstDEI CTNAG 3 cut(s) 104, 186, 315
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 5 cut(s) 103, 179, 268, 321, 338
BstMAI GTCTC 2 cut(s) 189, 227
BstMBI GATC 5 cut(s) 100, 176, 265, 318, 335
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 2 cut(s) 35, 76
BstNSI RCATGY 1 cut(s) 328
BstPAI GACNNNNGTC 1 cut(s) 37
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 4 cut(s) 64, 109, 110, 236
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 5 cut(s) 44, 109, 123, 174, 366
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 348, 387
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 6 cut(s) 32, 43, 108, 172, 240, 364
Cfr9I CCCGGG 1 cut(s) 110
CseI GACGC 1 cut(s) 27
CviAII CATG 2 cut(s) 325, 340
DdeI CTNAG 3 cut(s) 104, 186, 315
DpnI GATC 5 cut(s) 102, 178, 267, 320, 337
DpnII GATC 5 cut(s) 100, 176, 265, 318, 335
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 2 cut(s) 32, 240
Eco88I CYCGRG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 2 cut(s) 328, 343
FaiI YATR 3 cut(s) 326, 341, 435
FaqI GGGAC 3 cut(s) 45, 127, 253
FatI CATG 2 cut(s) 324, 339
FauI CCCGC 1 cut(s) 22
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 347
GluI GCNGC 1 cut(s) 121
GsaI CCCAGC 1 cut(s) 49
HaeIII GGCC 5 cut(s) 44, 109, 123, 174, 366
HapII CCGG 5 cut(s) 35, 65, 111, 237, 307
HgaI GACGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 328, 343
HincII GTYRAC 2 cut(s) 9, 355
HindII GTYRAC 2 cut(s) 9, 355
HinfI GANTC 1 cut(s) 207
HpaII CCGG 5 cut(s) 35, 65, 111, 237, 307
HphI GGTGA 3 cut(s) 244, 388, 454
Hpy166II GTNNAC 2 cut(s) 9, 355
Hpy188I TCNGA 2 cut(s) 74, 214
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 2 cut(s) 9, 355
Hpy99I CGWCG 4 cut(s) 10, 13, 43, 137
HpyCH4III ACNGT 2 cut(s) 160, 298
HpyCH4V TGCA 2 cut(s) 166, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 76
HpyF3I CTNAG 3 cut(s) 104, 186, 315
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 328, 343
Kpn2I TCCGGA 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 5 cut(s) 100, 176, 265, 318, 335
LmnI GCTCC 2 cut(s) 75, 155
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 376
MalI GATC 5 cut(s) 102, 178, 267, 320, 337
MbiI CCGCTC 1 cut(s) 120
MboI GATC 5 cut(s) 100, 176, 265, 318, 335
MboII GAAGA 1 cut(s) 241
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 275
MnlI CCTC 4 cut(s) 203, 230, 336, 367
MroI TCCGGA 1 cut(s) 306
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 5 cut(s) 35, 65, 111, 237, 307
MspR9I CCNGG 4 cut(s) 66, 111, 112, 238
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 35, 76
NciI CCSGG 4 cut(s) 66, 111, 112, 238
NdeII GATC 5 cut(s) 100, 176, 265, 318, 335
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 2 cut(s) 328, 343
NlaIV GGNNCC 5 cut(s) 33, 71, 241, 337, 365
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 1 cut(s) 328
OliI CACNNNNGTG 1 cut(s) 158
PciI ACATGT 1 cut(s) 324
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 122
Ple19I CGATCG 1 cut(s) 179
PscI ACATGT 1 cut(s) 324
PshAI GACNNNNGTC 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 45
PspN4I GGNNCC 5 cut(s) 33, 71, 241, 337, 365
PspPI GGNCC 6 cut(s) 32, 43, 108, 172, 240, 364
PsuI RGATCY 1 cut(s) 335
PvuI CGATCG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 158
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 5 cut(s) 100, 176, 265, 318, 335
Sau96I GGNCC 6 cut(s) 32, 43, 108, 172, 240, 364
ScrFI CCNGG 4 cut(s) 66, 111, 112, 238
SduI GDGCHC 1 cut(s) 72
SetI ASST 7 cut(s) 96, 144, 152, 195, 289, 378, 441
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 2 cut(s) 32, 240
SmaI CCCGGG 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 1 cut(s) 275
SsiI CCGC 4 cut(s) 29, 120, 196, 255
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 4 cut(s) 64, 109, 110, 236
TaaI ACNGT 2 cut(s) 160, 298
TaqI TCGA 2 cut(s) 8, 321
TaqII GACCGA 1 cut(s) 395
TasI AATT 1 cut(s) 275
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 296
TspMI CCCGGG 1 cut(s) 110
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 32, 240
XceI RCATGY 1 cut(s) 328
XmaI CCCGGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.