RchiOBHm_Chr1g0316411

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000157
Physical Location & Seq
Forward (+)
3780588 .. 3783022
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54684

Sequence Viewer

Length: 1008 bp
ATGCAGAGCATGTGTGGCTGTCCAGCCCATGCATTAGTCAAGGCTCTTTGGCGCAGCGTAACAACAAACGAGGAATTCGCAGAACTAGTAAAAACTCCTACGCACCTATTGTTTGACGCATTAAAATCAGGAAATTCAGAATTTGTAACGACGCTTGTTCATTACTATCCTGCTTTGTTATGGGAAAAGGATAGCGAAAATCATACCATAATACATGCCGCAGTTTCACTTCGCCAAGCGAATGTCTGCAAGTTAATACACGAGATAGGCCTGATCAAGAACGTCATCCTTGCCCTCAAAGATGACCGAAAAAATACTATGCTCCATTTAGCTGCAAGATTAGCTCCCAAAAGCCAATTAAATAAATGGTCTGGAGCAGCTTTGCGAATGCAGCACGAATTAAAATGGTTCGAGGACGTGAAAAGGATTTTGCCGCCTTCATACATAGACATGAAAAACTCAGACGACCAAACAGCTCAAGAAGTATTCTCTTCTGCACATGCAGAGTTATTAAAAGAGGCAGAAAAATGGATGAATGACGCAGCAAAATCATGTATGGTCGTGTCAAGTCTTCTTGTCAGTGCTTTGTTTACGACGGGAATTACTGTGGCGCTGGGAGGGAATAACAGTAGTGATCATCATTTGAAAAGGGTCTCGTATCAATTTTTCATCATATCAGATGCGGTTGCACTCTTCATGGGCTTGATTGCAACATTAATGTTCTTTTACATTCTCACCTCACGTTACGCGGAAAAAGATTTTCTAGAAGACCTACCCTCAAAGTTGCTCAAGGGACTCATATTTCTCTTCATTTCCATCATAGCCCTGATGACGACATTCAGCACGGTGTTCTTCATTGCTTATGGTGTCAAGAACGCACTCCCTTATCTTGTACTCCTCTCTGCAGGCGTGGCATTGGTCGTCTTTTTTAAGCTGCTGCTTCCATTTGGTCAGGAGATACGTGCTTCCACCACTTCCAAGTCTTTATTTGAACCAAGCCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

335

Amino Acids

37.48

Weight (kDa)

8.24

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 175 - 285 8.6e-14 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 749
AciI CCGC 4 cut(s) 219, 434, 683, 749
AcsI RAATTY 3 cut(s) 74, 133, 140
AfaI GTAC 1 cut(s) 894
AgsI TTSAA 2 cut(s) 646, 992
AhlI ACTAGT 1 cut(s) 85
AjiI CACGTC 1 cut(s) 418
AluBI AGCT 5 cut(s) 332, 344, 380, 476, 934
AluI AGCT 5 cut(s) 332, 344, 380, 476, 934
Alw26I GTCTC 1 cut(s) 658
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 7 cut(s) 54, 332, 377, 391, 542, 934, 937
ApoI RAATTY 3 cut(s) 74, 133, 140
AseI ATTAAT 1 cut(s) 716
AspLEI GCGC 2 cut(s) 54, 613
AsuHPI GGTGA 1 cut(s) 727
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 563, 774
BbvI GCAGC 7 cut(s) 66, 319, 389, 403, 554, 921, 924
BccI CCATC 1 cut(s) 824
BclI TGATCA 2 cut(s) 273, 634
BcoDI GTCTC 1 cut(s) 658
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 2 cut(s) 86, 764
BfmI CTRYAG 1 cut(s) 903
BfoI RGCGCY 1 cut(s) 614
BisI GCNGC 9 cut(s) 55, 219, 333, 378, 392, 434, 543, 935, 938
BlsI GCNGC 9 cut(s) 56, 220, 334, 379, 393, 435, 544, 936, 939
BmgBI CACGTC 1 cut(s) 418
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 2 cut(s) 563, 774
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 462, 773
BsaAI YACGTR 1 cut(s) 962
BsaI GGTCTC 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 855
BseGI GGATG 2 cut(s) 285, 537
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 887
BseXI GCAGC 7 cut(s) 66, 319, 389, 403, 554, 921, 924
BseYI CCCAGC 1 cut(s) 613
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 1 cut(s) 270
BslFI GGGAC 1 cut(s) 807
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 807
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 658
Bsp143I GATC 2 cut(s) 273, 634
BspACI CCGC 4 cut(s) 219, 434, 683, 749
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 473
BspFNI CGCG 1 cut(s) 749
BspMAI CTGCAG 1 cut(s) 907
BspTNI GGTCTC 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 855
BssMI GATC 2 cut(s) 273, 634
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 607, 629, 847
Bst6I CTCTTC 3 cut(s) 496, 698, 812
BstBAI YACGTR 1 cut(s) 962
BstC8I GCNNGC 1 cut(s) 907
BstDEI CTNAG 1 cut(s) 460
BstF5I GGATG 2 cut(s) 285, 537
BstFNI CGCG 1 cut(s) 749
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 2 cut(s) 54, 613
BstKTI GATC 2 cut(s) 276, 637
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 2 cut(s) 273, 634
BstMWI GCNNNNNNNGC 4 cut(s) 15, 341, 391, 911
BstNSI RCATGY 3 cut(s) 13, 218, 503
BstSFI CTRYAG 1 cut(s) 903
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 7 cut(s) 66, 319, 389, 403, 554, 921, 924
BstV2I GAAGAC 2 cut(s) 563, 774
BsuRI GGCC 1 cut(s) 270
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 285, 537
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 907
CfoI GCGC 2 cut(s) 54, 613
CseI GACGC 3 cut(s) 125, 160, 548
Csp6I GTAC 1 cut(s) 893
CviAII CATG 7 cut(s) 10, 29, 215, 451, 500, 552, 697
CviQI GTAC 1 cut(s) 893
DdeI CTNAG 1 cut(s) 460
DpnI GATC 2 cut(s) 275, 636
DpnII GATC 2 cut(s) 273, 634
Eam1104I CTCTTC 3 cut(s) 496, 698, 812
EarI CTCTTC 3 cut(s) 496, 698, 812
Eco147I AGGCCT 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 658
EcoRI GAATTC 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 34
FaeI CATG 7 cut(s) 13, 32, 218, 454, 503, 555, 700
FaqI GGGAC 1 cut(s) 807
FatI CATG 7 cut(s) 9, 28, 214, 450, 499, 551, 696
FbaI TGATCA 2 cut(s) 273, 634
Fnu4HI GCNGC 9 cut(s) 55, 219, 333, 378, 392, 434, 543, 935, 938
FokI GGATG 2 cut(s) 272, 544
Fsp4HI GCNGC 9 cut(s) 55, 219, 333, 378, 392, 434, 543, 935, 938
FspBI CTAG 2 cut(s) 86, 764
GlaI GCGC 2 cut(s) 53, 612
GluI GCNGC 9 cut(s) 55, 219, 333, 378, 392, 434, 543, 935, 938
GsaI CCCAGC 1 cut(s) 617
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 1 cut(s) 270
HgaI GACGC 3 cut(s) 125, 160, 548
HhaI GCGC 2 cut(s) 54, 613
Hin1II CATG 7 cut(s) 13, 32, 218, 454, 503, 555, 700
Hin6I GCGC 2 cut(s) 52, 611
HinP1I GCGC 2 cut(s) 52, 611
HinfI GANTC 1 cut(s) 795
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 1 cut(s) 591
Hpy188I TCNGA 3 cut(s) 139, 463, 679
Hpy188III TCNNGA 7 cut(s) 129, 277, 372, 479, 764, 871, 953
Hpy8I GTNNAC 1 cut(s) 591
Hpy99I CGWCG 2 cut(s) 154, 598
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 3 cut(s) 607, 629, 847
HpyCH4IV ACGT 4 cut(s) 282, 417, 742, 961
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 341, 391, 911
HpyF3I CTNAG 1 cut(s) 460
HpySE526I ACGT 4 cut(s) 282, 417, 742, 961
Hsp92II CATG 7 cut(s) 13, 32, 218, 454, 503, 555, 700
HspAI GCGC 2 cut(s) 52, 611
Ksp22I TGATCA 2 cut(s) 273, 634
Kzo9I GATC 2 cut(s) 273, 634
LmnI GCTCC 3 cut(s) 327, 349, 374
LpnPI CCDG 9 cut(s) 36, 114, 183, 284, 357, 599, 839, 891, 938
Lsp1109I GCAGC 7 cut(s) 66, 319, 389, 403, 554, 921, 924
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 86, 764
MaeII ACGT 4 cut(s) 282, 417, 742, 961
MaeIII GTNAC 3 cut(s) 58, 145, 743
MalI GATC 2 cut(s) 275, 636
MboI GATC 2 cut(s) 273, 634
MboII GAAGA 6 cut(s) 483, 563, 685, 779, 799, 844
MluCI AATT 8 cut(s) 74, 133, 140, 356, 398, 600, 662, 1003
MlyI GAGTC 1 cut(s) 789
MnlI CCTC 8 cut(s) 64, 305, 406, 511, 611, 748, 787, 908
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 8 cut(s) 122, 254, 359, 401, 512, 716, 930, 1006
MslI CAYNNNNRTG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 393
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 4 cut(s) 15, 341, 391, 911
NdeII GATC 2 cut(s) 273, 634
NlaIII CATG 7 cut(s) 13, 32, 218, 454, 503, 555, 700
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 3 cut(s) 13, 218, 503
PceI AGGCCT 1 cut(s) 270
PctI GAATGC 1 cut(s) 393
PkrI GCNGC 9 cut(s) 56, 220, 334, 379, 393, 435, 544, 936, 939
PleI GAGTC 1 cut(s) 789
PpsI GAGTC 1 cut(s) 789
Ppu21I YACGTR 1 cut(s) 962
PshBI ATTAAT 1 cut(s) 716
PspFI CCCAGC 1 cut(s) 613
PstI CTGCAG 1 cut(s) 907
RsaI GTAC 1 cut(s) 894
RsaNI GTAC 1 cut(s) 893
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 8 cut(s) 122, 254, 359, 401, 512, 716, 930, 1006
SatI GCNGC 9 cut(s) 55, 219, 333, 378, 392, 434, 543, 935, 938
Sau3AI GATC 2 cut(s) 273, 634
SchI GAGTC 1 cut(s) 789
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 477, 788
SmoI CTYRAG 2 cut(s) 477, 788
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 8 cut(s) 74, 133, 140, 356, 398, 600, 662, 1003
SseBI AGGCCT 1 cut(s) 270
SsiI CCGC 4 cut(s) 219, 434, 683, 749
SspMI CTAG 2 cut(s) 86, 764
StuI AGGCCT 1 cut(s) 270
TaaI ACNGT 3 cut(s) 607, 629, 847
TaiI ACGT 4 cut(s) 285, 420, 745, 964
TaqI TCGA 1 cut(s) 411
TaqII GACCGA 1 cut(s) 321
TasI AATT 8 cut(s) 74, 133, 140, 356, 398, 600, 662, 1003
TatI WGTACW 1 cut(s) 892
TauI GCSGC 2 cut(s) 221, 436
Tru1I TTAA 8 cut(s) 122, 254, 359, 401, 512, 716, 930, 1006
Tru9I TTAA 8 cut(s) 122, 254, 359, 401, 512, 716, 930, 1006
TscAI CASTG 1 cut(s) 586
TseI GCWGC 7 cut(s) 54, 332, 377, 391, 542, 934, 937
TspDTI ATGAA 8 cut(s) 149, 429, 467, 548, 658, 685, 799, 844
TspRI CASTG 1 cut(s) 586
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 3 cut(s) 74, 133, 140
XbaI TCTAGA 1 cut(s) 763
XceI RCATGY 3 cut(s) 13, 218, 503
XspI CTAG 2 cut(s) 86, 764
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.