Rmu_sc0001556.1_g000023

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001556.1
OG0000157
Physical Location & Seq
Forward (+)
100485 .. 100814
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001556.1_g000023.1.cds

Sequence Viewer

Length: 330 bp
atgtcagaggatttccaggaggaacctgcacatgaagtagaagggccatttgaaagcaggctgcagacatctcatccattaccagaaggcctgggagcacaagtgatagctctcttcacaagtacttttcgcgaaccaaagaagatagataataaaattccaccaaaagtacaagcaacaacacctgctaaatgggctcagagtgctccaactcaagaacgtacaaatatatctggcgatgtactaagaaaagatcagaaggatgttacacatactccaggtattaagtttgagcatattattccagttttgtttctggtaccttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

109

Amino Acids

12.15

Weight (kDa)

5.76

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 2 cut(s) 34, 193
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccII CGCG 1 cut(s) 132
AcsI RAATTY 1 cut(s) 156
AfaI GTAC 5 cut(s) 124, 171, 223, 243, 321
AgsI TTSAA 1 cut(s) 53
AjnI CCWGG 3 cut(s) 15, 90, 277
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 2 cut(s) 100, 208
AoxI GGCC 2 cut(s) 44, 88
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 2 cut(s) 100, 208
BbvI GCAGC 1 cut(s) 48
BciT130I CCWGG 3 cut(s) 17, 92, 279
BfmI CTRYAG 1 cut(s) 62
BfuAI ACCTGC 2 cut(s) 34, 193
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 3 cut(s) 17, 92, 279
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 24, 321
BmrFI CCNGG 3 cut(s) 17, 92, 279
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 259, 289
Bse1I ACTGG 1 cut(s) 305
BseBI CCWGG 3 cut(s) 17, 92, 279
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 73, 268
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 48
BsgI GTGCAG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 46, 90
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 100, 208
BsnI GGCC 2 cut(s) 46, 90
Bsp1286I GDGCHC 3 cut(s) 100, 199, 208
Bsp143I GATC 1 cut(s) 253
Bsp68I TCGCGA 1 cut(s) 132
BspANI GGCC 2 cut(s) 46, 90
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 24, 321
BspMAI CTGCAG 1 cut(s) 66
BspMI ACCTGC 2 cut(s) 34, 193
BspT107I GGYRCC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 253
Bst2UI CCWGG 3 cut(s) 17, 92, 279
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 198, 245
BstF5I GGATG 2 cut(s) 73, 268
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 3 cut(s) 17, 92, 279
BstSCI CCNGG 3 cut(s) 15, 90, 277
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 46, 90
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 73, 268
BtuMI TCGCGA 1 cut(s) 132
BveI ACCTGC 2 cut(s) 34, 193
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 5 cut(s) 123, 170, 222, 242, 320
CviAII CATG 1 cut(s) 32
CviJI RGCY 5 cut(s) 46, 61, 90, 110, 197
CviKI_1 RGCY 5 cut(s) 46, 61, 90, 110, 197
CviQI GTAC 5 cut(s) 123, 170, 222, 242, 320
DdeI CTNAG 2 cut(s) 198, 245
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 15, 90, 277
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 1 cut(s) 35
FaiI YATR 4 cut(s) 33, 230, 273, 297
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 2 cut(s) 60, 275
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 2 cut(s) 46, 90
Hin1II CATG 1 cut(s) 35
Hpy188I TCNGA 3 cut(s) 7, 201, 258
Hpy188III TCNNGA 3 cut(s) 131, 215, 327
HpyAV CCTTC 3 cut(s) 35, 80, 253
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 29, 64
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 2 cut(s) 198, 245
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 1 cut(s) 35
KpnI GGTACC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 2 cut(s) 95, 211
Lsp1109I GCAGC 1 cut(s) 48
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 106, 154
MhlI GDGCHC 3 cut(s) 100, 199, 208
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 17, 92, 279
MvaI CCWGG 3 cut(s) 17, 92, 279
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NdeII GATC 1 cut(s) 253
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 2 cut(s) 24, 321
NruI TCGCGA 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 193
PceI AGGCCT 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 15, 90, 277
PspGI CCWGG 3 cut(s) 15, 90, 277
PspN4I GGNNCC 2 cut(s) 24, 321
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 66
RruI TCGCGA 1 cut(s) 132
RsaI GTAC 5 cut(s) 124, 171, 223, 243, 321
RsaNI GTAC 5 cut(s) 123, 170, 222, 242, 320
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 124
ScrFI CCNGG 3 cut(s) 17, 92, 279
SduI GDGCHC 3 cut(s) 100, 199, 208
SetI ASST 6 cut(s) 28, 112, 187, 223, 283, 325
SfcI CTRYAG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 90
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 15, 90, 277
TaiI ACGT 1 cut(s) 223
TasI AATT 1 cut(s) 156
TatI WGTACW 3 cut(s) 122, 169, 241
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 48
XapI RAATTY 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.