MD03G1146900.v1.1

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000157
Physical Location & Seq
Reverse (-)
16103251 .. 16103553
303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1146900.v1.1.491

Sequence Viewer

Length: 303 bp
ATGTTGAAACGTGACGACAACGACAAAGTCATGCGTCTGATAAGAGAGCCTTCTGAATTACTATTTGACGTAGCGAAAATAGGAACTTATGAATTCTTATCTGTGCTTATTGACTCTTATCCTGAATTGCTATTGGAATATGATGACAACAATCGAACTATCTTCCATATTGCAGTCTTGCATCGTCATGCAAGTATCTTCAATCTAGTGCATGAGACAGGCTCCATCAAAGATATCATAGCAACATTTACTGATGATGAGAATAACAACATTCTACATCTAGCTGAAAAATTGGCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

101

Amino Acids

11.58

Weight (kDa)

4.9

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 92
AgsI TTSAA 2 cut(s) 7, 202
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 92
BanI GGYRCC 1 cut(s) 295
BccI CCATC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 2 cut(s) 206, 281
BmiI GGNNCC 2 cut(s) 223, 297
BmsI GCATC 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BshNI GGYRCC 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 223, 297
BspT107I GGYRCC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 209
CseI GACGC 1 cut(s) 23
CviAII CATG 3 cut(s) 31, 188, 212
CviJI RGCY 3 cut(s) 49, 222, 284
CviKI_1 RGCY 3 cut(s) 49, 222, 284
Eco32I GATATC 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 235
FaeI CATG 3 cut(s) 34, 191, 215
FaiI YATR 7 cut(s) 32, 90, 141, 168, 189, 213, 239
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 3 cut(s) 30, 187, 211
FspBI CTAG 2 cut(s) 206, 281
FspEI CC 8 cut(s) 63, 66, 119, 135, 179, 204, 238, 278
HgaI GACGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 34, 191, 215
HinfI GANTC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 39, 55
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 60
HpyCH4IV ACGT 2 cut(s) 10, 69
HpyCH4V TGCA 4 cut(s) 173, 181, 191, 211
HpySE526I ACGT 2 cut(s) 10, 69
Hsp92II CATG 3 cut(s) 34, 191, 215
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 2 cut(s) 135, 204
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 206, 281
MaeII ACGT 2 cut(s) 10, 69
MaeIII GTNAC 1 cut(s) 11
MboII GAAGA 2 cut(s) 154, 190
MluCI AATT 4 cut(s) 56, 92, 125, 290
MlyI GAGTC 1 cut(s) 107
MseI TTAA 1 cut(s) 301
MslI CAYNNNNRTG 1 cut(s) 186
NlaIII CATG 3 cut(s) 34, 191, 215
NlaIV GGNNCC 2 cut(s) 223, 297
NmuCI GTSAC 1 cut(s) 11
PflFI GACNNNGTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 223, 297
PsyI GACNNNGTC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 301
SchI GAGTC 1 cut(s) 107
SetI ASST 4 cut(s) 13, 72, 286, 301
SfaNI GCATC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 4 cut(s) 56, 92, 125, 290
SspMI CTAG 2 cut(s) 206, 281
TaiI ACGT 2 cut(s) 13, 72
TaqI TCGA 1 cut(s) 154
TasI AATT 4 cut(s) 56, 92, 125, 290
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 105
Tth111I GACNNNGTC 1 cut(s) 26
XapI RAATTY 1 cut(s) 92
XspI CTAG 2 cut(s) 206, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.