RchiOBHm_Chr1g0316571

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000157
Physical Location & Seq
Reverse (-)
4013951 .. 4019441
5491 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54698

Sequence Viewer

Length: 2421 bp
ATGATTGAACCATTCGTTCATGTAACGTTTGCATATACAGAAGAAGGAAAGGATTCGACTTTATGTCTAAGGATGTATAGAGCTGCACTAAAAGGTGATTGGGAAGAGGCAGAAGAAACAATAAACAAAGATGAGTCAATAGTGCGTTGTGGGATCTCATTAGGATCATATACTGCCCTTCATGTTGCTGTGGGAGCGCGACAAGTCCAATTTGTGGAGAAGTTGGTGGAAAAGATGCAACCAAAGGACTTGAGACTTCAAGACGAAACGAGCAATACAGCTTTCTGTCTAGCTGCTGCCGCTGGATCTTTAGAAATTGCTAAAATTATGATACGGAAAGATCCAGACCTGCCAGGACTACTGGGTTCCAAAGGAAGAACGCCACTCTATTTTGCTGCTTTGTTTGGACATCAGAAAATGGCTGCATGTTTGTACTCTCTAGCGTCAAAAGAAGAAAACCTACAAGAACTATTTTTCACTTGCATTAAATCTGGTCTCTACGGTTTAGCCTCGTTGATGCTAAAAAAGAATCCCCAATTTGCCTGGCAACGTGATAAAGAGGGACAGACAGCCTTGCATTTGTTGGCTATAAAGCCTTCAGCATTTACCTCTAAAACTCCTCAAGGAATATGTATGAAGGTCAAATATTTGACATCAAAAATATGCATCAGACTCACACAATGTGAGTGCCGATCACTTCACTTATATATCACTTTTATCAAGTATCAATTTACGTTGGCGTTTGCAGGTCTTACCTCGAGAATACTAAAGATATGTGCAGAGCTTGCAAGTGAATTAGATAAGAATGATCATCAGTTAACCACAGTACTGGATTTATTAGCTCATGAAAAATCTTCGGTACCCACCAAGAAAAAAGAAAAAAATCCTTCCATATTACCCACCAAGAAAGGTAAAAATGCTTCGGTACCTGTCACTGACAGTTGGGGAATACGGAAAGGGCTTTCATCACCTTGTAGCCGATTACGGAAAAAGCTTGAAAGATCGTTTGCTTTGAAAGTGCTGGAAACGTATCCAGAGCTTCTTCTAGAACTGGATGGGGATAATTTAAGAGTTGCCTTGAGCAATTTATTGAATCAAGAGCATGCAACATCTGCCTCTGGACTACTGCGAGAAATACTCGAGCGAAGTGAGTTACTCTTCTTACTAGCTCAAACGCTATTGGCTTTACTGACAATTATTGATGCATGCGACCGTGCTTTAACCAACTTTATGCAGCTCTGTTCAAATTTTGCGTTCATCGTGGAAGGAGGATTAACTTTTATTCCACATGTAAATATAACTACAGATGAAAATTCAGCCCAAGCATTAGTCAAAGACCTCTGGGACGAAGTTATGAAACAAGACTACCCAAAATTCAAAGACATATTAACAAGGCCTACGCATCTATTGTTTGACGCGGCAGAATCAGGAAATTCTAAGTTTGTAGCGCAGCTGATTCACGATTCTCCTGATTTGATATGGGAAACTACTGATGATGACAGAAATTGGACCATAATACATGCAGCAGTTAAGAACCGCAATGAGAGGATCTTTAGTTTAATATACAAGATCGGGCTGATCAAGGATGTCATAGCTACCTTCAGAGACAAAGAAAATGGTAATACTATACTTCATTTGGTTGCAAAGTTAGCTCCAACTAGTCAGTTGAATAAATTACCTGGAGCAGCTTTCCAGATGCAGCGGGAATTATTATGGTTTGAGGAGGTGAAAAAGATAATGCGACCTTCACATATAGAGATGAAAAATAACAATTCAGCCGATGGCATAACACCTCAAGATTTATTCTCTGAGCAGCATGATGAATTATTGAAAGCTGGACAAGAATGGATGAATGGGACTGCACGATCATGCACACTTCTCTCGACGCTTATCGCAAGTGCTTTGTTTGCGGCCATAGTTACTGTTTCCGTCGCTGGAAATCATCCTTTACAAAAGACCTCATTTCGGATTTTCATCATTTCAGATGCGATAGCATGTTTGTTGGCCTTGATATCAACATTAACATTCATGGCTATCCTCACCTCACCGTATGCTGAAAGAGATTTTCTCATAGACTTACCCGGCAAGTTGAAAACCGGACTGGCATTTCTCTTGGTTTCTATCATAACCATGATGGTGGCGTTTAGCTCCTCTATTTTCATTGGTTACGGCCGTAAGGACTTCCTCTCAAGTCTTGTAACTGTTCTTGCACTTCTGACGGGGGTTGTGTCAATTGTTCAGCAGTGGCAGCTGTTGAGCATTGCATTTGGTTCTGCATCCTCTTCCGAGTCTTTATTTACGGAAAGTGAAACCGTGCTTCAGTCCAATAAGAAACTAACCGTACCCCAGATGAAAAAGAAAGAACCGTCCAGAGTACGTCAGTCAAAGAGAAAAACAAACCGTTCTTCAACAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

806

Amino Acids

89.92

Weight (kDa)

8.84

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 60 - 146 3e-10 Ankyrin repeats (3 copies)
PGG PF13962 615 - 721 1.7e-10 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 357, 737
Acc65I GGTACC 2 cut(s) 859, 925
AccB1I GGYRCC 2 cut(s) 859, 925
AccB7I CCANNNNNTGG 1 cut(s) 214
AccII CGCG 2 cut(s) 199, 1418
AciI CCGC 5 cut(s) 300, 1418, 1537, 1702, 1910
AclI AACGTT 1 cut(s) 26
AclWI GGATC 5 cut(s) 161, 172, 313, 335, 1556
AcoI YGGCCR 2 cut(s) 1911, 2170
AcsI RAATTY 4 cut(s) 1246, 1312, 1373, 1432
AcuI CTGAAG 3 cut(s) 582, 1585, 2303
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 6 cut(s) 434, 828, 861, 927, 2343, 2376
AfiI CCNNNNNNNGG 2 cut(s) 214, 1965
AflIII ACRYGT 1 cut(s) 1288
AhdI GACNNNNNGTC 1 cut(s) 63
AhlI ACTAGT 1 cut(s) 1658
AjnI CCWGG 3 cut(s) 352, 542, 1678
Alw26I GTCTC 3 cut(s) 247, 500, 1599
AlwI GGATC 5 cut(s) 161, 172, 313, 335, 1556
Ama87I CYCGRG 2 cut(s) 757, 1139
AoxI GGCC 4 cut(s) 1394, 1911, 2004, 2170
ApoI RAATTY 4 cut(s) 1246, 1312, 1373, 1432
Asp700I GAANNNNTTC 1 cut(s) 52
Asp718I GGTACC 2 cut(s) 859, 925
AspLEI GCGC 2 cut(s) 199, 1450
AspS9I GGNCC 1 cut(s) 1509
AsuC2I CCSGG 1 cut(s) 2082
AsuHPI GGTGA 5 cut(s) 107, 960, 1738, 2032, 2037
AvaI CYCGRG 2 cut(s) 757, 1139
AvaII GGWCC 1 cut(s) 1509
BanI GGYRCC 2 cut(s) 859, 925
BarI GAAGNNNNNNTAC 4 cut(s) 444, 476, 904, 936
BccI CCATC 3 cut(s) 1049, 1775, 2128
BceAI ACGGC 2 cut(s) 2157, 2185
BciT130I CCWGG 3 cut(s) 354, 544, 1680
BciVI GTATCC 1 cut(s) 1041
BclI TGATCA 2 cut(s) 808, 1578
BcnI CCSGG 1 cut(s) 2082
BcoDI GTCTC 3 cut(s) 247, 500, 1599
BcuI ACTAGT 1 cut(s) 1658
BfaI CTAG 5 cut(s) 290, 440, 1046, 1166, 1659
BfmI CTRYAG 1 cut(s) 1302
BfuAI ACCTGC 2 cut(s) 357, 737
BfuI GTATCC 1 cut(s) 1041
BmcAI AGTACT 1 cut(s) 828
Bme1390I CCNGG 4 cut(s) 354, 544, 1680, 2082
Bme18I GGWCC 1 cut(s) 1509
BmeRI GACNNNNNGTC 1 cut(s) 63
BmeT110I CYCGRG 2 cut(s) 757, 1139
BmgT120I GGNCC 1 cut(s) 1509
BmiI GGNNCC 3 cut(s) 367, 861, 927
BmrFI CCNGG 4 cut(s) 354, 544, 1680, 2082
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 8 cut(s) 225, 507, 675, 1192, 1411, 1686, 1975, 2285
BmuI ACTGGG 1 cut(s) 371
BplI GAGNNNNNCTC 4 cut(s) 1122, 1154, 2052, 2084
BpmI CTGGAG 1 cut(s) 1701
BpuEI CTTGAG 5 cut(s) 271, 606, 1099, 1779, 2173
BpuMI CCSGG 1 cut(s) 2082
BsaBI GATNNNNATC 1 cut(s) 1973
BsaI GGTCTC 1 cut(s) 500
BsaWI WCCGGW 1 cut(s) 2096
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 1965
Bse1I ACTGG 4 cut(s) 366, 834, 1056, 2106
Bse3DI GCAATG 2 cut(s) 1546, 2259
Bse8I GATNNNNATC 1 cut(s) 1973
BseBI CCWGG 3 cut(s) 354, 544, 1680
BseGI GGATG 6 cut(s) 78, 1060, 1591, 1854, 1942, 2276
BseJI GATNNNNATC 1 cut(s) 1973
BseLI CCNNNNNNNGG 2 cut(s) 214, 1965
BseMI GCAATG 2 cut(s) 1546, 2259
BseMII CTCAG 1 cut(s) 1800
BseNI ACTGG 4 cut(s) 366, 834, 1056, 2106
BseRI GAGGAG 3 cut(s) 609, 1736, 2140
BseX3I CGGCCG 1 cut(s) 2170
BsgI GTGCAG 3 cut(s) 69, 798, 1845
Bsh1236I CGCG 2 cut(s) 199, 1418
Bsh1285I CGRYCG 2 cut(s) 1213, 2173
BshFI GGCC 4 cut(s) 1396, 1913, 2006, 2172
BshNI GGYRCC 2 cut(s) 859, 925
BsiEI CGRYCG 2 cut(s) 1213, 2173
BsiHKCI CYCGRG 2 cut(s) 757, 1139
BsiSI CCGG 2 cut(s) 2082, 2097
BslFI GGGAC 3 cut(s) 576, 1358, 1870
BslI CCNNNNNNNGG 2 cut(s) 214, 1965
BsmAI GTCTC 3 cut(s) 247, 500, 1599
BsmFI GGGAC 3 cut(s) 576, 1358, 1870
BsnI GGCC 4 cut(s) 1396, 1913, 2006, 2172
Bso31I GGTCTC 1 cut(s) 500
BsoBI CYCGRG 2 cut(s) 757, 1139
BspACI CCGC 5 cut(s) 300, 1418, 1537, 1702, 1910
BspANI GGCC 4 cut(s) 1396, 1913, 2006, 2172
BspCNI CTCAG 1 cut(s) 1801
BspFNI CGCG 2 cut(s) 199, 1418
BspHI TCATGA 1 cut(s) 844
BspLI GGNNCC 3 cut(s) 367, 861, 927
BspMI ACCTGC 2 cut(s) 357, 737
BspPI GGATC 5 cut(s) 161, 172, 313, 335, 1556
BspT107I GGYRCC 2 cut(s) 859, 925
BspTNI GGTCTC 1 cut(s) 500
BsrDI GCAATG 2 cut(s) 1546, 2259
BsrI ACTGG 4 cut(s) 366, 834, 1056, 2106
Bst2UI CCWGG 3 cut(s) 354, 544, 1680
Bst6I CTCTTC 3 cut(s) 99, 1163, 2287
BstAPI GCANNNNNTGC 2 cut(s) 785, 1112
BstC8I GCNNGC 3 cut(s) 786, 1104, 1207
BstDEI CTNAG 3 cut(s) 68, 1437, 1809
BstF5I GGATG 6 cut(s) 78, 1060, 1591, 1854, 1942, 2276
BstFNI CGCG 2 cut(s) 199, 1418
BstHHI GCGC 2 cut(s) 199, 1450
BstMAI GTCTC 3 cut(s) 247, 500, 1599
BstMCI CGRYCG 2 cut(s) 1213, 2173
BstMWI GCNNNNNNNGC 7 cut(s) 194, 299, 785, 1112, 1649, 1907, 2248
BstNI CCWGG 3 cut(s) 354, 544, 1680
BstNSI RCATGY 6 cut(s) 429, 1106, 1209, 1292, 1523, 1998
BstSCI CCNGG 4 cut(s) 352, 542, 1678, 2080
BstSFI CTRYAG 1 cut(s) 1302
BstUI CGCG 2 cut(s) 199, 1418
BstX2I RGATCY 4 cut(s) 153, 305, 340, 1548
BstXI CCANNNNNNTGG 2 cut(s) 829, 2137
BstYI RGATCY 4 cut(s) 153, 305, 340, 1548
BstZI CGGCCG 1 cut(s) 2170
BsuI GTATCC 1 cut(s) 1041
BsuRI GGCC 4 cut(s) 1396, 1913, 2006, 2172
BtsCI GGATG 6 cut(s) 78, 1060, 1591, 1854, 1942, 2276
BtsI GCAGTG 1 cut(s) 2249
BtsIMutI CAGTG 2 cut(s) 933, 2249
BveI ACCTGC 2 cut(s) 357, 737
Cac8I GCNNGC 3 cut(s) 786, 1104, 1207
CciI TCATGA 1 cut(s) 844
CfoI GCGC 2 cut(s) 199, 1450
Cfr13I GGNCC 1 cut(s) 1509
CseI GACGC 3 cut(s) 432, 1424, 1894
Csp6I GTAC 6 cut(s) 433, 827, 860, 926, 2342, 2375
CviQI GTAC 6 cut(s) 433, 827, 860, 926, 2342, 2375
DdeI CTNAG 3 cut(s) 68, 1437, 1809
DraIII CACNNNGTG 1 cut(s) 683
DriI GACNNNNNGTC 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 1911, 2170
EagI CGGCCG 1 cut(s) 2170
Eam1104I CTCTTC 3 cut(s) 99, 1163, 2287
Eam1105I GACNNNNNGTC 1 cut(s) 63
EarI CTCTTC 3 cut(s) 99, 1163, 2287
EclXI CGGCCG 1 cut(s) 2170
Eco147I AGGCCT 1 cut(s) 1396
Eco31I GGTCTC 1 cut(s) 500
Eco32I GATATC 1 cut(s) 2013
Eco47I GGWCC 1 cut(s) 1509
Eco52I CGGCCG 1 cut(s) 2170
Eco57I CTGAAG 3 cut(s) 582, 1585, 2303
Eco88I CYCGRG 2 cut(s) 757, 1139
EcoRII CCWGG 3 cut(s) 352, 542, 1678
EcoRV GATATC 1 cut(s) 2013
EcoT22I ATGCAT 2 cut(s) 668, 1207
FaqI GGGAC 3 cut(s) 576, 1358, 1870
FauI CCCGC 1 cut(s) 1695
FbaI TGATCA 2 cut(s) 808, 1578
FokI GGATG 6 cut(s) 85, 1067, 1598, 1861, 1929, 2263
FspBI CTAG 5 cut(s) 290, 440, 1046, 1166, 1659
GlaI GCGC 2 cut(s) 198, 1449
GsuI CTGGAG 1 cut(s) 1701
HaeIII GGCC 4 cut(s) 1396, 1913, 2006, 2172
HapII CCGG 2 cut(s) 2082, 2097
HgaI GACGC 3 cut(s) 432, 1424, 1894
HhaI GCGC 2 cut(s) 199, 1450
Hin6I GCGC 2 cut(s) 197, 1448
HinP1I GCGC 2 cut(s) 197, 1448
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 9 cut(s) 53, 134, 529, 672, 1093, 1424, 1456, 1463, 2288
HpaI GTTAAC 1 cut(s) 819
HpaII CCGG 2 cut(s) 2082, 2097
HphI GGTGA 5 cut(s) 107, 960, 1738, 2032, 2037
Hpy166II GTNNAC 1 cut(s) 819
Hpy188I TCNGA 8 cut(s) 414, 671, 1604, 1810, 1968, 1984, 2217, 2287
Hpy8I GTNNAC 1 cut(s) 819
Hpy99I CGWCG 2 cut(s) 1888, 1934
HpyAV CCTTC 8 cut(s) 38, 188, 606, 631, 897, 1259, 1609, 1755
HpyCH4IV ACGT 5 cut(s) 26, 550, 734, 1028, 2377
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 299, 785, 1112, 1649, 1907, 2248
HpyF3I CTNAG 3 cut(s) 68, 1437, 1809
HpySE526I ACGT 5 cut(s) 26, 550, 734, 1028, 2377
HspAI GCGC 2 cut(s) 197, 1448
KpnI GGTACC 2 cut(s) 863, 929
Ksp22I TGATCA 2 cut(s) 808, 1578
KspAI GTTAAC 1 cut(s) 819
LmnI GCTCC 4 cut(s) 194, 1657, 1682, 2153
LweI GCATC 8 cut(s) 225, 507, 675, 1192, 1411, 1686, 1975, 2285
MaeI CTAG 5 cut(s) 290, 440, 1046, 1166, 1659
MaeII ACGT 5 cut(s) 26, 550, 734, 1028, 2377
MaeIII GTNAC 6 cut(s) 22, 931, 1152, 1918, 2165, 2197
MfeI CAATTG 1 cut(s) 2232
MflI RGATCY 4 cut(s) 153, 305, 340, 1548
MlyI GAGTC 3 cut(s) 143, 666, 2297
MmeI TCCRAC 1 cut(s) 1679
Mph1103I ATGCAT 2 cut(s) 668, 1207
MroXI GAANNNNTTC 1 cut(s) 52
MseI TTAA 9 cut(s) 486, 818, 1067, 1220, 1274, 1388, 1530, 1559, 2021
MslI CAYNNNNRTG 3 cut(s) 1867, 2129, 2135
MspA1I CMGCKG 4 cut(s) 302, 1453, 1702, 2251
MspI CCGG 2 cut(s) 2082, 2097
MspR9I CCNGG 4 cut(s) 354, 544, 1680, 2082
MunI CAATTG 1 cut(s) 2232
MvaI CCWGG 3 cut(s) 354, 544, 1680
MvnI CGCG 2 cut(s) 199, 1418
MwoI GCNNNNNNNGC 7 cut(s) 194, 299, 785, 1112, 1649, 1907, 2248
NciI CCSGG 1 cut(s) 2082
NlaIV GGNNCC 3 cut(s) 367, 861, 927
NmuCI GTSAC 1 cut(s) 931
NsiI ATGCAT 2 cut(s) 668, 1207
NspI RCATGY 6 cut(s) 429, 1106, 1209, 1292, 1523, 1998
PaeI GCATGC 2 cut(s) 1106, 1209
PaeR7I CTCGAG 2 cut(s) 757, 1139
PagI TCATGA 1 cut(s) 844
PceI AGGCCT 1 cut(s) 1396
PciI ACATGT 1 cut(s) 1288
PdmI GAANNNNTTC 1 cut(s) 52
PfeI GAWTC 6 cut(s) 53, 529, 1093, 1424, 1456, 1463
PflMI CCANNNNNTGG 1 cut(s) 214
PleI GAGTC 3 cut(s) 142, 666, 2296
PpsI GAGTC 3 cut(s) 142, 666, 2296
PscI ACATGT 1 cut(s) 1288
Psp1406I AACGTT 1 cut(s) 26
Psp6I CCWGG 3 cut(s) 352, 542, 1678
PspGI CCWGG 3 cut(s) 352, 542, 1678
PspN4I GGNNCC 3 cut(s) 367, 861, 927
PspPI GGNCC 1 cut(s) 1509
PspXI VCTCGAGB 1 cut(s) 1139
PsuI RGATCY 4 cut(s) 153, 305, 340, 1548
PvuII CAGCTG 2 cut(s) 1453, 2251
RsaI GTAC 6 cut(s) 434, 828, 861, 927, 2343, 2376
RsaNI GTAC 6 cut(s) 433, 827, 860, 926, 2342, 2375
RseI CAYNNNNRTG 3 cut(s) 1867, 2129, 2135
SaqAI TTAA 9 cut(s) 486, 818, 1067, 1220, 1274, 1388, 1530, 1559, 2021
Sau96I GGNCC 1 cut(s) 1509
ScaI AGTACT 1 cut(s) 828
SchI GAGTC 3 cut(s) 143, 666, 2297
ScrFI CCNGG 4 cut(s) 354, 544, 1680, 2082
SfaNI GCATC 8 cut(s) 225, 507, 675, 1192, 1411, 1686, 1975, 2285
SfcI CTRYAG 1 cut(s) 1302
Sfr274I CTCGAG 2 cut(s) 757, 1139
SinI GGWCC 1 cut(s) 1509
SlaI CTCGAG 2 cut(s) 757, 1139
SmiMI CAYNNNNRTG 3 cut(s) 1867, 2129, 2135
SmlI CTYRAG 7 cut(s) 250, 621, 757, 1078, 1139, 1794, 2188
SmoI CTYRAG 7 cut(s) 250, 621, 757, 1078, 1139, 1794, 2188
SpeI ACTAGT 1 cut(s) 1658
SphI GCATGC 2 cut(s) 1106, 1209
SseBI AGGCCT 1 cut(s) 1396
SsiI CCGC 5 cut(s) 300, 1418, 1537, 1702, 1910
SspI AATATT 1 cut(s) 647
SspMI CTAG 5 cut(s) 290, 440, 1046, 1166, 1659
StuI AGGCCT 1 cut(s) 1396
StyD4I CCNGG 4 cut(s) 352, 542, 1678, 2080
TaiI ACGT 5 cut(s) 29, 553, 737, 1031, 2380
TaqI TCGA 4 cut(s) 56, 758, 1140, 1883
TatI WGTACW 2 cut(s) 432, 826
TauI GCSGC 3 cut(s) 302, 1421, 1913
TfiI GAWTC 6 cut(s) 53, 529, 1093, 1424, 1456, 1463
Tru1I TTAA 9 cut(s) 486, 818, 1067, 1220, 1274, 1388, 1530, 1559, 2021
Tru9I TTAA 9 cut(s) 486, 818, 1067, 1220, 1274, 1388, 1530, 1559, 2021
TscAI CASTG 2 cut(s) 940, 2249
TseFI GTSAC 1 cut(s) 931
Tsp45I GTSAC 1 cut(s) 931
TspGWI ACGGA 5 cut(s) 349, 967, 1000, 1918, 2315
TspRI CASTG 2 cut(s) 940, 2249
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 1509
XapI RAATTY 4 cut(s) 1246, 1312, 1373, 1432
XbaI TCTAGA 1 cut(s) 1045
XceI RCATGY 6 cut(s) 429, 1106, 1209, 1292, 1523, 1998
XhoI CTCGAG 2 cut(s) 757, 1139
XmnI GAANNNNTTC 1 cut(s) 52
XspI CTAG 5 cut(s) 290, 440, 1046, 1166, 1659
ZrmI AGTACT 1 cut(s) 828
Zsp2I ATGCAT 2 cut(s) 668, 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.