Rroxscaffold_4G00328950

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000157
Physical Location & Seq
Forward (+)
62082350 .. 62086043
3694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328950.1

Sequence Viewer

Length: 507 bp
ATGGTAATCCAATCATTCGGGTTCATCGAACATGCCCAATCTCTTGTCGAACCCACTGTTTTGTCCGATCGTGGTTGCCGGAATCCGGCTCCTCATGGATTCTCGACCGTGCTTGCACGATCTGGGTTTTATGATATGAAATCAGGAAATTCTGAGTTTGTAGTTAAGCTTATTGAGGTTTGTCCTAGTTTGATATGGGAAACAAATGACAGAAATTGGACTATAATACATGCAGCAGTTTCGCATCGTGATGAGACTATCTTCAATTTACTGCAAGAGTTTGGTTTTTTCAAGGATGTGATAGGGGACTTCAGAGATAGCAAAAATGGTGATACATTACTTCACCTAGCTGCAAGATTAGCTCCGACCAGTCAATTGGACAAACTACCTGGAGCAGCTTTTCAAATGCAGCGGGAACTATTATGGTTCGAGGTACCTAGCTATTCCGTCTCGTATATCTTGCACATTACAAGAGAAACTAATTACTTTGATAGGTGTAGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

5.63

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AciI CCGC 1 cut(s) 412
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 295
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 3 cut(s) 265, 292, 404
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 5 cut(s) 169, 350, 362, 398, 441
AluI AGCT 5 cut(s) 169, 350, 362, 398, 441
Alw26I GTCTC 2 cut(s) 248, 454
ApeKI GCWGC 4 cut(s) 233, 350, 395, 409
ApoI RAATTY 1 cut(s) 148
Asp718I GGTACC 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 335, 341
BanI GGYRCC 1 cut(s) 433
BbvI GCAGC 4 cut(s) 245, 337, 407, 421
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 248, 454
BfaI CTAG 3 cut(s) 186, 347, 438
BisI GCNGC 4 cut(s) 234, 351, 396, 410
BlsI GCNGC 4 cut(s) 235, 352, 397, 411
Bme1390I CCNGG 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 90, 435
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 4 cut(s) 245, 337, 407, 421
Bsh1285I CGRYCG 2 cut(s) 70, 108
BshNI GGYRCC 1 cut(s) 433
BsiEI CGRYCG 2 cut(s) 70, 108
BsiSI CCGG 2 cut(s) 79, 86
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 248, 454
BsmBI CGTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 67, 119
BspACI CCGC 1 cut(s) 412
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 90, 435
BspT107I GGYRCC 1 cut(s) 433
BsrI ACTGG 1 cut(s) 369
BssMI GATC 2 cut(s) 67, 119
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 58, 109
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 70, 122
BstMAI GTCTC 2 cut(s) 248, 454
BstMBI GATC 2 cut(s) 67, 119
BstMCI CGRYCG 2 cut(s) 70, 108
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 2 cut(s) 35, 233
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 245, 337, 407, 421
BstXI CCANNNNNNTGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 434
CviAII CATG 3 cut(s) 32, 95, 230
CviJI RGCY 6 cut(s) 89, 169, 350, 362, 398, 441
CviKI_1 RGCY 6 cut(s) 89, 169, 350, 362, 398, 441
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 69, 121
DpnII GATC 2 cut(s) 67, 119
Eco57I CTGAAG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 3 cut(s) 35, 98, 233
FaiI YATR 9 cut(s) 33, 96, 132, 137, 196, 224, 231, 424, 456
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 31, 94, 229
FauI CCCGC 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 234, 351, 396, 410
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 4 cut(s) 234, 351, 396, 410
FspBI CTAG 3 cut(s) 186, 347, 438
GluI GCNGC 4 cut(s) 234, 351, 396, 410
GsuI CTGGAG 1 cut(s) 411
HapII CCGG 2 cut(s) 79, 86
Hin1II CATG 3 cut(s) 35, 98, 233
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 82, 99
HpaII CCGG 2 cut(s) 79, 86
HphI GGTGA 2 cut(s) 335, 341
Hpy188I TCNGA 4 cut(s) 67, 154, 314, 366
Hpy188III TCNNGA 3 cut(s) 103, 144, 248
HpyCH4III ACNGT 2 cut(s) 58, 109
HpyCH4V TGCA 6 cut(s) 116, 233, 274, 353, 409, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 3 cut(s) 35, 98, 233
KpnI GGTACC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 67, 119
LmnI GCTCC 3 cut(s) 94, 367, 392
LpnPI CCDG 7 cut(s) 92, 99, 108, 129, 375, 382, 402
Lsp1109I GCAGC 4 cut(s) 245, 337, 407, 421
LweI GCATC 1 cut(s) 253
MaeI CTAG 3 cut(s) 186, 347, 438
MalI GATC 2 cut(s) 69, 121
MboI GATC 2 cut(s) 67, 119
MboII GAAGA 1 cut(s) 253
MfeI CAATTG 1 cut(s) 374
MluCI AATT 5 cut(s) 148, 214, 265, 374, 481
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 3 cut(s) 102, 169, 424
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 2 cut(s) 79, 86
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 2 cut(s) 67, 119
NlaIII CATG 3 cut(s) 35, 98, 233
NlaIV GGNNCC 2 cut(s) 90, 435
NspI RCATGY 2 cut(s) 35, 233
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 2 cut(s) 82, 99
PkrI GCNGC 4 cut(s) 235, 352, 397, 411
Ple19I CGATCG 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 90, 435
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 4 cut(s) 234, 351, 396, 410
Sau3AI GATC 2 cut(s) 67, 119
ScrFI CCNGG 1 cut(s) 390
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 5 cut(s) 148, 214, 265, 374, 481
SsiI CCGC 1 cut(s) 412
SspMI CTAG 3 cut(s) 186, 347, 438
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 58, 109
TaqI TCGA 4 cut(s) 27, 48, 104, 429
TasI AATT 5 cut(s) 148, 214, 265, 374, 481
TfiI GAWTC 2 cut(s) 82, 99
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 61
TseI GCWGC 4 cut(s) 233, 350, 395, 409
TspDTI ATGAA 2 cut(s) 13, 152
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 148
XceI RCATGY 2 cut(s) 35, 233
XspI CTAG 3 cut(s) 186, 347, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.