Rorug05G0223200

Ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
23095928 .. 23097018
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0223200.1

Sequence Viewer

Length: 453 bp
ATGGCTAATTCAAAGCAATATTTGTTTCTGATTATCTTGGCTTCATGGGCGGTTGTCGGTTTAGGGTCTATTCAGTCCATGGCATGCATGCAGAAACTCATGCCTTGTCAATCATATTTTAAGAAACTGGACAATGTTCCTGATACGTGTTGTACGCCGATGAAGAATATGCTATCGGAGACGGCGGATGATAAGAACTGCATTTGCGGCGTCTTTGGCAACCCCATCATGTTGAAGAACCTGAATATAACCCAGGATGATACCATGAAGCTTGCAAAGGCTTGTGGCTTGAAGGCTGACATTTCAAAATGCGACAAGAAGGAAAAGGATACTGCATCGCCATCGTCATCACCAAGTCCATCACCATCAGCTTCTAATGCAGCCTCTCGTTTCAGCAAATCTGGTTTCACAGCCTCTTTCATTGCAACTCTAATTTTTTCAGCAGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.09

Weight (kDa)

8.79

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 17 - 104 1.4e-11 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 50, 185, 207
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 4 cut(s) 12, 235, 292, 306
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 2 cut(s) 271, 371
AluI AGCT 2 cut(s) 271, 371
Alw26I GTCTC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 380, 443
AsuHPI GGTGA 2 cut(s) 342, 354
BbvI GCAGC 1 cut(s) 392
BccI CCATC 4 cut(s) 233, 349, 367, 373
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 3 cut(s) 208, 381, 444
BlsI GCNGC 3 cut(s) 209, 382, 445
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 78, 252
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 78, 252
BseGI GGATG 2 cut(s) 193, 262
BseMI GCAATG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 3 cut(s) 50, 185, 207
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 78, 252
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 85, 89, 273
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 193, 262
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 377
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 87, 91
BstSCI CCNGG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 392
BsuI GTATCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 193, 262
Cac8I GCNNGC 3 cut(s) 85, 89, 273
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 153
CviAII CATG 7 cut(s) 45, 79, 84, 88, 100, 229, 265
CviJI RGCY 9 cut(s) 5, 41, 271, 281, 288, 296, 371, 383, 413
CviKI_1 RGCY 9 cut(s) 5, 41, 271, 281, 288, 296, 371, 383, 413
CviQI GTAC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 7 cut(s) 48, 82, 87, 91, 103, 232, 268
FatI CATG 7 cut(s) 44, 78, 83, 87, 99, 228, 264
Fnu4HI GCNGC 3 cut(s) 208, 381, 444
FokI GGATG 2 cut(s) 200, 269
Fsp4HI GCNGC 3 cut(s) 208, 381, 444
GluI GCNGC 3 cut(s) 208, 381, 444
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 7 cut(s) 48, 82, 87, 91, 103, 232, 268
HindIII AAGCTT 1 cut(s) 269
HphI GGTGA 2 cut(s) 342, 354
Hpy188I TCNGA 2 cut(s) 30, 178
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 286, 313
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 7 cut(s) 87, 91, 201, 275, 335, 380, 425
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 377
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 7 cut(s) 48, 82, 87, 91, 103, 232, 268
LpnPI CCDG 6 cut(s) 113, 153, 239, 254, 266, 387
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 1 cut(s) 344
MaeII ACGT 1 cut(s) 146
MboII GAAGA 2 cut(s) 175, 247
MluCI AATT 2 cut(s) 7, 432
MnlI CCTC 2 cut(s) 394, 424
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 2 cut(s) 120, 451
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 377
NcoI CCATGG 1 cut(s) 78
NlaIII CATG 7 cut(s) 48, 82, 87, 91, 103, 232, 268
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 2 cut(s) 87, 91
PaeI GCATGC 2 cut(s) 87, 91
PkrI GCNGC 3 cut(s) 209, 382, 445
Ppu21I YACGTR 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 120, 451
SatI GCNGC 3 cut(s) 208, 381, 444
ScrFI CCNGG 1 cut(s) 254
SetI ASST 4 cut(s) 149, 243, 273, 373
SfaNI GCATC 1 cut(s) 344
SphI GCATGC 2 cut(s) 87, 91
Sse9I AATT 2 cut(s) 7, 432
SsiI CCGC 3 cut(s) 50, 185, 207
SspI AATATT 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 78
TaiI ACGT 1 cut(s) 149
TasI AATT 2 cut(s) 7, 432
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 120, 451
Tru9I TTAA 2 cut(s) 120, 451
TseI GCWGC 2 cut(s) 380, 443
TspDTI ATGAA 4 cut(s) 33, 176, 281, 409
XceI RCATGY 2 cut(s) 87, 91
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.