Rroxscaffold_1G00035630

Ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
51765638 .. 51767690
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035630.1

Sequence Viewer

Length: 414 bp
ATGCCTTTGGACGAAATCTTGAGAAATGATCATGACGATGTGATGAGACTAATCAAACATCCTTCAAAATTATTGTTCGATGCTACAAAATTAGGAAATTATGAGTTCCCGGCGGTGCTTATTAACTCTTATCCCGATTTAATATGGCAACTTGATGATGAAAATCGGAGTATAATCCATGTTGTTGTTTTGCATCGTCATGCAAGTATCTTCAATTTAGTGCATGAGATAGGCTCTATCAAGGATATGATAGTGACATTTACCGATAATGATGAGACTAATAACATTTTACATATGGCTGCAAAATTAGCACCTCCAAATCAACTCAACCTTGTATCGGGAGCAGCTCTTCAAATGCAGCGAGAGTTGGTATGGTTTGAGGAAGTAAAAAGATTGTACAACCCAACTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.82

Weight (kDa)

5.37

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 3 cut(s) 66, 214, 353
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 2 cut(s) 40, 269
ApeKI GCWGC 3 cut(s) 299, 344, 358
AsuC2I CCSGG 1 cut(s) 110
BbvI GCAGC 3 cut(s) 286, 356, 370
BclI TGATCA 1 cut(s) 28
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 40, 269
BisI GCNGC 3 cut(s) 300, 345, 359
BlsI GCNGC 3 cut(s) 301, 346, 360
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 70, 202
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 162
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 337
BseXI GCAGC 3 cut(s) 286, 356, 370
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 40, 269
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 113
BspHI TCATGA 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 354
BsrGI TGTACA 1 cut(s) 396
BssMI GATC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 354
BstAUI TGTACA 1 cut(s) 396
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 40, 269
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 286, 356, 370
BtsCI GGATG 1 cut(s) 58
CciI TCATGA 1 cut(s) 31
Csp6I GTAC 1 cut(s) 397
CviAII CATG 4 cut(s) 32, 179, 200, 224
CviJI RGCY 3 cut(s) 234, 299, 347
CviKI_1 RGCY 3 cut(s) 234, 299, 347
CviQI GTAC 1 cut(s) 397
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
FaeI CATG 4 cut(s) 35, 182, 203, 227
FatI CATG 4 cut(s) 31, 178, 199, 223
FauNDI CATATG 1 cut(s) 294
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 300, 345, 359
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 3 cut(s) 300, 345, 359
GluI GCNGC 3 cut(s) 300, 345, 359
HapII CCGG 1 cut(s) 110
Hin1II CATG 4 cut(s) 35, 182, 203, 227
HpaII CCGG 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 4 cut(s) 19, 32, 134, 339
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 193, 203, 223, 302, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
Hsp92II CATG 4 cut(s) 35, 182, 203, 227
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 1 cut(s) 123
Lsp1109I GCAGC 3 cut(s) 286, 356, 370
LweI GCATC 2 cut(s) 70, 202
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 202, 341
MluCI AATT 5 cut(s) 68, 89, 97, 214, 305
MnlI CCTC 2 cut(s) 324, 373
MseI TTAA 2 cut(s) 123, 140
MslI CAYNNNNRTG 2 cut(s) 36, 198
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 294
NdeII GATC 1 cut(s) 28
NlaIII CATG 4 cut(s) 35, 182, 203, 227
NmuCI GTSAC 1 cut(s) 253
PagI TCATGA 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 354
PkrI GCNGC 3 cut(s) 301, 346, 360
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 2 cut(s) 36, 198
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 2 cut(s) 123, 140
SatI GCNGC 3 cut(s) 300, 345, 359
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 110
SetI ASST 3 cut(s) 316, 333, 349
SfaNI GCATC 2 cut(s) 70, 202
SmiMI CAYNNNNRTG 2 cut(s) 36, 198
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 5 cut(s) 68, 89, 97, 214, 305
SsiI CCGC 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 108
TaqI TCGA 1 cut(s) 78
TasI AATT 5 cut(s) 68, 89, 97, 214, 305
TatI WGTACW 1 cut(s) 396
Tru1I TTAA 2 cut(s) 123, 140
Tru9I TTAA 2 cut(s) 123, 140
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 299, 344, 358
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.