Rmu_sc0038822.1_g000001

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038822.1
OG0000157
Physical Location & Seq
Forward (+)
52 .. 1494
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038822.1_g000001.1.cds

Sequence Viewer

Length: 1041 bp
atgacaccactctatatggccgccttgttggggcagtctgtaatggcagataacctgtactctagaaccaaggaaatgttagaggaagccgaccgacaagcgttgttttttacttgtatcgataatggtttgtatgatctagctatgaagatgctaagaagtgatagagcattagctaaggctcgtaatgcaaaacaagaaacagctttgcatatcttggctagaacgccttcagaattcaccagccaaagtccaggaatgtggagtagactcatcaactcatttatcccaggttggaagttctcatacaatggaaacatgaaacaaatcaatgaagcccttcaactagtcaaatgcctttggacagaaatcttgagaaatgatcatgacgatgtgatgagactaatcaaacatccttcaaaattactgtttgatgctacaaaattaggaaattatgagttcctggcagtgcttattaactcttatcctgatttaatatggcaacttgatgacgaaaatcggagtataatccatgttgctgttttgcatcgtcatgcaagtatcttcaatttagtgcatgagataggctctatcaaggatatgatagtgacatttactgataatgatgagactaataacattttacatatggctgcaaaattagcacccccaaatcaactcaaccttgtatcaggagcagctcttcaaatgcagcgagagttggcatggtttgaggaagtaaaaaagattgtacaacccaactccatagagatgaaaaacaagaaaggaaacacaccacgagaattgttcacaagtgagcataaagagttgttacacaaaggagaagcatggatgaaggacactgcaaattcatgcatgattgttgcggctcttatcgcaactgttgtattttcagctgcatttagcgtacctggtggtacgtctgataatacaggacaaccaaactttctaaaagagactgctttcctattctttgccatagcagatggagtagcactcgtttcctcttcaacttcaata
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

347

Amino Acids

38.98

Weight (kDa)

6.21

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 268
AciI CCGC 2 cut(s) 21, 887
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 236, 868
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 4 cut(s) 59, 753, 930, 940
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 6 cut(s) 344, 420, 568, 707, 1032, 1038
AhlI ACTAGT 1 cut(s) 346
AjnI CCWGG 4 cut(s) 253, 289, 462, 931
AluBI AGCT 5 cut(s) 143, 176, 206, 701, 917
AluI AGCT 5 cut(s) 143, 176, 206, 701, 917
Alw26I GTCTC 3 cut(s) 394, 623, 971
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 653, 698, 712, 917
ApoI RAATTY 2 cut(s) 236, 868
Asp700I GAANNNNTTC 2 cut(s) 229, 339
AsuHPI GGTGA 1 cut(s) 232
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BauI CACGAG 1 cut(s) 798
BbvI GCAGC 4 cut(s) 640, 710, 724, 904
BccI CCATC 1 cut(s) 1001
BciT130I CCWGG 4 cut(s) 255, 291, 464, 933
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 3 cut(s) 394, 623, 971
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 4 cut(s) 63, 140, 222, 347
BisI GCNGC 6 cut(s) 21, 654, 699, 713, 888, 918
BlsI GCNGC 6 cut(s) 22, 655, 700, 714, 889, 919
Bme1390I CCNGG 4 cut(s) 255, 291, 464, 933
BmrFI CCNGG 4 cut(s) 255, 291, 464, 933
BmsI GCATC 3 cut(s) 141, 424, 556
BplI GAGNNNNNCTC 4 cut(s) 572, 604, 1002, 1034
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 394
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 69, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseBI CCWGG 4 cut(s) 255, 291, 464, 933
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 69, 289
BseGI GGATG 2 cut(s) 412, 858
BseLI CCNNNNNNNGG 1 cut(s) 30
BseXI GCAGC 4 cut(s) 640, 710, 724, 904
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 20
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 3 cut(s) 394, 623, 971
BsnI GGCC 1 cut(s) 20
Bsp1407I TGTACA 1 cut(s) 751
Bsp143I GATC 2 cut(s) 136, 382
BspACI CCGC 2 cut(s) 21, 887
BspANI GGCC 1 cut(s) 20
BspDI ATCGAT 1 cut(s) 120
BspHI TCATGA 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 751
BssECI CCNNGG 2 cut(s) 69, 289
BssMI GATC 2 cut(s) 136, 382
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 798
Bst2UI CCWGG 4 cut(s) 255, 291, 464, 933
Bst4CI ACNGT 2 cut(s) 429, 904
Bst6I CTCTTC 2 cut(s) 708, 1033
BstAUI TGTACA 1 cut(s) 751
BstDEI CTNAG 2 cut(s) 155, 177
BstF5I GGATG 2 cut(s) 412, 858
BstKTI GATC 2 cut(s) 139, 385
BstMAI GTCTC 3 cut(s) 394, 623, 971
BstMBI GATC 2 cut(s) 136, 382
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 188, 662, 896
BstNI CCWGG 4 cut(s) 255, 291, 464, 933
BstSCI CCNGG 4 cut(s) 253, 289, 462, 931
BstV1I GCAGC 4 cut(s) 640, 710, 724, 904
BstXI CCANNNNNNTGG 1 cut(s) 261
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 20
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 2 cut(s) 412, 858
BtsI GCAGTG 2 cut(s) 474, 861
BtsIMutI CAGTG 2 cut(s) 474, 861
CciI TCATGA 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 931
Csp6I GTAC 4 cut(s) 58, 752, 929, 939
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 9 cut(s) 319, 386, 533, 554, 578, 726, 849, 873, 877
CviQI GTAC 4 cut(s) 58, 752, 929, 939
DdeI CTNAG 2 cut(s) 155, 177
DpnI GATC 2 cut(s) 138, 384
DpnII GATC 2 cut(s) 136, 382
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 708, 1033
EarI CTCTTC 2 cut(s) 708, 1033
Eco130I CCWWGG 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 4 cut(s) 253, 289, 462, 931
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 878
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 9 cut(s) 322, 389, 536, 557, 581, 729, 852, 876, 880
FatI CATG 9 cut(s) 318, 385, 532, 553, 577, 725, 848, 872, 876
FauNDI CATATG 1 cut(s) 648
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 6 cut(s) 21, 654, 699, 713, 888, 918
FokI GGATG 2 cut(s) 399, 865
Fsp4HI GCNGC 6 cut(s) 21, 654, 699, 713, 888, 918
FspBI CTAG 4 cut(s) 63, 140, 222, 347
GluI GCNGC 6 cut(s) 21, 654, 699, 713, 888, 918
HaeIII GGCC 1 cut(s) 20
Hin1II CATG 9 cut(s) 322, 389, 536, 557, 581, 729, 852, 876, 880
HinfI GANTC 1 cut(s) 270
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 269, 810
Hpy188I TCNGA 3 cut(s) 235, 522, 946
Hpy188III TCNNGA 5 cut(s) 63, 373, 386, 488, 693
Hpy8I GTNNAC 2 cut(s) 269, 810
HpyAV CCTTC 4 cut(s) 240, 350, 426, 850
HpyCH4III ACNGT 2 cut(s) 429, 904
HpyCH4IV ACGT 1 cut(s) 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 662, 896
HpyF3I CTNAG 2 cut(s) 155, 177
HpySE526I ACGT 1 cut(s) 941
Hsp92II CATG 9 cut(s) 322, 389, 536, 557, 581, 729, 852, 876, 880
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 2 cut(s) 136, 382
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 1 cut(s) 695
Lsp1109I GCAGC 4 cut(s) 640, 710, 724, 904
LweI GCATC 3 cut(s) 141, 424, 556
MabI ACCWGGT 1 cut(s) 931
MaeI CTAG 4 cut(s) 63, 140, 222, 347
MaeII ACGT 1 cut(s) 941
MaeIII GTNAC 2 cut(s) 607, 831
MalI GATC 2 cut(s) 138, 384
MboI GATC 2 cut(s) 136, 382
MboII GAAGA 4 cut(s) 160, 556, 695, 1020
MluCI AATT 8 cut(s) 236, 422, 443, 451, 568, 659, 803, 868
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 3 cut(s) 76, 727, 1036
Mph1103I ATGCAT 1 cut(s) 878
MroXI GAANNNNTTC 2 cut(s) 229, 339
MseI TTAA 2 cut(s) 477, 494
MslI CAYNNNNRTG 3 cut(s) 390, 552, 770
MspA1I CMGCKG 1 cut(s) 917
MspR9I CCNGG 4 cut(s) 255, 291, 464, 933
MvaI CCWGG 4 cut(s) 255, 291, 464, 933
MwoI GCNNNNNNNGC 3 cut(s) 188, 662, 896
NdeI CATATG 1 cut(s) 648
NdeII GATC 2 cut(s) 136, 382
NlaIII CATG 9 cut(s) 322, 389, 536, 557, 581, 729, 852, 876, 880
NmuCI GTSAC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 878
PagI TCATGA 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 708
PdmI GAANNNNTTC 2 cut(s) 229, 339
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 6 cut(s) 22, 655, 700, 714, 889, 919
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 4 cut(s) 253, 289, 462, 931
PspGI CCWGG 4 cut(s) 253, 289, 462, 931
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 4 cut(s) 59, 753, 930, 940
RsaNI GTAC 4 cut(s) 58, 752, 929, 939
RseI CAYNNNNRTG 3 cut(s) 390, 552, 770
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 2 cut(s) 477, 494
SatI GCNGC 6 cut(s) 21, 654, 699, 713, 888, 918
Sau3AI GATC 2 cut(s) 136, 382
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 4 cut(s) 255, 291, 464, 933
SexAI ACCWGGT 1 cut(s) 931
SfaNI GCATC 3 cut(s) 141, 424, 556
SmiMI CAYNNNNRTG 3 cut(s) 390, 552, 770
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SpeI ACTAGT 1 cut(s) 346
Sse9I AATT 8 cut(s) 236, 422, 443, 451, 568, 659, 803, 868
SsiI CCGC 2 cut(s) 21, 887
SspMI CTAG 4 cut(s) 63, 140, 222, 347
StyD4I CCNGG 4 cut(s) 253, 289, 462, 931
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 429, 904
TaiI ACGT 1 cut(s) 944
TaqI TCGA 1 cut(s) 120
TaqII GACCGA 1 cut(s) 108
TasI AATT 8 cut(s) 236, 422, 443, 451, 568, 659, 803, 868
TatI WGTACW 2 cut(s) 57, 751
TauI GCSGC 2 cut(s) 23, 890
Tru1I TTAA 2 cut(s) 477, 494
Tru9I TTAA 2 cut(s) 477, 494
TscAI CASTG 2 cut(s) 474, 868
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 4 cut(s) 653, 698, 712, 917
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 6 cut(s) 161, 335, 348, 788, 861, 869
TspRI CASTG 2 cut(s) 474, 868
XapI RAATTY 2 cut(s) 236, 868
XbaI TCTAGA 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 268
XmnI GAANNNNTTC 2 cut(s) 229, 339
XspI CTAG 4 cut(s) 63, 140, 222, 347
Zsp2I ATGCAT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.