Rh5CG338700

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000157
Physical Location & Seq
Reverse (-)
38746731 .. 38750960
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG338700.1

Sequence Viewer

Length: 1179 bp
ATGGATGTAATTTATATATTCAACAAGTTAATTACAGAACTTGATCATTTGTCCTTTATAAAATCCTACACAGGAGAGCTATACCTTAATACATGTGTGCCGCTCAATAAGTATGCACTAAAAGGCAATTGGGAAGCTGCTGAACGAATCTTGATGGAGGATCGGAGGCTTTTGACTTTTAGCATAACAAGAGGATGGGACACTGTCCTTCACATTGCAGCAGGAGCAAGACATGTTCACTTTGTGGAGAAGCTGGTCGAAATGATGGACGAACAAGACTTGGCACTGCAAGACTCAAATCGAAACACTGCCTTCAGCATTGCTGCTGCTGCTGGAAGTATTGAAATTGCAGAGATTATGATGAAGAAGAACAAGAATTTGCCAACAATTCGAGGCGGTGCAGGAATGACACCACTCTATATGGCTGCCTTGTTGGGAGAATCTGTAATGGCAGAATACTTGTACTCTGGAACCAAGGAAATGTTGGAGGAAGCTGACAAGCAAGCGTTGTTTTTTACTTGTATCGATAATGGTTTGTATGATCTAGCTATGAAGATGCTAAGTGACAGAGCATTAGCTAAGGCTCGTAATGCAAAACAGGAAACAGCTTTGCATATCTTGGCTAGAATGCCTTCAGAATTCACCAGCCAAAGTCCAGGAATGTGGAGTAGACTCATCAACTCATTTATCCCAGGTTGGAAGTTCTCATACAATGGAAACATGAAACAAGTCAATGAAGCCCTTCAACTAGTCCAATGCCTTTGGACAGAAATCTTGAGAAATGATCATGACGATGTGATGAGACTAATCAAATATCCTTCAAAATTACTGTTCGACGCTACAAAATTAGGAAATTATGAGTTCCTGGCAGTGCTTATTAACTCTTATCCTGATTTAATATGGCAACTTGATGACAAAAATCGGAGTATAATCCACATTGCTGTTTTGCATCGTCATTCAAGTATCTTCAATTTAGTGCATGAGATAGGCTCCATCAAGGATTTGATAGTGACAATTACTGATGATGATGAGAGTAATAACATTTTACATATGGCTGCAAAATTAGCACCTCCAAATCAACTCAACCTTGTATCAGGAGCAGCTCTTCAAATGCAGCGAGAGTTGGTATGGTTTGAGGTACTTCGATCTCCCACTAACCCTATAGTTATTTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

392

Amino Acids

44.51

Weight (kDa)

5.8

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 42 - 125 9.9e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 70 - 157 8.2e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccBSI CCGCTC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 670
AciI CCGC 2 cut(s) 101, 396
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 376, 638
AcuI CTGAAG 2 cut(s) 298, 618
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 2 cut(s) 464, 1140
AflIII ACRYGT 2 cut(s) 92, 232
AgsI TTSAA 7 cut(s) 22, 344, 746, 822, 960, 970, 1109
AhlI ACTAGT 1 cut(s) 748
AjnI CCWGG 3 cut(s) 655, 691, 864
AluBI AGCT 8 cut(s) 79, 137, 253, 494, 548, 578, 608, 1103
AluI AGCT 8 cut(s) 79, 137, 253, 494, 548, 578, 608, 1103
Alw26I GTCTC 1 cut(s) 796
AlwI GGATC 1 cut(s) 168
ApeKI GCWGC 9 cut(s) 137, 218, 323, 326, 329, 425, 1055, 1100, 1114
ApoI RAATTY 2 cut(s) 376, 638
Asp700I GAANNNNTTC 2 cut(s) 631, 741
AsuHPI GGTGA 1 cut(s) 634
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
BbvI GCAGC 9 cut(s) 124, 230, 310, 313, 316, 412, 1042, 1112, 1126
BccI CCATC 4 cut(s) 148, 189, 259, 1001
BciT130I CCWGG 3 cut(s) 657, 693, 866
BclI TGATCA 2 cut(s) 43, 784
BcoDI GTCTC 1 cut(s) 796
BcuI ACTAGT 1 cut(s) 748
BfaI CTAG 4 cut(s) 545, 624, 749, 1177
BfmI CTRYAG 1 cut(s) 1161
Bme1390I CCNGG 3 cut(s) 657, 693, 866
BmiI GGNNCC 2 cut(s) 472, 991
BmrFI CCNGG 3 cut(s) 657, 693, 866
BmsI GCATC 2 cut(s) 546, 958
BplI GAGNNNNNCTC 2 cut(s) 974, 1006
Bpu10I CCTNAGC 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 796
Bsa29I ATCGAT 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 474, 691
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bse3DI GCAATG 3 cut(s) 213, 318, 936
BseBI CCWGG 3 cut(s) 657, 693, 866
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 474, 691
BseGI GGATG 2 cut(s) 10, 200
BseMI GCAATG 3 cut(s) 213, 318, 936
BseXI GCAGC 9 cut(s) 124, 230, 310, 313, 316, 412, 1042, 1112, 1126
BsgI GTGCAG 1 cut(s) 420
BshVI ATCGAT 1 cut(s) 525
BslFI GGGAC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 796
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 633
Bsp143I GATC 5 cut(s) 43, 160, 541, 784, 1145
BspACI CCGC 2 cut(s) 101, 396
BspDI ATCGAT 1 cut(s) 525
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 472, 991
BspPI GGATC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 1110
BsrBI CCGCTC 1 cut(s) 103
BsrDI GCAATG 3 cut(s) 213, 318, 936
BssECI CCNNGG 2 cut(s) 474, 691
BssMI GATC 5 cut(s) 43, 160, 541, 784, 1145
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 3 cut(s) 657, 693, 866
Bst4CI ACNGT 2 cut(s) 205, 831
Bst6I CTCTTC 1 cut(s) 1110
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 2 cut(s) 560, 579
BstF5I GGATG 2 cut(s) 10, 200
BstKTI GATC 5 cut(s) 46, 163, 544, 787, 1148
BstMAI GTCTC 1 cut(s) 796
BstMBI GATC 5 cut(s) 43, 160, 541, 784, 1145
BstMWI GCNNNNNNNGC 4 cut(s) 224, 329, 590, 1064
BstNI CCWGG 3 cut(s) 657, 693, 866
BstNSI RCATGY 2 cut(s) 96, 236
BstSCI CCNGG 3 cut(s) 655, 691, 864
BstSFI CTRYAG 1 cut(s) 1161
BstV1I GCAGC 9 cut(s) 124, 230, 310, 313, 316, 412, 1042, 1112, 1126
BstXI CCANNNNNNTGG 1 cut(s) 663
Bsu15I ATCGAT 1 cut(s) 525
BsuTUI ATCGAT 1 cut(s) 525
BtsCI GGATG 2 cut(s) 10, 200
BtsI GCAGTG 3 cut(s) 284, 306, 876
BtsIMutI CAGTG 4 cut(s) 201, 284, 306, 876
Cac8I GCNNGC 1 cut(s) 504
CciI TCATGA 1 cut(s) 787
ClaI ATCGAT 1 cut(s) 525
CseI GACGC 1 cut(s) 845
Csp6I GTAC 2 cut(s) 463, 1139
CviAII CATG 5 cut(s) 93, 233, 721, 788, 980
CviQI GTAC 2 cut(s) 463, 1139
DdeI CTNAG 2 cut(s) 560, 579
DpnI GATC 5 cut(s) 45, 162, 543, 786, 1147
DpnII GATC 5 cut(s) 43, 160, 541, 784, 1145
DraIII CACNNNGTG 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 1110
EarI CTCTTC 1 cut(s) 1110
Eco130I CCWWGG 1 cut(s) 474
Eco57I CTGAAG 2 cut(s) 298, 618
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 3 cut(s) 655, 691, 864
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 5 cut(s) 96, 236, 724, 791, 983
FaqI GGGAC 1 cut(s) 212
FatI CATG 5 cut(s) 92, 232, 720, 787, 979
FauNDI CATATG 1 cut(s) 1050
FbaI TGATCA 2 cut(s) 43, 784
FblI GTMKAC 1 cut(s) 670
FokI GGATG 2 cut(s) 17, 207
FspBI CTAG 4 cut(s) 545, 624, 749, 1177
HgaI GACGC 1 cut(s) 845
Hin1II CATG 5 cut(s) 96, 236, 724, 791, 983
HinfI GANTC 4 cut(s) 147, 293, 440, 672
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 2 cut(s) 238, 671
Hpy188I TCNGA 3 cut(s) 165, 637, 924
Hpy188III TCNNGA 6 cut(s) 151, 468, 775, 788, 890, 1095
Hpy8I GTNNAC 2 cut(s) 238, 671
Hpy99I CGWCG 1 cut(s) 839
HpyAV CCTTC 5 cut(s) 218, 322, 642, 752, 828
HpyCH4III ACNGT 2 cut(s) 205, 831
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 329, 590, 1064
HpyF3I CTNAG 2 cut(s) 560, 579
Hsp92II CATG 5 cut(s) 96, 236, 724, 791, 983
Ksp22I TGATCA 2 cut(s) 43, 784
Kzo9I GATC 5 cut(s) 43, 160, 541, 784, 1145
LguI GCTCTTC 1 cut(s) 1110
LmnI GCTCC 3 cut(s) 224, 995, 1097
Lsp1109I GCAGC 9 cut(s) 124, 230, 310, 313, 316, 412, 1042, 1112, 1126
LweI GCATC 2 cut(s) 546, 958
MaeI CTAG 4 cut(s) 545, 624, 749, 1177
MaeIII GTNAC 2 cut(s) 563, 1009
MalI GATC 5 cut(s) 45, 162, 543, 786, 1147
MbiI CCGCTC 1 cut(s) 103
MboI GATC 5 cut(s) 43, 160, 541, 784, 1145
MboII GAAGA 5 cut(s) 376, 379, 565, 958, 1097
MfeI CAATTG 1 cut(s) 127
MlyI GAGTC 2 cut(s) 287, 666
MmeI TCCRAC 2 cut(s) 465, 677
MnlI CCTC 7 cut(s) 151, 159, 185, 386, 481, 1080, 1129
MroXI GAANNNNTTC 2 cut(s) 631, 741
MseI TTAA 4 cut(s) 29, 87, 879, 896
MslI CAYNNNNRTG 1 cut(s) 792
MspR9I CCNGG 3 cut(s) 657, 693, 866
MunI CAATTG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 3 cut(s) 657, 693, 866
MwoI GCNNNNNNNGC 4 cut(s) 224, 329, 590, 1064
NdeI CATATG 1 cut(s) 1050
NdeII GATC 5 cut(s) 43, 160, 541, 784, 1145
NlaIII CATG 5 cut(s) 96, 236, 724, 791, 983
NlaIV GGNNCC 2 cut(s) 472, 991
NmuCI GTSAC 2 cut(s) 563, 1009
NspI RCATGY 2 cut(s) 96, 236
PagI TCATGA 1 cut(s) 787
PciI ACATGT 2 cut(s) 92, 232
PciSI GCTCTTC 1 cut(s) 1110
PctI GAATGC 1 cut(s) 633
PdmI GAANNNNTTC 2 cut(s) 631, 741
PfeI GAWTC 2 cut(s) 147, 440
PflFI GACNNNGTC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 655
PleI GAGTC 2 cut(s) 287, 666
PpsI GAGTC 2 cut(s) 287, 666
PscI ACATGT 2 cut(s) 92, 232
PsiI TTATAA 1 cut(s) 59
Psp6I CCWGG 3 cut(s) 655, 691, 864
PspGI CCWGG 3 cut(s) 655, 691, 864
PspN4I GGNNCC 2 cut(s) 472, 991
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 464, 1140
RsaNI GTAC 2 cut(s) 463, 1139
RseI CAYNNNNRTG 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 4 cut(s) 29, 87, 879, 896
Sau3AI GATC 5 cut(s) 43, 160, 541, 784, 1145
SchI GAGTC 2 cut(s) 287, 666
ScrFI CCNGG 3 cut(s) 657, 693, 866
SfaNI GCATC 2 cut(s) 546, 958
SfcI CTRYAG 1 cut(s) 1161
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
SpeI ACTAGT 1 cut(s) 748
SsiI CCGC 2 cut(s) 101, 396
SspMI CTAG 4 cut(s) 545, 624, 749, 1177
StyD4I CCNGG 3 cut(s) 655, 691, 864
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 205, 831
TaqI TCGA 6 cut(s) 258, 301, 391, 525, 834, 1144
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 2 cut(s) 147, 440
Tru1I TTAA 4 cut(s) 29, 87, 879, 896
Tru9I TTAA 4 cut(s) 29, 87, 879, 896
TscAI CASTG 4 cut(s) 208, 291, 313, 876
TseFI GTSAC 2 cut(s) 563, 1009
TseI GCWGC 9 cut(s) 137, 218, 323, 326, 329, 425, 1055, 1100, 1114
Tsp45I GTSAC 2 cut(s) 563, 1009
TspDTI ATGAA 5 cut(s) 377, 566, 737, 750, 1161
TspRI CASTG 4 cut(s) 208, 291, 313, 876
Tth111I GACNNNGTC 1 cut(s) 203
XapI RAATTY 2 cut(s) 376, 638
XceI RCATGY 2 cut(s) 96, 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 670
XmnI GAANNNNTTC 2 cut(s) 631, 741
XspI CTAG 4 cut(s) 545, 624, 749, 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.