Rmu_sc0003743.1_g000017

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003743.1
OG0000157
Physical Location & Seq
Forward (+)
75066 .. 76410
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003743.1_g000017.1.cds

Sequence Viewer

Length: 843 bp
atggcaggaaacgatgtagtctcagcaaaagatatgttccaaccctgcaacgtggaggaagaaacacatgatgagacaaaaatctcgatctctatccctgaaatagacgacgaacatgaggactgggtgtacgaaagacgaaggtatatcaaaagatctgtgcctctatacaattcgtgtctgaaaggtgactggaaagaggctaagagaattataggcgaagatcccaatattatacgtgccagtatcacacacgggtgccagaaacctcttcatgttgcggcaggagcaggacatgttctttttgtggagcagttgatgaaatatataaccgaagaagatttactctctaaagatgcaaagggcaatacagccttttgctttgctgttgcagttgggtctgtacccatcgctaagcttatgatcagaaagaacccacaattgcctcaaattcgcggtggggaaggaatgacaacgctttatatggccactttgtttggacacgaagagatggcgtggtttctgtatcctaagcttatagaagatattgatgtacgggaccgactcgggatatttttcagttgcatccacaatgatttatatgaaatagccttgaaaatgcttcatgactaccgagagcttgctgtggctcgtgatatgaatggtgaaacagcggtacatttgttggcacgcaagccttcaatattttccaacaaaagacctggaatatggaaatgcttcgttcagtctctggcacataggcttgtaagtgaagcctatgaatctgctgatcaggtagaatggtatgatgttgttcctgatttgctaagagatgtggcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

280

Amino Acids

31.96

Weight (kDa)

5.51

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 258
AccII CGCG 1 cut(s) 456
AciI CCGC 3 cut(s) 281, 456, 674
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 1 cut(s) 450
AfaI GTAC 4 cut(s) 131, 405, 555, 678
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 2 cut(s) 616, 702
AjnI CCWGG 1 cut(s) 721
AleI CACNNNNGTG 1 cut(s) 256
AluBI AGCT 3 cut(s) 418, 535, 640
AluI AGCT 3 cut(s) 418, 535, 640
Alw26I GTCTC 3 cut(s) 25, 68, 753
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 751
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 737
AspS9I GGNCC 1 cut(s) 559
AsuHPI GGTGA 2 cut(s) 200, 677
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 1 cut(s) 559
BaeI ACNNNNGTAYC 2 cut(s) 668, 701
BalI TGGCCA 1 cut(s) 488
BanI GGYRCC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 327, 359
BauI CACGAG 1 cut(s) 651
BccI CCATC 2 cut(s) 416, 505
BciT130I CCWGG 1 cut(s) 723
BciVI GTATCC 1 cut(s) 537
BclI TGATCA 2 cut(s) 423, 790
BcoDI GTCTC 3 cut(s) 25, 68, 753
BfuI GTATCC 1 cut(s) 537
BglII AGATCT 1 cut(s) 155
BisI GCNGC 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 723
Bme18I GGWCC 1 cut(s) 559
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 2 cut(s) 260, 560
BmrFI CCNGG 1 cut(s) 723
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 346, 594
BmuI ACTGGG 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 531
Bpu1102I GCTNAGC 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 128, 197, 243
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 1 cut(s) 723
BseGI GGATG 1 cut(s) 585
BseJI GATNNNNATC 1 cut(s) 92
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 3 cut(s) 128, 197, 243
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 1 cut(s) 488
BshNI GGYRCC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 566
BslFI GGGAC 1 cut(s) 572
BsmAI GTCTC 3 cut(s) 25, 68, 753
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 566
Bsp143I GATC 5 cut(s) 87, 155, 223, 423, 790
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 3 cut(s) 281, 456, 674
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 260, 560
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 258
BsrI ACTGG 3 cut(s) 128, 197, 243
BssMI GATC 5 cut(s) 87, 155, 223, 423, 790
BssSI CACGAG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 723
Bst6I CTCTTC 2 cut(s) 276, 501
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 642, 691, 695
BstDEI CTNAG 5 cut(s) 22, 204, 414, 531, 827
BstF5I GGATG 1 cut(s) 585
BstFNI CGCG 1 cut(s) 456
BstKTI GATC 5 cut(s) 90, 158, 226, 426, 793
BstMAI GTCTC 3 cut(s) 25, 68, 753
BstMBI GATC 5 cut(s) 87, 155, 223, 423, 790
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 721
BstUI CGCG 1 cut(s) 456
BstX2I RGATCY 2 cut(s) 155, 223
BstYI RGATCY 2 cut(s) 155, 223
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 488
BtgZI GCGATG 1 cut(s) 394
BtsCI GGATG 1 cut(s) 585
Cac8I GCNNGC 3 cut(s) 642, 691, 695
CaiI CAGNNNCTG 1 cut(s) 751
CciI TCATGA 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 559
Csp6I GTAC 4 cut(s) 130, 404, 554, 677
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 5 cut(s) 68, 116, 275, 296, 626
CviQI GTAC 4 cut(s) 130, 404, 554, 677
DdeI CTNAG 5 cut(s) 22, 204, 414, 531, 827
DpnI GATC 5 cut(s) 89, 157, 225, 425, 792
DpnII GATC 5 cut(s) 87, 155, 223, 423, 790
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 2 cut(s) 276, 501
EarI CTCTTC 2 cut(s) 276, 501
Eco47I GGWCC 1 cut(s) 559
Eco88I CYCGRG 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 721
FaeI CATG 5 cut(s) 71, 119, 278, 299, 629
FaqI GGGAC 1 cut(s) 572
FatI CATG 5 cut(s) 67, 115, 274, 295, 625
FbaI TGATCA 2 cut(s) 423, 790
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 488
Hin1II CATG 5 cut(s) 71, 119, 278, 299, 629
HindIII AAGCTT 2 cut(s) 416, 533
HinfI GANTC 2 cut(s) 564, 782
HphI GGTGA 2 cut(s) 200, 677
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 183, 428
Hpy188III TCNNGA 5 cut(s) 85, 568, 626, 653, 818
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 135, 458, 708
HpyCH4IV ACGT 2 cut(s) 51, 238
HpyCH4V TGCA 4 cut(s) 48, 359, 392, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 5 cut(s) 22, 204, 414, 531, 827
HpySE526I ACGT 2 cut(s) 51, 238
Hsp92II CATG 5 cut(s) 71, 119, 278, 299, 629
Ksp22I TGATCA 2 cut(s) 423, 790
Kzo9I GATC 5 cut(s) 87, 155, 223, 423, 790
LmnI GCTCC 2 cut(s) 287, 310
LweI GCATC 2 cut(s) 346, 594
MaeII ACGT 2 cut(s) 51, 238
MaeIII GTNAC 1 cut(s) 188
MalI GATC 5 cut(s) 89, 157, 225, 425, 792
MboI GATC 5 cut(s) 87, 155, 223, 423, 790
MboII GAAGA 7 cut(s) 71, 233, 263, 347, 350, 518, 554
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 2 cut(s) 155, 223
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 4 cut(s) 172, 210, 440, 450
MluNI TGGCCA 1 cut(s) 488
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 2 cut(s) 64, 735
MnlI CCTC 6 cut(s) 49, 112, 174, 193, 279, 456
Mox20I TGGCCA 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 737
MscI TGGCCA 1 cut(s) 488
MseI TTAA 1 cut(s) 841
MslI CAYNNNNRTG 1 cut(s) 256
Msp20I TGGCCA 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 674
MspR9I CCNGG 1 cut(s) 723
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 723
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 5 cut(s) 87, 155, 223, 423, 790
NlaIII CATG 5 cut(s) 71, 119, 278, 299, 629
NlaIV GGNNCC 2 cut(s) 260, 560
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 256
PagI TCATGA 1 cut(s) 625
PciI ACATGT 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 1 cut(s) 782
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
Ppu21I YACGTR 1 cut(s) 239
PscI ACATGT 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 2 cut(s) 260, 560
PspPI GGNCC 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 751
PsuI RGATCY 2 cut(s) 155, 223
RsaI GTAC 4 cut(s) 131, 405, 555, 678
RsaNI GTAC 4 cut(s) 130, 404, 554, 677
RseI CAYNNNNRTG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 841
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 5 cut(s) 87, 155, 223, 423, 790
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 1 cut(s) 723
SfaNI GCATC 2 cut(s) 346, 594
SinI GGWCC 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 256
Sse9I AATT 4 cut(s) 172, 210, 440, 450
SsiI CCGC 3 cut(s) 281, 456, 674
SspI AATATT 2 cut(s) 232, 705
StyD4I CCNGG 1 cut(s) 721
TaiI ACGT 2 cut(s) 54, 241
TaqI TCGA 1 cut(s) 86
TaqII GACCGA 1 cut(s) 576
TasI AATT 4 cut(s) 172, 210, 440, 450
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 782
Tru1I TTAA 1 cut(s) 841
Tru9I TTAA 1 cut(s) 841
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 6 cut(s) 263, 335, 614, 618, 674, 795
VpaK11BI GGWCC 1 cut(s) 559
XapI RAATTY 1 cut(s) 450
XceI RCATGY 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.