Rh5DG292200

Ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
36633928 .. 36634379
452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG292200.1

Sequence Viewer

Length: 333 bp
ATGTCTTTGCTAACAATTAGAGGCGGTAAAAATATGGCACCGGCCTATATAGCTGCTGTGTCAGGACAGTCCGAAATGTCGTGTTACCTGTACTACGAAAGTAAAAAGATGTTGGAGAAAAACGACCGAGAAAACTTGTTTTTTTCTTGCATCAACAATTGTCTGTACGATTTGGCCTTTCAGTTGCTAGATGCTGATAAAGCATTAGCGAAGGCACGCACTAGTTCGCAGAAAAATAAAACGGCCTTGCATATCCTGGCTCGAAGACCTTCAGCATTTCGTGGCAGCCAAAGTCCACCAATGTGGCCTAGACTCATTAACTCATGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.4

Weight (kDa)

9.33

Isoelectric Point (pI)

72.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 2 cut(s) 92, 167
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 1 cut(s) 255
AleI CACNNNNGTG 1 cut(s) 301
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AoxI GGCC 4 cut(s) 42, 174, 243, 305
ApeKI GCWGC 2 cut(s) 53, 285
Asp700I GAANNNNTTC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 40, 297
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 3 cut(s) 188, 222, 309
BisI GCNGC 2 cut(s) 54, 286
BlsI GCNGC 2 cut(s) 55, 287
Bme1390I CCNGG 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 2 cut(s) 159, 181
BpiI GAAGAC 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 40
BseBI CCWGG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 40, 297
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 44, 176, 245, 307
BshNI GGYRCC 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 41
BsnI GGCC 4 cut(s) 44, 176, 245, 307
BspACI CCGC 1 cut(s) 24
BspANI GGCC 4 cut(s) 44, 176, 245, 307
BspLI GGNNCC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 50, 200
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 40, 297
BstV2I GAAGAC 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 303
BsuRI GGCC 4 cut(s) 44, 176, 245, 307
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 40
Csp6I GTAC 2 cut(s) 91, 166
CviAII CATG 1 cut(s) 324
CviJI RGCY 7 cut(s) 44, 53, 176, 245, 260, 288, 307
CviKI_1 RGCY 7 cut(s) 44, 53, 176, 245, 260, 288, 307
CviQI GTAC 2 cut(s) 91, 166
Eco57I CTGAAG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 327
FaiI YATR 5 cut(s) 35, 48, 50, 252, 325
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 2 cut(s) 54, 286
Fsp4HI GCNGC 2 cut(s) 54, 286
FspBI CTAG 3 cut(s) 188, 222, 309
GluI GCNGC 2 cut(s) 54, 286
HaeIII GGCC 4 cut(s) 44, 176, 245, 307
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 327
HinfI GANTC 1 cut(s) 312
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 205, 279
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 150, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 200
Hsp92II CATG 1 cut(s) 327
LpnPI CCDG 5 cut(s) 48, 54, 101, 242, 269
Lsp1109I GCAGC 2 cut(s) 40, 297
LweI GCATC 2 cut(s) 159, 181
MaeI CTAG 3 cut(s) 188, 222, 309
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 1 cut(s) 276
MfeI CAATTG 1 cut(s) 157
MluCI AATT 2 cut(s) 15, 157
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 268
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 301, 328
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 50, 200
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 1 cut(s) 39
OliI CACNNNNGTG 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 268
PkrI GCNGC 2 cut(s) 55, 287
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 39
RsaI GTAC 2 cut(s) 92, 167
RsaNI GTAC 2 cut(s) 91, 166
RseI CAYNNNNRTG 2 cut(s) 301, 328
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 54, 286
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 257
SetI ASST 3 cut(s) 55, 90, 271
SfaNI GCATC 2 cut(s) 159, 181
SmiMI CAYNNNNRTG 2 cut(s) 301, 328
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 2 cut(s) 15, 157
SsiI CCGC 1 cut(s) 24
SspMI CTAG 3 cut(s) 188, 222, 309
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 262
TaqII GACCGA 1 cut(s) 141
TasI AATT 2 cut(s) 15, 157
TatI WGTACW 1 cut(s) 90
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 2 cut(s) 53, 285
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 3 cut(s) 188, 222, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.