Rw0G021580

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00997
OG0000157
Physical Location & Seq
Forward (+)
11727 .. 12209
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021580.1

Sequence Viewer

Length: 483 bp
ATGGCAAAACAAATCATAGACGAAGATGAGACCAACAGCATATTAGGTCTGAATATTACATATGGAAAGTACACCACACTTCATGTTGCAGCCGGAGCGCCACATGTTCACTTTGTGAATCAATTGCTGGAAATGATGGCCACGCGGCCAGAATACCGAAAATATCTCTTGCGACTAAAAGATGGAAGAGGTAATACTGCCTTCTGTTTAGCTGCGGCTGCTGGATCTATAGAAATTATTAAAACTATGATGGCACATGATCCAAGCCTGCAAGGAAGATCGGGTGGGGAAGGAAAGACGCCACTCTACATGGCTACTTTGTTTGGACATGAGCAAATGGCCTCGTACCTGTATGGGCTGTATGTTGAACCGGTGCCTCGAGGAGAAGATCTGCTTGGGGTATTTTTCAGTTGCATAAATACTGGTCTCTATGGTAAGTTTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

160

Amino Acids

17.53

Weight (kDa)

6.5

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 27 - 118 7.1e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 70 - 117 2.8e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 373
AccII CGCG 1 cut(s) 145
AciI CCGC 2 cut(s) 145, 215
AclWI GGATC 2 cut(s) 232, 254
AcoI YGGCCR 2 cut(s) 138, 146
AcyI GRCGYC 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 2 cut(s) 71, 347
AflIII ACRYGT 1 cut(s) 103
AgeI ACCGGT 1 cut(s) 370
AgsI TTSAA 1 cut(s) 368
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 23, 431
AlwI GGATC 2 cut(s) 232, 254
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 3 cut(s) 138, 146, 339
ApeKI GCWGC 3 cut(s) 89, 212, 218
AsiGI ACCGGT 1 cut(s) 370
AspLEI GCGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 378
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 373
BarI GAAGNNNNNNTAC 2 cut(s) 178, 210
BbvI GCAGC 3 cut(s) 101, 199, 205
BccI CCATC 3 cut(s) 130, 176, 244
BcoDI GTCTC 2 cut(s) 23, 431
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 101
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 90, 146, 213, 216, 219
BlsI GCNGC 5 cut(s) 91, 147, 214, 217, 220
BmeT110I CYCGRG 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 2 cut(s) 23, 431
BsaWI WCCGGW 1 cut(s) 370
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 427
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 3 cut(s) 101, 199, 205
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 140, 148, 341
BshNI GGYRCC 1 cut(s) 373
BshTI ACCGGT 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 2 cut(s) 93, 371
BsmAI GTCTC 2 cut(s) 23, 431
BsnI GGCC 3 cut(s) 140, 148, 341
Bso31I GGTCTC 2 cut(s) 23, 431
BsoBI CYCGRG 1 cut(s) 378
Bsp143I GATC 4 cut(s) 224, 259, 278, 388
BspACI CCGC 2 cut(s) 145, 215
BspANI GGCC 3 cut(s) 140, 148, 341
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 2 cut(s) 232, 254
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 2 cut(s) 23, 431
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 370
BssMI GATC 4 cut(s) 224, 259, 278, 388
BssNI GRCGYC 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 269
BstFNI CGCG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 4 cut(s) 227, 262, 281, 391
BstMAI GTCTC 2 cut(s) 23, 431
BstMBI GATC 4 cut(s) 224, 259, 278, 388
BstMWI GCNNNNNNNGC 2 cut(s) 95, 218
BstNSI RCATGY 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 101, 199, 205
BstX2I RGATCY 2 cut(s) 224, 388
BstYI RGATCY 2 cut(s) 224, 388
BsuRI GGCC 3 cut(s) 140, 148, 341
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 370
CseI GACGC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 70, 346
CspAI ACCGGT 1 cut(s) 370
CviAII CATG 5 cut(s) 83, 104, 257, 310, 329
CviJI RGCY 9 cut(s) 92, 140, 148, 212, 218, 267, 314, 341, 358
CviKI_1 RGCY 9 cut(s) 92, 140, 148, 212, 218, 267, 314, 341, 358
CviQI GTAC 2 cut(s) 70, 346
DpnI GATC 4 cut(s) 226, 261, 280, 390
DpnII GATC 4 cut(s) 224, 259, 278, 388
DraIII CACNNNGTG 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 138, 146
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco31I GGTCTC 2 cut(s) 23, 431
Eco88I CYCGRG 1 cut(s) 378
FaeI CATG 5 cut(s) 86, 107, 260, 313, 332
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 5 cut(s) 82, 103, 256, 309, 328
FauNDI CATATG 1 cut(s) 61
Fnu4HI GCNGC 5 cut(s) 90, 146, 213, 216, 219
Fsp4HI GCNGC 5 cut(s) 90, 146, 213, 216, 219
GlaI GCGC 1 cut(s) 99
GluI GCNGC 5 cut(s) 90, 146, 213, 216, 219
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 3 cut(s) 140, 148, 341
HapII CCGG 2 cut(s) 93, 371
HgaI GACGC 1 cut(s) 307
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 5 cut(s) 86, 107, 260, 313, 332
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 118
HpaII CCGG 2 cut(s) 93, 371
Hpy166II GTNNAC 2 cut(s) 72, 109
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 2 cut(s) 72, 109
HpyAV CCTTC 2 cut(s) 211, 284
HpyCH4V TGCA 3 cut(s) 89, 271, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 218
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 5 cut(s) 86, 107, 260, 313, 332
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 4 cut(s) 224, 259, 278, 388
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 106, 113, 162, 207, 281, 362, 384, 408
Lsp1109I GCAGC 3 cut(s) 101, 199, 205
MalI GATC 4 cut(s) 226, 261, 280, 390
MboI GATC 4 cut(s) 224, 259, 278, 388
MboII GAAGA 4 cut(s) 35, 198, 288, 398
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 2 cut(s) 224, 388
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 122, 234
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 4 cut(s) 182, 352, 374, 387
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 2 cut(s) 240, 441
Msp20I TGGCCA 1 cut(s) 140
MspI CCGG 2 cut(s) 93, 371
MunI CAATTG 1 cut(s) 122
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 95, 218
NdeI CATATG 1 cut(s) 61
NdeII GATC 4 cut(s) 224, 259, 278, 388
NlaIII CATG 5 cut(s) 86, 107, 260, 313, 332
NlaIV GGNNCC 1 cut(s) 375
NspI RCATGY 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 378
PciI ACATGT 1 cut(s) 103
PfeI GAWTC 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 5 cut(s) 91, 147, 214, 217, 220
PscI ACATGT 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 375
PspXI VCTCGAGB 1 cut(s) 378
PsuI RGATCY 2 cut(s) 224, 388
RsaI GTAC 2 cut(s) 71, 347
RsaNI GTAC 2 cut(s) 70, 346
SaqAI TTAA 2 cut(s) 240, 441
SatI GCNGC 5 cut(s) 90, 146, 213, 216, 219
Sau3AI GATC 4 cut(s) 224, 259, 278, 388
SetI ASST 4 cut(s) 49, 193, 214, 351
SfcI CTRYAG 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 2 cut(s) 122, 234
SsiI CCGC 2 cut(s) 145, 215
SspI AATATT 1 cut(s) 55
TaqI TCGA 1 cut(s) 379
TasI AATT 2 cut(s) 122, 234
TatI WGTACW 1 cut(s) 69
TauI GCSGC 2 cut(s) 148, 218
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 2 cut(s) 240, 441
Tru9I TTAA 2 cut(s) 240, 441
TseI GCWGC 3 cut(s) 89, 212, 218
TspDTI ATGAA 1 cut(s) 71
XceI RCATGY 1 cut(s) 107
XhoI CTCGAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.