RchiOBHm_Chr1g0316371

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000157
Physical Location & Seq
Forward (+)
3689320 .. 3690013
694 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54680

Sequence Viewer

Length: 591 bp
ATGAAATATATAACCGAAGAAGATTTACTCTCTAAAGATGCAAAGGGCAATACAGCCTTTTGCTTTGCTGTTGCAGTTGGGTCTGTACCCATCGCTAAGCTTATGATCAGAAAGAACCCACAACTGCCTCAAATTCGCGGTGGGGAAGGAATGACAACGCTTTATATGGCCACTTTGTTTGGACACGAAGAGATGGCGTGGTTTCTGTATCCTAAGCTTATAGAAGATATTGATGTACGGGACCGACTCGGGATATTTTTCAGTTGCATCCACAATGATTTATATGTAGAACTTGTTTTTTCTTTCCTGTTGGATCCTATGCGAAGTTTAAAGAGTGATGAAATTGGTTTCCTGTTGTTGCATGTTATCGTTCTTTGCTGTACAGAAATAGCCTTGAAAATGCTTCATGACTACCGAGAGCTTGCTGTGGCTCGTGATATGAATGGTGAAACAGCGGTACATTTGTTGGCACGCAAGCCTTCAATATTTTCCAACAAAAGACCTGGAATATGGAAATGCTTCGTTCAGTCTCGTAAGTTTCTTTGCTTAGTCAAGCTTCATTTATTTAGTCTTTCTCATAGATGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

196

Amino Acids

22.47

Weight (kDa)

8.46

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 8 - 81 9.1e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 138, 455
AclWI GGATC 2 cut(s) 308, 321
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 132
AfaI GTAC 4 cut(s) 87, 237, 382, 459
AgsI TTSAA 2 cut(s) 397, 483
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 4 cut(s) 100, 217, 421, 556
AluI AGCT 4 cut(s) 100, 217, 421, 556
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 308, 321
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 449, 482
BalI TGGCCA 1 cut(s) 170
BamHI GGATCC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BauI CACGAG 1 cut(s) 432
BccI CCATC 2 cut(s) 98, 187
BciT130I CCWGG 1 cut(s) 504
BciVI GTATCC 1 cut(s) 219
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 534
BfuI GTATCC 1 cut(s) 219
BlpI GCTNAGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 242, 315
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 3 cut(s) 28, 276, 572
Bpu10I CCTNAGC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 248
Bsp1407I TGTACA 1 cut(s) 380
Bsp143I GATC 2 cut(s) 105, 313
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 2 cut(s) 138, 455
BspANI GGCC 1 cut(s) 170
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 242, 315
BspPI GGATC 2 cut(s) 308, 321
BsrGI TGTACA 1 cut(s) 380
BssMI GATC 2 cut(s) 105, 313
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 504
Bst6I CTCTTC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 423, 472, 476
BstDEI CTNAG 3 cut(s) 96, 213, 547
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 2 cut(s) 108, 316
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 2 cut(s) 105, 313
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 502
BstUI CGCG 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 170
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 3 cut(s) 423, 472, 476
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 4 cut(s) 86, 236, 381, 458
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 2 cut(s) 362, 407
CviJI RGCY 9 cut(s) 56, 100, 170, 217, 392, 421, 431, 478, 556
CviKI_1 RGCY 9 cut(s) 56, 100, 170, 217, 392, 421, 431, 478, 556
CviQI GTAC 4 cut(s) 86, 236, 381, 458
DdeI CTNAG 3 cut(s) 96, 213, 547
DpnI GATC 2 cut(s) 107, 315
DpnII GATC 2 cut(s) 105, 313
DraI TTTAAA 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 502
EcoT22I ATGCAT 1 cut(s) 587
FaeI CATG 2 cut(s) 365, 410
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 361, 406
FbaI TGATCA 1 cut(s) 105
FokI GGATG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 2 cut(s) 365, 410
HindIII AAGCTT 3 cut(s) 98, 215, 554
HinfI GANTC 1 cut(s) 246
HphI GGTGA 1 cut(s) 458
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 250, 407, 434
HpyAV CCTTC 2 cut(s) 140, 489
HpyCH4V TGCA 5 cut(s) 41, 74, 267, 361, 585
HpyF3I CTNAG 3 cut(s) 96, 213, 547
Hsp92II CATG 2 cut(s) 365, 410
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 105, 313
LpnPI CCDG 4 cut(s) 320, 365, 489, 516
LweI GCATC 3 cut(s) 28, 276, 572
MalI GATC 2 cut(s) 107, 315
MboI GATC 2 cut(s) 105, 313
MboII GAAGA 4 cut(s) 29, 32, 200, 236
MflI RGATCY 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 2 cut(s) 132, 342
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 2 cut(s) 291, 516
MnlI CCTC 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 1 cut(s) 587
MroXI GAANNNNTTC 1 cut(s) 518
MscI TGGCCA 1 cut(s) 170
MseI TTAA 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 504
MvnI CGCG 1 cut(s) 138
NdeII GATC 2 cut(s) 105, 313
NlaIII CATG 2 cut(s) 365, 410
NlaIV GGNNCC 2 cut(s) 242, 315
NsiI ATGCAT 1 cut(s) 587
NspI RCATGY 1 cut(s) 365
PagI TCATGA 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 518
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 2 cut(s) 242, 315
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 4 cut(s) 87, 237, 382, 459
RsaNI GTAC 4 cut(s) 86, 236, 381, 458
SaqAI TTAA 1 cut(s) 329
Sau3AI GATC 2 cut(s) 105, 313
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 504
SetI ASST 5 cut(s) 102, 219, 423, 505, 558
SfaNI GCATC 3 cut(s) 28, 276, 572
SinI GGWCC 1 cut(s) 241
Sse9I AATT 2 cut(s) 132, 342
SsiI CCGC 2 cut(s) 138, 455
SspI AATATT 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 502
TaqII GACCGA 1 cut(s) 258
TasI AATT 2 cut(s) 132, 342
TatI WGTACW 1 cut(s) 380
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TspDTI ATGAA 5 cut(s) 17, 354, 395, 455, 548
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.