Rmu_co8397575.1_g000001

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8397575.1
OG0000157
Physical Location & Seq
Forward (+)
97 .. 1233
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8397575.1_g000001.1.cds

Sequence Viewer

Length: 792 bp
atgatggacaaagaacacttggtactgcaagacataaatggaaacactgccttgtgcattgccgctgcggctggatctctagacattgtccagattttgatagaccataataattctttgctgacaattcgaggtggtaaagatatggcaccaccctacatggctgctgtattaggacagtcggaaatggcatgttacctgtacaacaaaagtgaaaagatgttggagataaccgaccgagaaaacttgtttttttcttccattaacaacggtctgtacgatttggcctttcagttgctagttgctgataaagcattagcgaaggcacgtactagttcgcagaaaaataaaacggccttgcatatcttggctcgaagaccttcagcatttggtggcagccaaagtccacgaatgtggactagactcattaagtcatgtttgaagtttgcatgcaaaacaaagttgaaagaagctaatggagcccttcaactagtctgccgcctctgggaagaaatcttgagagacgagcatgataacgtgatgaggctgatcaaatttccaacaaacttgctatttgacgcagcagaattagggaattatgagttcctagcggcacttatgagctcttatcctgagttagtttgggaaactgatgaaaataatcgaactataatccatgtcgcagttttgcatcgtcacgcaggtatcttcaatctagtgcatgagataggttcaatcagggatgtcatagtgacatataaggatcatcaggcgagagttagtatggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

263

Amino Acids

29.58

Weight (kDa)

7.12

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 4 cut(s) 63, 68, 499, 611
AclWI GGATC 2 cut(s) 82, 771
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 4 cut(s) 24, 203, 278, 331
AfiI CCNNNNNNNGG 1 cut(s) 505
AgsI TTSAA 5 cut(s) 442, 466, 488, 712, 735
AhlI ACTAGT 2 cut(s) 332, 490
AleI CACNNNNGTG 1 cut(s) 412
AluBI AGCT 2 cut(s) 473, 624
AluI AGCT 2 cut(s) 473, 624
Alw21I GWGCWC 1 cut(s) 626
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 2 cut(s) 82, 771
AoxI GGCC 2 cut(s) 285, 354
ApeKI GCWGC 4 cut(s) 65, 164, 396, 581
ApoI RAATTY 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 379
BaeI ACNNNNGTAYC 2 cut(s) 688, 721
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 2 cut(s) 484, 626
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 626
BbvI GCAGC 4 cut(s) 52, 151, 408, 593
BceAI ACGGC 1 cut(s) 369
BclI TGATCA 1 cut(s) 549
BcoDI GTCTC 1 cut(s) 516
BcuI ACTAGT 2 cut(s) 332, 490
BfaI CTAG 7 cut(s) 80, 299, 333, 420, 491, 608, 716
BfuAI ACCTGC 1 cut(s) 692
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 8 cut(s) 63, 66, 69, 165, 397, 499, 582, 612
BlsI GCNGC 8 cut(s) 64, 67, 70, 166, 398, 500, 583, 613
BmiI GGNNCC 2 cut(s) 150, 481
BmsI GCATC 1 cut(s) 700
BpiI GAAGAC 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 57
BseGI GGATG 1 cut(s) 748
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 624
BseXI GCAGC 4 cut(s) 52, 151, 408, 593
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 287, 356
BshNI GGYRCC 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 626
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 1 cut(s) 516
BsmBI CGTCTC 1 cut(s) 516
BsnI GGCC 2 cut(s) 287, 356
Bsp1286I GDGCHC 2 cut(s) 484, 626
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 74, 549, 763
BspACI CCGC 4 cut(s) 63, 68, 499, 611
BspANI GGCC 2 cut(s) 287, 356
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 150, 481
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 2 cut(s) 82, 771
BspT107I GGYRCC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 201
BssMI GATC 3 cut(s) 74, 549, 763
Bst4CI ACNGT 2 cut(s) 180, 272
BstAUI TGTACA 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 748
BstKTI GATC 3 cut(s) 77, 552, 766
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 3 cut(s) 74, 549, 763
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 68, 311, 479
BstNSI RCATGY 2 cut(s) 195, 453
BstV1I GCAGC 4 cut(s) 52, 151, 408, 593
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 2 cut(s) 287, 356
BtsCI GGATG 1 cut(s) 748
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 692
Cac8I GCNNGC 1 cut(s) 451
CseI GACGC 1 cut(s) 587
Csp6I GTAC 4 cut(s) 23, 202, 277, 330
CviAII CATG 7 cut(s) 160, 192, 435, 450, 530, 677, 722
CviQI GTAC 4 cut(s) 23, 202, 277, 330
DdeI CTNAG 1 cut(s) 633
DpnI GATC 3 cut(s) 76, 551, 765
DpnII GATC 3 cut(s) 74, 549, 763
Ecl136II GAGCTC 1 cut(s) 624
Eco24I GRGCYC 2 cut(s) 484, 626
Eco53kI GAGCTC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 624
EcoT38I GRGCYC 2 cut(s) 484, 626
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 7 cut(s) 163, 195, 438, 453, 533, 680, 725
FatI CATG 7 cut(s) 159, 191, 434, 449, 529, 676, 721
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 8 cut(s) 63, 66, 69, 165, 397, 499, 582, 612
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 2 cut(s) 484, 626
Fsp4HI GCNGC 8 cut(s) 63, 66, 69, 165, 397, 499, 582, 612
FspBI CTAG 7 cut(s) 80, 299, 333, 420, 491, 608, 716
GluI GCNGC 8 cut(s) 63, 66, 69, 165, 397, 499, 582, 612
HaeIII GGCC 2 cut(s) 287, 356
HgaI GACGC 1 cut(s) 587
Hin1II CATG 7 cut(s) 163, 195, 438, 453, 533, 680, 725
HinfI GANTC 1 cut(s) 423
Hpy166II GTNNAC 2 cut(s) 407, 417
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 4 cut(s) 80, 91, 517, 632
Hpy8I GTNNAC 2 cut(s) 407, 417
HpyAV CCTTC 3 cut(s) 316, 390, 494
HpyCH4III ACNGT 2 cut(s) 180, 272
HpyCH4IV ACGT 2 cut(s) 328, 537
HpyCH4V TGCA 7 cut(s) 28, 57, 361, 449, 453, 691, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 311, 479
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 2 cut(s) 328, 537
Hsp92II CATG 7 cut(s) 163, 195, 438, 453, 533, 680, 725
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 3 cut(s) 74, 549, 763
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 8 cut(s) 57, 104, 212, 490, 645, 687, 724, 755
Lsp1109I GCAGC 4 cut(s) 52, 151, 408, 593
LweI GCATC 1 cut(s) 700
MaeI CTAG 7 cut(s) 80, 299, 333, 420, 491, 608, 716
MaeII ACGT 2 cut(s) 328, 537
MaeIII GTNAC 3 cut(s) 194, 695, 751
MalI GATC 3 cut(s) 76, 551, 765
MboI GATC 3 cut(s) 74, 549, 763
MboII GAAGA 4 cut(s) 249, 387, 521, 700
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 484, 626
MluCI AATT 5 cut(s) 112, 126, 554, 587, 595
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 3 cut(s) 162, 204, 584
MnlI CCTC 3 cut(s) 125, 512, 537
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 2 cut(s) 264, 429
MslI CAYNNNNRTG 1 cut(s) 412
MspA1I CMGCKG 1 cut(s) 65
MwoI GCNNNNNNNGC 3 cut(s) 68, 311, 479
NdeII GATC 3 cut(s) 74, 549, 763
NlaIII CATG 7 cut(s) 163, 195, 438, 453, 533, 680, 725
NlaIV GGNNCC 2 cut(s) 150, 481
NmuCI GTSAC 2 cut(s) 695, 751
NspI RCATGY 2 cut(s) 195, 453
OliI CACNNNNGTG 1 cut(s) 412
PaeI GCATGC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 379
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 8 cut(s) 64, 67, 70, 166, 398, 500, 583, 613
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
Ppu21I YACGTR 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 626
PspN4I GGNNCC 2 cut(s) 150, 481
PsrI GAACNNNNNNTAC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 74
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 4 cut(s) 24, 203, 278, 331
RsaNI GTAC 4 cut(s) 23, 202, 277, 330
RseI CAYNNNNRTG 1 cut(s) 412
SacI GAGCTC 1 cut(s) 626
SaqAI TTAA 2 cut(s) 264, 429
SatI GCNGC 8 cut(s) 63, 66, 69, 165, 397, 499, 582, 612
Sau3AI GATC 3 cut(s) 74, 549, 763
SchI GAGTC 1 cut(s) 417
SduI GDGCHC 2 cut(s) 484, 626
SetI ASST 9 cut(s) 136, 201, 331, 382, 475, 540, 626, 706, 733
SfaNI GCATC 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 412
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
SpeI ACTAGT 2 cut(s) 332, 490
SphI GCATGC 1 cut(s) 453
Sse9I AATT 5 cut(s) 112, 126, 554, 587, 595
SsiI CCGC 4 cut(s) 63, 68, 499, 611
SspMI CTAG 7 cut(s) 80, 299, 333, 420, 491, 608, 716
SstI GAGCTC 1 cut(s) 626
TaaI ACNGT 2 cut(s) 180, 272
TaiI ACGT 2 cut(s) 331, 540
TaqI TCGA 3 cut(s) 130, 373, 664
TaqII GACCGA 1 cut(s) 252
TasI AATT 5 cut(s) 112, 126, 554, 587, 595
TatI WGTACW 1 cut(s) 201
TauI GCSGC 4 cut(s) 65, 71, 501, 614
Tru1I TTAA 2 cut(s) 264, 429
Tru9I TTAA 2 cut(s) 264, 429
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 2 cut(s) 695, 751
TseI GCWGC 4 cut(s) 65, 164, 396, 581
Tsp45I GTSAC 2 cut(s) 695, 751
TspDTI ATGAA 1 cut(s) 669
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 86
XapI RAATTY 1 cut(s) 554
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 2 cut(s) 195, 453
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 7 cut(s) 80, 299, 333, 420, 491, 608, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.