Rh5DG326900

Ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
42943690 .. 42944070
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG326900.1

Sequence Viewer

Length: 381 bp
ATGAGACTAATCAAACATCCTTCAAGATTACTGTTCGACGCTACAAAATTAGGAAATTATGAGTTCCTGGCAGTGCTCATTAACTCTTATCCTGACTTAATATGGCAACTTGATGACAAAAATCGGAGTATAATCCATGTTGCTGTTTTGCATCGTCATGCAAGTATCTTCAATTTAGTGCATGAGATAGGTTCCATCAAGGATATCATAGTGACATTTACTGATGATGAAGAGAGTAATAACATTTTACATATGGCTGCAAAATTAGCACCTCCAAATCAACTCAACCTTGTATCAGGAGCAGCCCTTCAAATGCAGCGAGAGTTGGTATGGTTTGAGGTACTTCGATCTCCCACTAAGCCTACAATTATTTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.41

Weight (kDa)

6.58

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 342
AgsI TTSAA 3 cut(s) 24, 172, 311
AjnI CCWGG 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 257, 302, 316
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 244, 314, 328
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 1 cut(s) 379
BisI GCNGC 3 cut(s) 258, 303, 317
BlsI GCNGC 3 cut(s) 259, 304, 318
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 160
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 244, 314, 328
BsiHKAI GWGCWC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 193
BssMI GATC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 244, 314, 328
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 341
CviAII CATG 3 cut(s) 137, 158, 182
CviJI RGCY 3 cut(s) 257, 305, 361
CviKI_1 RGCY 3 cut(s) 257, 305, 361
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 66
EcoRV GATATC 1 cut(s) 205
FaeI CATG 3 cut(s) 140, 161, 185
FatI CATG 3 cut(s) 136, 157, 181
FauNDI CATATG 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 258, 303, 317
FokI GGATG 1 cut(s) 3
Fsp4HI GCNGC 3 cut(s) 258, 303, 317
FspBI CTAG 1 cut(s) 379
GluI GCNGC 3 cut(s) 258, 303, 317
HgaI GACGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 140, 161, 185
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 3 cut(s) 24, 92, 297
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 30, 317
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 5 cut(s) 151, 161, 181, 260, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 3 cut(s) 140, 161, 185
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 4 cut(s) 53, 80, 105, 282
Lsp1109I GCAGC 3 cut(s) 244, 314, 328
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 2 cut(s) 160, 242
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 5 cut(s) 47, 55, 172, 263, 366
MnlI CCTC 2 cut(s) 282, 331
MseI TTAA 2 cut(s) 81, 98
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeI CATATG 1 cut(s) 252
NdeII GATC 1 cut(s) 347
NlaIII CATG 3 cut(s) 140, 161, 185
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 211
PkrI GCNGC 3 cut(s) 259, 304, 318
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 193
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 81, 98
SatI GCNGC 3 cut(s) 258, 303, 317
Sau3AI GATC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 78
SetI ASST 4 cut(s) 193, 274, 291, 342
SfaNI GCATC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 5 cut(s) 47, 55, 172, 263, 366
SspMI CTAG 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 36, 346
TasI AATT 5 cut(s) 47, 55, 172, 263, 366
Tru1I TTAA 2 cut(s) 81, 98
Tru9I TTAA 2 cut(s) 81, 98
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 3 cut(s) 257, 302, 316
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 243, 363
TspRI CASTG 1 cut(s) 78
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.