MD03G1146800.v1.1

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000157
Physical Location & Seq
Reverse (-)
16102484 .. 16103101
618 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1146800.v1.1.491

Sequence Viewer

Length: 618 bp
ATGTGGCAGGAAGTCAAGAAGATTGTGCAATCTCCCTTTATAGATATGAAATATAAGCAAGGAAAAACACTTCGAGAATTATTCACTAGCGAGCATGAGGATTTATTGCACGAGGGAGAATTATGGATGAAGGACACTGCAAATCCGTGCATGCTTATTTCAACTATTATCGCCACTGTTGTGTTTTCAGCTGCATTTAGCATCCCAGGAGGTATAGCTGATAATAAGGGAACACCAAATTTCATAAAGGAGACATTTTTAATCTTCGCTATATCTGATGGAGTAGCACTCTTTTCCTTCTCAACTACAATTCTCATGTTCTTGTCCATCCTCAAGTTGCGGTATGCTGAAAACGATTTTCTTAAATCCTTACTGTTGAAGTTGATGATCGGACTCACATCACTCTTCGTTTCAATAACATCCATGATAGAAGTTTTCAGCACAGCCTTCTATTTATCTTGTCACTATGGATTAAGATGGGTTCCGGATGTTATATTCATATTTGCATTTGTTCTAGTTGTTTTGTTTGCATTCTTGAAGTATCCTCTCTTGTCTGACATATTATTTTCGATATATTGTTCAAGTCTTCTGTTTCAGCCAAGGAGAGATATGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

206

Amino Acids

23.42

Weight (kDa)

6.29

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 42 - 152 2.1e-19 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 238
AgsI TTSAA 5 cut(s) 162, 379, 414, 538, 582
AjnI CCWGG 1 cut(s) 205
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 2 cut(s) 191, 218
AluI AGCT 2 cut(s) 191, 218
Alw26I GTCTC 1 cut(s) 245
Aor13HI TCCGGA 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 238
BauI CACGAG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 272, 335, 471
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 2 cut(s) 87, 515
BfuI GTATCC 1 cut(s) 552
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 578
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 205, 599
BsaWI WCCGGW 1 cut(s) 484
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 205, 599
BseGI GGATG 5 cut(s) 132, 201, 327, 419, 493
BseXI GCAGC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 530
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 1 cut(s) 387
BspACI CCGC 1 cut(s) 340
BspEI TCCGGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 483
BssECI CCNNGG 2 cut(s) 205, 599
BssMI GATC 1 cut(s) 387
BssSI CACGAG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 599
Bst2BI CACGAG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 178, 375
Bst6I CTCTTC 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 92, 152
BstF5I GGATG 5 cut(s) 132, 201, 327, 419, 493
BstKTI GATC 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 387
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 578
BsuI GTATCC 1 cut(s) 552
BtsCI GGATG 5 cut(s) 132, 201, 327, 419, 493
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 135, 174
Cac8I GCNNGC 2 cut(s) 92, 152
CviAII CATG 4 cut(s) 95, 151, 316, 424
CviJI RGCY 4 cut(s) 191, 218, 446, 598
CviKI_1 RGCY 4 cut(s) 191, 218, 446, 598
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 599
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 599
ErhI CCWWGG 1 cut(s) 599
FaeI CATG 4 cut(s) 98, 154, 319, 427
FatI CATG 4 cut(s) 94, 150, 315, 423
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 5 cut(s) 139, 188, 314, 406, 500
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 87, 515
GluI GCNGC 1 cut(s) 192
HapII CCGG 1 cut(s) 485
Hin1II CATG 4 cut(s) 98, 154, 319, 427
HinfI GANTC 1 cut(s) 393
HpaII CCGG 1 cut(s) 485
Hpy188I TCNGA 3 cut(s) 277, 392, 556
Hpy188III TCNNGA 4 cut(s) 16, 74, 485, 535
HpyAV CCTTC 3 cut(s) 124, 307, 457
HpyCH4III ACNGT 2 cut(s) 178, 375
HpyCH4V TGCA 7 cut(s) 28, 109, 140, 150, 194, 506, 530
Hsp92II CATG 4 cut(s) 98, 154, 319, 427
Kpn2I TCCGGA 1 cut(s) 484
Kzo9I GATC 1 cut(s) 387
LpnPI CCDG 3 cut(s) 192, 219, 498
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 210
MaeI CTAG 2 cut(s) 87, 515
MaeIII GTNAC 1 cut(s) 461
MalI GATC 1 cut(s) 389
MboI GATC 1 cut(s) 387
MboII GAAGA 4 cut(s) 31, 256, 397, 578
MluCI AATT 4 cut(s) 77, 119, 238, 309
MlyI GAGTC 1 cut(s) 387
MnlI CCTC 5 cut(s) 91, 106, 203, 341, 555
MroI TCCGGA 1 cut(s) 484
MseI TTAA 4 cut(s) 260, 363, 473, 616
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 530
MvaI CCWGG 1 cut(s) 207
NdeII GATC 1 cut(s) 387
NlaIII CATG 4 cut(s) 98, 154, 319, 427
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 461
NspI RCATGY 1 cut(s) 154
OliI CACNNNNGTG 1 cut(s) 179
PaeI GCATGC 1 cut(s) 154
PctI GAATGC 1 cut(s) 530
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 483
PvuII CAGCTG 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 4 cut(s) 260, 363, 473, 616
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 1 cut(s) 387
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 207
SetI ASST 3 cut(s) 193, 214, 220
SfaNI GCATC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 154
Sse9I AATT 4 cut(s) 77, 119, 238, 309
SsiI CCGC 1 cut(s) 340
SspMI CTAG 2 cut(s) 87, 515
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 599
TaaI ACNGT 2 cut(s) 178, 375
TaqI TCGA 2 cut(s) 73, 569
TasI AATT 4 cut(s) 77, 119, 238, 309
Tru1I TTAA 4 cut(s) 260, 363, 473, 616
Tru9I TTAA 4 cut(s) 260, 363, 473, 616
TscAI CASTG 2 cut(s) 142, 181
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 4 cut(s) 62, 143, 232, 487
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 142, 181
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 154
XspI CTAG 2 cut(s) 87, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.