RchiOBHm_Chr5g0045291

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000157
Physical Location & Seq
Reverse (-)
41239125 .. 41239466
342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32340

Sequence Viewer

Length: 342 bp
ATGATCATTCCGAAAAAGCCAAACTTTTTGAAAAAGAAAGCCTTTCTAGACTTCACCATAGCTGACGAAGTAGCACTCTTTTCCTCTTCAACTGCAATGCTGATGTTCTTGTTTATCCTTACCTCCCGTTATGCTAAAAATGATTTCCTTAAGTCCTTGCCCTTGAAGTTGATGGCCAGACTCACTTGCCTCTTCATCTTTATAGCTTCTATGATGATGGCTTTCAGCACTGCCTTCTATCTATCTTGTCTATGGATCAAAGTGGGTTCCAGATCTTACATTTATATTTGCAGTTCCTCCAGTTGCTTTGTATGCGTTTATGTTGTTCCTTCTTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

113

Amino Acids

12.9

Weight (kDa)

9.45

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 6 - 81 2.4e-08 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 174
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 3 cut(s) 31, 90, 166
AluBI AGCT 2 cut(s) 62, 206
AluI AGCT 2 cut(s) 62, 206
AlwI GGATC 1 cut(s) 263
AoxI GGCC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 46
BalI TGGCCA 1 cut(s) 176
BccI CCATC 2 cut(s) 166, 211
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 149
BglII AGATCT 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 300
BshFI GGCC 1 cut(s) 176
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 3, 255, 272
BspANI GGCC 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 300
BssMI GATC 3 cut(s) 3, 255, 272
Bst6I CTCTTC 2 cut(s) 91, 197
BstAFI CTTAAG 1 cut(s) 149
BstKTI GATC 3 cut(s) 6, 258, 275
BstMBI GATC 3 cut(s) 3, 255, 272
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
CviJI RGCY 6 cut(s) 19, 41, 62, 176, 206, 221
CviKI_1 RGCY 6 cut(s) 19, 41, 62, 176, 206, 221
DpnI GATC 3 cut(s) 5, 257, 274
DpnII GATC 3 cut(s) 3, 255, 272
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 91, 197
EarI CTCTTC 2 cut(s) 91, 197
FaiI YATR 9 cut(s) 59, 132, 203, 212, 253, 285, 313, 321, 336
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 26, 58
FbaI TGATCA 1 cut(s) 3
FspBI CTAG 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 1 cut(s) 176
HinfI GANTC 1 cut(s) 180
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 12, 341
Hpy188III TCNNGA 2 cut(s) 47, 270
HpyAV CCTTC 2 cut(s) 244, 339
HpyCH4V TGCA 2 cut(s) 95, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 255, 272
LpnPI CCDG 3 cut(s) 190, 283, 313
MaeI CTAG 1 cut(s) 47
MalI GATC 3 cut(s) 5, 257, 274
MboI GATC 3 cut(s) 3, 255, 272
MboII GAAGA 2 cut(s) 78, 184
MflI RGATCY 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 4 cut(s) 94, 133, 200, 307
Mox20I TGGCCA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 176
MseI TTAA 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 176
MspCI CTTAAG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 312
NdeII GATC 3 cut(s) 3, 255, 272
NlaIV GGNNCC 1 cut(s) 268
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 272
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 3 cut(s) 3, 255, 272
SchI GAGTC 1 cut(s) 174
SetI ASST 3 cut(s) 64, 125, 208
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SspMI CTAG 1 cut(s) 47
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 184
TspRI CASTG 1 cut(s) 235
Vha464I CTTAAG 1 cut(s) 149
XbaI TCTAGA 1 cut(s) 46
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.