Rorug05G0226900

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000157
Physical Location & Seq
Reverse (-)
23525916 .. 23527610
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0226900.1

Sequence Viewer

Length: 1050 bp
ATGGCTAGCTACAGCTCCTCTTCTGATCCGAAATCAGATTCATTGGAGGTTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCTGAGTTGCTTGAAAAGCTGCATGAGAAGTGGAGCAAAGTAGAAAAGAAACCATACCCAGCCATGTATTCCAGCACTTATGGTGGAATTATTCTTGATCCAGCTATGATGGTGATCCCAATGGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCCATTCTCTTAAATGGATACCTGTATGAGCTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCCCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTCTTGTGCAACTGGCGGCAGCATCACAGATCAAGAAAGGAACTCTAAGATATTGGATGAGTGCCGGTCCTGGTGATTTTTTGCTCCAACCTACAGGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAATCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGGAGAAGGTCCAAATGTGAATGTAGCTTTTATAACACATGACAATGAGCTTATTGTACCTTTCTTTGACAAGATCCTTAGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTTGAATCAGGGCGTCTGAAAGGTGTGACAACTAGAAACATTAGTGTGGAAGAAGCCAAAAGCTCAGCAGAAATGATGTTTGTAGGAAGCACACTGCCGCTGTTGCCAATTGTCGCATGGGACGAACAGCCCGTTGGTGATGGGAAGGTGGGAGAATTGACAATGGCACTCTCCGATCTGGTGTGGGATGATATGGTAGCAGGATCTACTGAAACACAGAGGACAGCAGTTCCTTACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

349

Amino Acids

38.45

Weight (kDa)

5.28

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 82 - 309 5.5e-39 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 471
AciI CCGC 3 cut(s) 307, 389, 905
AclWI GGATC 7 cut(s) 20, 185, 202, 331, 344, 751, 1018
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 820
AfaI GTAC 2 cut(s) 741, 772
AfiI CCNNNNNNNGG 2 cut(s) 354, 780
AflIII ACRYGT 1 cut(s) 1044
AgsI TTSAA 6 cut(s) 85, 107, 327, 517, 791, 812
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AluBI AGCT 9 cut(s) 9, 15, 112, 197, 289, 323, 710, 733, 870
AluI AGCT 9 cut(s) 9, 15, 112, 197, 289, 323, 710, 733, 870
AlwI GGATC 7 cut(s) 20, 185, 202, 331, 344, 751, 1018
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 112, 392
AspS9I GGNCC 2 cut(s) 440, 692
AsuHPI GGTGA 4 cut(s) 217, 458, 561, 956
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 2 cut(s) 440, 692
BaeGI GKGCMC 1 cut(s) 476
BamHI GGATCC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 99, 404
BccI CCATC 3 cut(s) 196, 306, 941
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 269
BclI TGATCA 1 cut(s) 543
BfaI CTAG 3 cut(s) 6, 794, 840
BfmI CTRYAG 2 cut(s) 10, 465
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 4 cut(s) 113, 390, 393, 905
BlpI GCTNAGC 1 cut(s) 871
BlsI GCNGC 4 cut(s) 114, 391, 394, 906
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 440, 692
BmgT120I GGNCC 2 cut(s) 440, 692
BmiI GGNNCC 3 cut(s) 338, 473, 646
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 404
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 871
BsaAI YACGTR 1 cut(s) 1045
BsaBI GATNNNNATC 2 cut(s) 206, 297
BsaHI GRCGYC 1 cut(s) 820
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 780
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 390
Bse8I GATNNNNATC 2 cut(s) 206, 297
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 4 cut(s) 298, 435, 673, 1000
BseJI GATNNNNATC 2 cut(s) 206, 297
BseLI CCNNNNNNNGG 2 cut(s) 354, 780
BseMII CTCAG 3 cut(s) 87, 328, 885
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 2 cut(s) 99, 404
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 471
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 354, 780
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 2 cut(s) 372, 485
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 476
Bsp1720I GCTNAGC 1 cut(s) 871
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 3 cut(s) 307, 389, 905
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 88, 327, 884
BspLI GGNNCC 3 cut(s) 338, 473, 646
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 7 cut(s) 20, 185, 202, 331, 344, 751, 1018
BspT107I GGYRCC 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 820
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 775
Bst6I CTCTTC 2 cut(s) 25, 369
BstACI GRCGYC 1 cut(s) 820
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 1045
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 5 cut(s) 96, 314, 419, 761, 871
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 298, 435, 673, 1000
BstMWI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 2 cut(s) 10, 465
BstSLI GKGCMC 1 cut(s) 476
BstV1I GCAGC 2 cut(s) 99, 404
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 3 cut(s) 336, 756, 1010
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 3 cut(s) 336, 756, 1010
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 298, 435, 673, 1000
BtsI GCAGTG 1 cut(s) 899
BtsIMutI CAGTG 2 cut(s) 527, 899
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 440, 692
CseI GACGC 1 cut(s) 809
Csp6I GTAC 2 cut(s) 740, 771
CviAII CATG 8 cut(s) 77, 116, 157, 226, 242, 562, 722, 924
CviQI GTAC 2 cut(s) 740, 771
DdeI CTNAG 5 cut(s) 96, 314, 419, 761, 871
Eam1104I CTCTTC 2 cut(s) 25, 369
EarI CTCTTC 2 cut(s) 25, 369
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 440, 692
Eco57I CTGAAG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
FaqI GGGAC 1 cut(s) 941
FatI CATG 8 cut(s) 76, 115, 156, 225, 241, 561, 721, 923
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 4 cut(s) 113, 390, 393, 905
FokI GGATG 4 cut(s) 305, 442, 680, 1007
Fsp4HI GCNGC 4 cut(s) 113, 390, 393, 905
FspBI CTAG 3 cut(s) 6, 794, 840
GluI GCNGC 4 cut(s) 113, 390, 393, 905
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 809
Hin1I GRCGYC 1 cut(s) 820
Hin1II CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 3 cut(s) 38, 629, 812
HpaII CCGG 1 cut(s) 438
HphI GGTGA 4 cut(s) 217, 458, 561, 956
Hpy166II GTNNAC 2 cut(s) 360, 598
Hpy188III TCNNGA 3 cut(s) 188, 406, 788
Hpy8I GTNNAC 2 cut(s) 360, 598
HpyAV CCTTC 5 cut(s) 524, 614, 667, 683, 946
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 1 cut(s) 1044
HpyCH4V TGCA 6 cut(s) 115, 382, 485, 494, 525, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
HpyF3I CTNAG 5 cut(s) 96, 314, 419, 761, 871
HpySE526I ACGT 1 cut(s) 1044
Hsp92I GRCGYC 1 cut(s) 820
Hsp92II CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
Ksp22I TGATCA 1 cut(s) 543
LmnI GCTCC 5 cut(s) 20, 126, 369, 462, 644
Lsp1109I GCAGC 2 cut(s) 99, 404
LweI GCATC 1 cut(s) 404
MaeI CTAG 3 cut(s) 6, 794, 840
MaeII ACGT 1 cut(s) 1044
MaeIII GTNAC 3 cut(s) 567, 677, 832
MboII GAAGA 5 cut(s) 12, 356, 601, 647, 869
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 3 cut(s) 336, 756, 1010
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 3 cut(s) 180, 915, 962
MmeI TCCRAC 2 cut(s) 31, 484
MnlI CCTC 9 cut(s) 28, 40, 55, 230, 323, 352, 502, 562, 1020
MseI TTAA 4 cut(s) 69, 269, 537, 779
MslI CAYNNNNRTG 4 cut(s) 377, 662, 726, 851
MspA1I CMGCKG 1 cut(s) 907
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 372, 485
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 659
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
NlaIV GGNNCC 3 cut(s) 338, 473, 646
NmuCI GTSAC 2 cut(s) 567, 832
PcsI WCGNNNNNNNCGW 2 cut(s) 927, 936
PctI GAATGC 2 cut(s) 372, 485
PfeI GAWTC 3 cut(s) 38, 629, 812
PkrI GCNGC 4 cut(s) 114, 391, 394, 906
Ppu21I YACGTR 1 cut(s) 1045
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 338, 473, 646
PspPI GGNCC 2 cut(s) 440, 692
PsuI RGATCY 3 cut(s) 336, 756, 1010
RsaI GTAC 2 cut(s) 741, 772
RsaNI GTAC 2 cut(s) 740, 771
RseI CAYNNNNRTG 4 cut(s) 377, 662, 726, 851
SaqAI TTAA 4 cut(s) 69, 269, 537, 779
SatI GCNGC 4 cut(s) 113, 390, 393, 905
Sau96I GGNCC 2 cut(s) 440, 692
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 2 cut(s) 10, 465
SinI GGWCC 2 cut(s) 440, 692
SmiMI CAYNNNNRTG 4 cut(s) 377, 662, 726, 851
Sse9I AATT 3 cut(s) 180, 915, 962
SsiI CCGC 3 cut(s) 307, 389, 905
SspMI CTAG 3 cut(s) 6, 794, 840
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 1 cut(s) 1047
TaqI TCGA 2 cut(s) 60, 235
TaqII GACCGA 1 cut(s) 345
TasI AATT 3 cut(s) 180, 915, 962
TauI GCSGC 2 cut(s) 392, 907
TfiI GAWTC 3 cut(s) 38, 629, 812
Tru1I TTAA 4 cut(s) 69, 269, 537, 779
Tru9I TTAA 4 cut(s) 69, 269, 537, 779
TscAI CASTG 2 cut(s) 527, 906
TseFI GTSAC 2 cut(s) 567, 832
TseI GCWGC 2 cut(s) 112, 392
Tsp45I GTSAC 2 cut(s) 567, 832
TspDTI ATGAA 5 cut(s) 30, 65, 221, 578, 602
TspRI CASTG 2 cut(s) 527, 906
VpaK11BI GGWCC 2 cut(s) 440, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 921
XspI CTAG 3 cut(s) 6, 794, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.