MD03G1027500.v1.1

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000157
Physical Location & Seq
Reverse (-)
2269198 .. 2278284
9087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1027500.v1.1.491

Sequence Viewer

Length: 1749 bp
ATGACGGCAGCAAATGGCGTTCCGGCTGCTGGAAATGTAAGCATCGGCATTGTGGCTTCTACGCCAATTCAACCGAGGCATCCTTCGCGTCATCTACTAGAAAATACCAATAGAGATGCATACTTGAAATTGTGTATACCCCTTTACAAAGCTGCAATGCAAGGCAACTGGGAAGCCGCCAAAGGCATCTTAAATAGCCATCCGGCACTCTTAACTGCTAGCATAGCAGAAGGATGGGAAACTGTTCTTCACGTTGCAGCAGGAGCAAAGAACAATATTCAGATTGTGTCGGAGCTAGTCAACTTGATGGTTGAAGAAGACTTGGCACTTCAAGATATTAAAGGAAATACGGCACTATGCTTTGCCGCTGCAACTGGAAGAGTAGAAGTTGCCAAGATTTTGATAGAAAAAAATATTTTGTTGCCAACAATCCGCGGTGGTCAAGGAATGACACCACTCTATATGGCTGCTTTGTTTGGACAGTCTGAAATGGCGTGGTATTTGTACCCTCAAACAATTAAAATGCTGGATGAAATGGGCCGCATTGTTCTATTTTTCTGTTTTATCGAACATGGTCTTTATGATTTAGCCATGAAGTTGCTACAAGATTATAAAACATTAGCAACGGCCCGTATAGACAACAAGGAAACAGCCTTGCATGTCTTAGCTCGAAAGTCTTCAGAATTTGGCGACCAAAGTACTCCAGTAATGTGCAGTAGACTTATCAAAACATTTGAAGTACTCCCATGCATGAGGGTTTCTCACAAAAGAAGCTTGAAGCAAACTCAAGCCTTGAAGCTAGTCAAATGCCTTTGGGAAGAAATGTTGAAACATGACGACGACAAAGTCATGTGTTTGATAAGAGAGCCTTCAGAATTAGTATTTGACGCAGCGAAATTAGGAAATTATGAGTTCTTATCTGTGCTTATTGACTCTTATCCGAAATTACAATTGGAATATGATGAAAAAAATCGGACCATATTCCATATCGCAGTCTTGCATCGTCATGCAAGTATCTTCAATCTAGTGCATGAGACAGGCTCCATCAAAGATATCATAGCAACATTTATTGATGATGAGAATAACAACATTCTACATCTAGCTGCAAAATTGGCACCTCAAGACCAACTCAATCTTGTGTCCGGAGCAGCTCTTCAGATGCAGCGAGAATTAGTATGGTTTGAGGAAGTTGAGAAGATTGTGCAAACTCACTTTATAGATATGAAAAATAGGCAAGGTAAAACACCTCGAGAATTATTCACTAGTGAGCATGAGGATCTATTGCGCAAGGGAGAATCATGGATGAAGGACACTGCAACCGCATTTAGCATTCCGGGAGGTATAGATGATAATAAAGGAACACCGAATTTCATAAAAGAGGCGGCATTTTTAATATTCGCCATATTTGATGGAGTAGCACTCTTTTCCTCCTCGACTGCAATCCTCATGTTCTTGTACATCCTCACATCGCGGTATGCTGAAAACGATTTTCTCAAATCTTTACCGTTGAAGTTGATGGTCGGACTTGCATCACTCTTCGTGTCAATAACATCCATGATGGTAACTTTCAGCACAACCTTCTATTTATCTTGCCATTATGGATTAAGATGGGTTCCAGATCTTATATTCATATTTGCATTTGTCCCAGTTGCTTTGTTCGCTTTCTTGCAGTTTCCTCTCTTGTTTGATATGTTCTTTTCGACATATTGTTCAAGTCTTCTGTTTCAGCCAAGGAGGGATATGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

583

Amino Acids

65.57

Weight (kDa)

6.17

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 48 - 138 5.1e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 83 - 172 1.6e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 119 - 166 3.6e-06 Ankyrin repeats (many copies)
PGG PF13962 439 - 529 3.5e-15 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AasI GACNNNNNNGTC 1 cut(s) 845
Acc16I TGCGCA 1 cut(s) 1286
AccB1I GGYRCC 1 cut(s) 1114
AccI GTMKAC 2 cut(s) 136, 718
AccII CGCG 3 cut(s) 88, 435, 1471
AccIII TCCGGA 1 cut(s) 1142
AciI CCGC 8 cut(s) 177, 366, 433, 435, 541, 1320, 1382, 1471
AclWI GGATC 1 cut(s) 1284
AcsI RAATTY 2 cut(s) 683, 1366
AcuI CTGAAG 3 cut(s) 663, 855, 1139
AfaI GTAC 4 cut(s) 506, 700, 741, 1457
AfiI CCNNNNNNNGG 1 cut(s) 29
AhlI ACTAGT 1 cut(s) 1262
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AluBI AGCT 7 cut(s) 152, 295, 668, 774, 799, 1103, 1151
AluI AGCT 7 cut(s) 152, 295, 668, 774, 799, 1103, 1151
Alw26I GTCTC 1 cut(s) 1028
AlwI GGATC 1 cut(s) 1284
Ama87I CYCGRG 1 cut(s) 1248
Aor13HI TCCGGA 1 cut(s) 1142
AoxI GGCC 2 cut(s) 538, 627
ApoI RAATTY 2 cut(s) 683, 1366
Asp700I GAANNNNTTC 2 cut(s) 243, 676
AspLEI GCGC 1 cut(s) 1287
AspS9I GGNCC 3 cut(s) 538, 628, 975
AsuC2I CCSGG 1 cut(s) 1335
AsuNHI GCTAGC 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 1248
AvaII GGWCC 1 cut(s) 975
BanI GGYRCC 1 cut(s) 1114
BbsI GAAGAC 3 cut(s) 324, 669, 1709
BccI CCATC 8 cut(s) 207, 228, 301, 1052, 1403, 1510, 1552, 1602
BceAI ACGGC 3 cut(s) 21, 366, 642
BcnI CCSGG 1 cut(s) 1335
BcoDI GTCTC 1 cut(s) 1028
BcuI ACTAGT 1 cut(s) 1262
BfaI CTAG 7 cut(s) 98, 219, 296, 800, 1025, 1100, 1263
BglII AGATCT 1 cut(s) 1618
BmcAI AGTACT 2 cut(s) 700, 741
Bme1390I CCNGG 1 cut(s) 1335
Bme18I GGWCC 1 cut(s) 975
BmeT110I CYCGRG 1 cut(s) 1248
BmgT120I GGNCC 3 cut(s) 538, 628, 975
BmiI GGNNCC 3 cut(s) 1042, 1116, 1614
BmrFI CCNGG 1 cut(s) 1335
BmrI ACTGGG 2 cut(s) 178, 1640
BmsI GCATC 7 cut(s) 51, 88, 106, 195, 1009, 1149, 1538
BmtI GCTAGC 1 cut(s) 222
BmuI ACTGGG 2 cut(s) 178, 1640
BpiI GAAGAC 3 cut(s) 324, 669, 1709
BplI GAGNNNNNCTC 6 cut(s) 745, 777, 1025, 1057, 1404, 1436
BpmI CTGGAG 1 cut(s) 687
BpuEI CTTGAG 2 cut(s) 771, 1104
BpuMI CCSGG 1 cut(s) 1335
BsaJI CCNNGG 3 cut(s) 74, 433, 1730
BsaWI WCCGGW 1 cut(s) 1142
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 4 cut(s) 173, 379, 704, 1646
Bse3DI GCAATG 1 cut(s) 162
BseAI TCCGGA 1 cut(s) 1142
BseDI CCNNGG 3 cut(s) 74, 433, 1730
BseGI GGATG 7 cut(s) 79, 199, 239, 535, 1308, 1458, 1550
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 4 cut(s) 173, 379, 704, 1646
BseRI GAGGAG 1 cut(s) 1420
BsgI GTGCAG 1 cut(s) 733
Bsh1236I CGCG 3 cut(s) 88, 435, 1471
BshFI GGCC 2 cut(s) 540, 629
BshNI GGYRCC 1 cut(s) 1114
BsiHKCI CYCGRG 1 cut(s) 1248
BsiSI CCGG 4 cut(s) 23, 203, 1143, 1334
BslFI GGGAC 1 cut(s) 1628
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 1028
BsmFI GGGAC 1 cut(s) 1628
BsmI GAATGC 1 cut(s) 1329
BsnI GGCC 2 cut(s) 540, 629
BsoBI CYCGRG 1 cut(s) 1248
Bsp13I TCCGGA 1 cut(s) 1142
Bsp1407I TGTACA 1 cut(s) 1455
Bsp143I GATC 3 cut(s) 1276, 1618, 1743
BspACI CCGC 8 cut(s) 177, 366, 433, 435, 541, 1320, 1382, 1471
BspANI GGCC 2 cut(s) 540, 629
BspEI TCCGGA 1 cut(s) 1142
BspFNI CGCG 3 cut(s) 88, 435, 1471
BspLI GGNNCC 3 cut(s) 1042, 1116, 1614
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 1 cut(s) 1284
BspQI GCTCTTC 1 cut(s) 1158
BspT107I GGYRCC 1 cut(s) 1114
BsrDI GCAATG 1 cut(s) 162
BsrGI TGTACA 1 cut(s) 1455
BsrI ACTGG 4 cut(s) 173, 379, 704, 1646
BssECI CCNNGG 3 cut(s) 74, 433, 1730
BssMI GATC 3 cut(s) 1276, 1618, 1743
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 1730
Bst1107I GTATAC 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 244, 483, 1506
Bst6I CTCTTC 3 cut(s) 373, 1158, 1541
BstAUI TGTACA 1 cut(s) 1455
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 664
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 7 cut(s) 79, 199, 239, 535, 1308, 1458, 1550
BstFNI CGCG 3 cut(s) 88, 435, 1471
BstHHI GCGC 1 cut(s) 1287
BstKTI GATC 3 cut(s) 1279, 1621, 1746
BstMAI GTCTC 1 cut(s) 1028
BstMBI GATC 3 cut(s) 1276, 1618, 1743
BstMWI GCNNNNNNNGC 5 cut(s) 85, 224, 263, 1112, 1658
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 1333
BstUI CGCG 3 cut(s) 88, 435, 1471
BstV2I GAAGAC 3 cut(s) 324, 669, 1709
BstX2I RGATCY 2 cut(s) 1276, 1618
BstYI RGATCY 2 cut(s) 1276, 1618
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 540, 629
BtgI CCRYGG 1 cut(s) 433
BtgZI GCGATG 1 cut(s) 1452
BtsCI GGATG 7 cut(s) 79, 199, 239, 535, 1308, 1458, 1550
BtsI GCAGTG 1 cut(s) 1311
BtsIMutI CAGTG 1 cut(s) 1311
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 1 cut(s) 1287
Cfr13I GGNCC 3 cut(s) 538, 628, 975
Cfr42I CCGCGG 1 cut(s) 436
CseI GACGC 2 cut(s) 77, 896
Csp6I GTAC 4 cut(s) 505, 699, 740, 1456
CviQI GTAC 4 cut(s) 505, 699, 740, 1456
DdeI CTNAG 1 cut(s) 664
DpnI GATC 3 cut(s) 1278, 1620, 1745
DpnII GATC 3 cut(s) 1276, 1618, 1743
DrdI GACNNNNNNGTC 1 cut(s) 845
DseDI GACNNNNNNGTC 1 cut(s) 845
Eam1104I CTCTTC 3 cut(s) 373, 1158, 1541
EarI CTCTTC 3 cut(s) 373, 1158, 1541
Eco130I CCWWGG 1 cut(s) 1730
Eco32I GATATC 1 cut(s) 1054
Eco47I GGWCC 1 cut(s) 975
Eco57I CTGAAG 3 cut(s) 663, 855, 1139
Eco88I CYCGRG 1 cut(s) 1248
EcoRV GATATC 1 cut(s) 1054
EcoT14I CCWWGG 1 cut(s) 1730
EcoT22I ATGCAT 2 cut(s) 121, 752
ErhI CCWWGG 1 cut(s) 1730
FalI AAGNNNNNCTT 2 cut(s) 853, 885
FaqI GGGAC 1 cut(s) 1628
FblI GTMKAC 2 cut(s) 136, 718
FokI GGATG 7 cut(s) 66, 186, 246, 542, 1315, 1445, 1537
FspBI CTAG 7 cut(s) 98, 219, 296, 800, 1025, 1100, 1263
FspI TGCGCA 1 cut(s) 1286
GlaI GCGC 1 cut(s) 1286
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 2 cut(s) 540, 629
HapII CCGG 4 cut(s) 23, 203, 1143, 1334
HgaI GACGC 2 cut(s) 77, 896
HhaI GCGC 1 cut(s) 1287
Hin6I GCGC 1 cut(s) 1285
HinP1I GCGC 1 cut(s) 1285
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 772
HinfI GANTC 2 cut(s) 932, 1295
HpaII CCGG 4 cut(s) 23, 203, 1143, 1334
Hpy166II GTNNAC 3 cut(s) 137, 301, 719
Hpy188I TCNGA 9 cut(s) 282, 292, 487, 682, 874, 942, 975, 1158, 1523
Hpy188III TCNNGA 5 cut(s) 332, 1121, 1143, 1250, 1616
Hpy8I GTNNAC 3 cut(s) 137, 301, 719
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 5 cut(s) 93, 224, 879, 1300, 1588
HpyCH4III ACNGT 3 cut(s) 244, 483, 1506
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 224, 263, 1112, 1658
HpyF3I CTNAG 1 cut(s) 664
HpySE526I ACGT 1 cut(s) 252
HspAI GCGC 1 cut(s) 1285
Kpn2I TCCGGA 1 cut(s) 1142
KspI CCGCGG 1 cut(s) 436
Kzo9I GATC 3 cut(s) 1276, 1618, 1743
LguI GCTCTTC 1 cut(s) 1158
LmnI GCTCC 4 cut(s) 263, 292, 1046, 1145
LweI GCATC 7 cut(s) 51, 88, 106, 195, 1009, 1149, 1538
MaeI CTAG 7 cut(s) 98, 219, 296, 800, 1025, 1100, 1263
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 1561
MalI GATC 3 cut(s) 1278, 1620, 1745
MboI GATC 3 cut(s) 1276, 1618, 1743
MfeI CAATTG 1 cut(s) 950
MflI RGATCY 2 cut(s) 1276, 1618
MlyI GAGTC 1 cut(s) 926
MmeI TCCRAC 2 cut(s) 270, 1501
Mph1103I ATGCAT 2 cut(s) 121, 752
MroI TCCGGA 1 cut(s) 1142
MroXI GAANNNNTTC 2 cut(s) 243, 676
MseI TTAA 6 cut(s) 191, 212, 339, 519, 1391, 1604
MslI CAYNNNNRTG 1 cut(s) 1005
MspA1I CMGCKG 2 cut(s) 368, 435
MspI CCGG 4 cut(s) 23, 203, 1143, 1334
MspR9I CCNGG 1 cut(s) 1335
MunI CAATTG 1 cut(s) 950
Mva1269I GAATGC 1 cut(s) 1329
MvnI CGCG 3 cut(s) 88, 435, 1471
MwoI GCNNNNNNNGC 5 cut(s) 85, 224, 263, 1112, 1658
NciI CCSGG 1 cut(s) 1335
NdeII GATC 3 cut(s) 1276, 1618, 1743
NheI GCTAGC 1 cut(s) 218
NlaIV GGNNCC 3 cut(s) 1042, 1116, 1614
NsbI TGCGCA 1 cut(s) 1286
NsiI ATGCAT 2 cut(s) 121, 752
NspI RCATGY 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 1248
PciSI GCTCTTC 1 cut(s) 1158
PctI GAATGC 1 cut(s) 1329
PdmI GAANNNNTTC 2 cut(s) 243, 676
PfeI GAWTC 1 cut(s) 1295
PflFI GACNNNGTC 1 cut(s) 845
PfoI TCCNGGA 1 cut(s) 1333
PleI GAGTC 1 cut(s) 926
PpsI GAGTC 1 cut(s) 926
PsiI TTATAA 1 cut(s) 612
PspN4I GGNNCC 3 cut(s) 1042, 1116, 1614
PspPI GGNCC 3 cut(s) 538, 628, 975
PsuI RGATCY 2 cut(s) 1276, 1618
PsyI GACNNNGTC 1 cut(s) 845
RsaI GTAC 4 cut(s) 506, 700, 741, 1457
RsaNI GTAC 4 cut(s) 505, 699, 740, 1456
RseI CAYNNNNRTG 1 cut(s) 1005
SacII CCGCGG 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 1158
SaqAI TTAA 6 cut(s) 191, 212, 339, 519, 1391, 1604
Sau3AI GATC 3 cut(s) 1276, 1618, 1743
Sau96I GGNCC 3 cut(s) 538, 628, 975
ScaI AGTACT 2 cut(s) 700, 741
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 1 cut(s) 1335
SfaNI GCATC 7 cut(s) 51, 88, 106, 195, 1009, 1149, 1538
Sfr274I CTCGAG 1 cut(s) 1248
Sfr303I CCGCGG 1 cut(s) 436
SgrBI CCGCGG 1 cut(s) 436
SinI GGWCC 1 cut(s) 975
SlaI CTCGAG 1 cut(s) 1248
SmiMI CAYNNNNRTG 1 cut(s) 1005
SmlI CTYRAG 3 cut(s) 786, 1119, 1248
SmoI CTYRAG 3 cut(s) 786, 1119, 1248
SpeI ACTAGT 1 cut(s) 1262
SsiI CCGC 8 cut(s) 177, 366, 433, 435, 541, 1320, 1382, 1471
SspI AATATT 3 cut(s) 277, 415, 1395
SspMI CTAG 7 cut(s) 98, 219, 296, 800, 1025, 1100, 1263
StyD4I CCNGG 1 cut(s) 1333
StyI CCWWGG 1 cut(s) 1730
TaaI ACNGT 3 cut(s) 244, 483, 1506
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 567, 670, 1249, 1433, 1700
TatI WGTACW 3 cut(s) 698, 739, 1455
TauI GCSGC 4 cut(s) 179, 368, 543, 1385
TfiI GAWTC 1 cut(s) 1295
Tru1I TTAA 6 cut(s) 191, 212, 339, 519, 1391, 1604
Tru9I TTAA 6 cut(s) 191, 212, 339, 519, 1391, 1604
TscAI CASTG 1 cut(s) 1318
TspDTI ATGAA 7 cut(s) 546, 608, 978, 1238, 1319, 1360, 1618
TspRI CASTG 1 cut(s) 1318
Tth111I GACNNNGTC 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 975
XapI RAATTY 2 cut(s) 683, 1366
XceI RCATGY 1 cut(s) 662
XhoI CTCGAG 1 cut(s) 1248
XmiI GTMKAC 2 cut(s) 136, 718
XmnI GAANNNNTTC 2 cut(s) 243, 676
XspI CTAG 7 cut(s) 98, 219, 296, 800, 1025, 1100, 1263
ZrmI AGTACT 2 cut(s) 700, 741
Zsp2I ATGCAT 2 cut(s) 121, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.