Rorug01G0023700

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000157
Physical Location & Seq
Reverse (-)
3889784 .. 3890717
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0023700.1

Sequence Viewer

Length: 267 bp
ATGCAAAACAACATGGCAGACTTCAAGGACCACATTCCATGTCATCTGGGCCAGTTGGCATTTGGGCTACAGCAATACATAATCTTACTCACTACTAATGGTATTGATCCTAATGGGCTTGGAGAACTGATAAAGCAGTTTGGTGGAACTGGTTATGAAAGCTCAGACGTAATGGTGATAGATGAGGTTCAGATGAGAAATATCAAAACAGTTCAAGAAGTGAAGAAACTGTATTGGTATATTTGTGCAGGAAAGGTACAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

88

Amino Acids

9.95

Weight (kDa)

5.49

Isoelectric Point (pI)

19.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 101
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 2 cut(s) 25, 215
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 28, 49
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 28
BaeI ACNNNNGTAYC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 49
Bse1I ACTGG 2 cut(s) 52, 154
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 52, 154
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 51
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 176
BspPI GGATC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 52, 154
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 211, 231
BstDEI CTNAG 1 cut(s) 163
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 28, 49
Csp6I GTAC 1 cut(s) 257
CviAII CATG 2 cut(s) 13, 39
CviJI RGCY 4 cut(s) 51, 67, 118, 162
CviKI_1 RGCY 4 cut(s) 51, 67, 118, 162
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 28
FaeI CATG 2 cut(s) 16, 42
FaiI YATR 5 cut(s) 14, 40, 80, 156, 240
FatI CATG 2 cut(s) 12, 38
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 2 cut(s) 16, 42
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 166, 192
Hpy188III TCNNGA 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 211, 231
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 4, 248
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 16, 42
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 32, 65, 135, 234
MaeII ACGT 1 cut(s) 168
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 235
MnlI CCTC 1 cut(s) 178
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 16, 42
PspPI GGNCC 2 cut(s) 28, 49
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 2 cut(s) 28, 49
SetI ASST 4 cut(s) 164, 171, 189, 258
SfcI CTRYAG 1 cut(s) 68
SgeI CNNG 9 cut(s) 25, 37, 51, 59, 64, 131, 162, 227, 261
SinI GGWCC 1 cut(s) 28
TaaI ACNGT 2 cut(s) 211, 231
TaiI ACGT 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.