protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 341 |
| AciI | CCGC | 4 cut(s) | 26, 275, 341, 501 |
| AcsI | RAATTY | 1 cut(s) | 49 |
| AfaI | GTAC | 1 cut(s) | 486 |
| AgsI | TTSAA | 2 cut(s) | 238, 584 |
| AjiI | CACGTC | 1 cut(s) | 10 |
| AluBI | AGCT | 2 cut(s) | 68, 526 |
| AluI | AGCT | 2 cut(s) | 68, 526 |
| Alw26I | GTCTC | 1 cut(s) | 250 |
| ApeKI | GCWGC | 3 cut(s) | 134, 526, 529 |
| ApoI | RAATTY | 1 cut(s) | 49 |
| AseI | ATTAAT | 1 cut(s) | 308 |
| AspLEI | GCGC | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 1 cut(s) | 319 |
| BbsI | GAAGAC | 2 cut(s) | 155, 366 |
| BbvI | GCAGC | 3 cut(s) | 146, 513, 516 |
| BccI | CCATC | 1 cut(s) | 416 |
| BclI | TGATCA | 1 cut(s) | 226 |
| BcoDI | GTCTC | 1 cut(s) | 250 |
| BfaI | CTAG | 1 cut(s) | 356 |
| BfmI | CTRYAG | 1 cut(s) | 495 |
| BfoI | RGCGCY | 1 cut(s) | 206 |
| BisI | GCNGC | 4 cut(s) | 26, 135, 527, 530 |
| BlsI | GCNGC | 4 cut(s) | 27, 136, 528, 531 |
| BmgBI | CACGTC | 1 cut(s) | 10 |
| BmsI | GCATC | 1 cut(s) | 262 |
| BpiI | GAAGAC | 2 cut(s) | 155, 366 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BsaAI | YACGTR | 1 cut(s) | 554 |
| BsaI | GGTCTC | 1 cut(s) | 250 |
| Bse3DI | GCAATG | 1 cut(s) | 447 |
| BseGI | GGATG | 1 cut(s) | 129 |
| BseMI | GCAATG | 1 cut(s) | 447 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BseXI | GCAGC | 3 cut(s) | 146, 513, 516 |
| BseYI | CCCAGC | 1 cut(s) | 205 |
| BsgI | GTGCAG | 1 cut(s) | 72 |
| Bsh1236I | CGCG | 1 cut(s) | 341 |
| BslFI | GGGAC | 1 cut(s) | 399 |
| BsmAI | GTCTC | 1 cut(s) | 250 |
| BsmFI | GGGAC | 1 cut(s) | 399 |
| Bso31I | GGTCTC | 1 cut(s) | 250 |
| Bsp143I | GATC | 1 cut(s) | 226 |
| BspACI | CCGC | 4 cut(s) | 26, 275, 341, 501 |
| BspFNI | CGCG | 1 cut(s) | 341 |
| BspHI | TCATGA | 1 cut(s) | 70 |
| BspMAI | CTGCAG | 1 cut(s) | 499 |
| BspTNI | GGTCTC | 1 cut(s) | 250 |
| BsrDI | GCAATG | 1 cut(s) | 447 |
| BssMI | GATC | 1 cut(s) | 226 |
| Bst4CI | ACNGT | 3 cut(s) | 199, 221, 439 |
| Bst6I | CTCTTC | 3 cut(s) | 88, 290, 404 |
| BstBAI | YACGTR | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 1 cut(s) | 499 |
| BstF5I | GGATG | 1 cut(s) | 129 |
| BstFNI | CGCG | 1 cut(s) | 341 |
| BstH2I | RGCGCY | 1 cut(s) | 206 |
| BstHHI | GCGC | 1 cut(s) | 205 |
| BstKTI | GATC | 1 cut(s) | 229 |
| BstMAI | GTCTC | 1 cut(s) | 250 |
| BstMBI | GATC | 1 cut(s) | 226 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 503 |
| BstNSI | RCATGY | 1 cut(s) | 95 |
| BstSFI | CTRYAG | 1 cut(s) | 495 |
| BstUI | CGCG | 1 cut(s) | 341 |
| BstV1I | GCAGC | 3 cut(s) | 146, 513, 516 |
| BstV2I | GAAGAC | 2 cut(s) | 155, 366 |
| BtrI | CACGTC | 1 cut(s) | 10 |
| BtsCI | GGATG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 1 cut(s) | 499 |
| CciI | TCATGA | 1 cut(s) | 70 |
| CfoI | GCGC | 1 cut(s) | 205 |
| CseI | GACGC | 1 cut(s) | 140 |
| Csp6I | GTAC | 1 cut(s) | 485 |
| CviAII | CATG | 5 cut(s) | 43, 71, 92, 144, 289 |
| CviJI | RGCY | 4 cut(s) | 68, 294, 416, 526 |
| CviKI_1 | RGCY | 4 cut(s) | 68, 294, 416, 526 |
| CviQI | GTAC | 1 cut(s) | 485 |
| DpnI | GATC | 1 cut(s) | 228 |
| DpnII | GATC | 1 cut(s) | 226 |
| Eam1104I | CTCTTC | 3 cut(s) | 88, 290, 404 |
| EarI | CTCTTC | 3 cut(s) | 88, 290, 404 |
| Eco31I | GGTCTC | 1 cut(s) | 250 |
| FaeI | CATG | 5 cut(s) | 46, 74, 95, 147, 292 |
| FaqI | GGGAC | 1 cut(s) | 399 |
| FatI | CATG | 5 cut(s) | 42, 70, 91, 143, 288 |
| FauI | CCCGC | 1 cut(s) | 494 |
| FbaI | TGATCA | 1 cut(s) | 226 |
| Fnu4HI | GCNGC | 4 cut(s) | 26, 135, 527, 530 |
| FokI | GGATG | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 4 cut(s) | 26, 135, 527, 530 |
| FspBI | CTAG | 1 cut(s) | 356 |
| GlaI | GCGC | 1 cut(s) | 204 |
| GluI | GCNGC | 4 cut(s) | 26, 135, 527, 530 |
| GsaI | CCCAGC | 1 cut(s) | 209 |
| HaeII | RGCGCY | 1 cut(s) | 206 |
| HgaI | GACGC | 1 cut(s) | 140 |
| HhaI | GCGC | 1 cut(s) | 205 |
| Hin1II | CATG | 5 cut(s) | 46, 74, 95, 147, 292 |
| Hin6I | GCGC | 1 cut(s) | 203 |
| HinP1I | GCGC | 1 cut(s) | 203 |
| HinfI | GANTC | 1 cut(s) | 387 |
| HphI | GGTGA | 1 cut(s) | 319 |
| Hpy166II | GTNNAC | 1 cut(s) | 183 |
| Hpy188I | TCNGA | 2 cut(s) | 55, 271 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 356, 463, 545 |
| Hpy8I | GTNNAC | 1 cut(s) | 183 |
| Hpy99I | CGWCG | 1 cut(s) | 190 |
| HpyAV | CCTTC | 1 cut(s) | 39 |
| HpyCH4III | ACNGT | 3 cut(s) | 199, 221, 439 |
| HpyCH4IV | ACGT | 3 cut(s) | 9, 334, 553 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 89, 95, 281, 302, 497 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 503 |
| HpySE526I | ACGT | 3 cut(s) | 9, 334, 553 |
| Hsp92II | CATG | 5 cut(s) | 46, 74, 95, 147, 292 |
| HspAI | GCGC | 1 cut(s) | 203 |
| Ksp22I | TGATCA | 1 cut(s) | 226 |
| Kzo9I | GATC | 1 cut(s) | 226 |
| LpnPI | CCDG | 4 cut(s) | 191, 431, 483, 530 |
| Lsp1109I | GCAGC | 3 cut(s) | 146, 513, 516 |
| LweI | GCATC | 1 cut(s) | 262 |
| MaeI | CTAG | 1 cut(s) | 356 |
| MaeII | ACGT | 3 cut(s) | 9, 334, 553 |
| MaeIII | GTNAC | 1 cut(s) | 335 |
| MalI | GATC | 1 cut(s) | 228 |
| MboI | GATC | 1 cut(s) | 226 |
| MboII | GAAGA | 6 cut(s) | 75, 155, 277, 371, 391, 436 |
| MluCI | AATT | 4 cut(s) | 49, 192, 254, 595 |
| MlyI | GAGTC | 1 cut(s) | 381 |
| MnlI | CCTC | 5 cut(s) | 103, 203, 340, 379, 500 |
| MseI | TTAA | 4 cut(s) | 104, 308, 522, 598 |
| MslI | CAYNNNNRTG | 1 cut(s) | 41 |
| MvnI | CGCG | 1 cut(s) | 341 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 503 |
| NdeII | GATC | 1 cut(s) | 226 |
| NlaIII | CATG | 5 cut(s) | 46, 74, 95, 147, 292 |
| NspI | RCATGY | 1 cut(s) | 95 |
| PagI | TCATGA | 1 cut(s) | 70 |
| PkrI | GCNGC | 4 cut(s) | 27, 136, 528, 531 |
| PleI | GAGTC | 1 cut(s) | 381 |
| PpsI | GAGTC | 1 cut(s) | 381 |
| Ppu21I | YACGTR | 1 cut(s) | 554 |
| PshBI | ATTAAT | 1 cut(s) | 308 |
| PspFI | CCCAGC | 1 cut(s) | 205 |
| PstI | CTGCAG | 1 cut(s) | 499 |
| RsaI | GTAC | 1 cut(s) | 486 |
| RsaNI | GTAC | 1 cut(s) | 485 |
| RseI | CAYNNNNRTG | 1 cut(s) | 41 |
| SaqAI | TTAA | 4 cut(s) | 104, 308, 522, 598 |
| SatI | GCNGC | 4 cut(s) | 26, 135, 527, 530 |
| Sau3AI | GATC | 1 cut(s) | 226 |
| SchI | GAGTC | 1 cut(s) | 381 |
| SetI | ASST | 8 cut(s) | 12, 70, 332, 337, 366, 483, 528, 556 |
| SfaNI | GCATC | 1 cut(s) | 262 |
| SfcI | CTRYAG | 1 cut(s) | 495 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 41 |
| SmlI | CTYRAG | 1 cut(s) | 380 |
| SmoI | CTYRAG | 1 cut(s) | 380 |
| Sse9I | AATT | 4 cut(s) | 49, 192, 254, 595 |
| SsiI | CCGC | 4 cut(s) | 26, 275, 341, 501 |
| SspMI | CTAG | 1 cut(s) | 356 |
| TaaI | ACNGT | 3 cut(s) | 199, 221, 439 |
| TaiI | ACGT | 3 cut(s) | 12, 337, 556 |
| TasI | AATT | 4 cut(s) | 49, 192, 254, 595 |
| TatI | WGTACW | 1 cut(s) | 484 |
| TauI | GCSGC | 1 cut(s) | 28 |
| Tru1I | TTAA | 4 cut(s) | 104, 308, 522, 598 |
| Tru9I | TTAA | 4 cut(s) | 104, 308, 522, 598 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TseI | GCWGC | 3 cut(s) | 134, 526, 529 |
| TspDTI | ATGAA | 8 cut(s) | 21, 59, 87, 140, 250, 277, 391, 436 |
| TspRI | CASTG | 1 cut(s) | 178 |
| VspI | ATTAAT | 1 cut(s) | 308 |
| XapI | RAATTY | 1 cut(s) | 49 |
| XbaI | TCTAGA | 1 cut(s) | 355 |
| XceI | RCATGY | 1 cut(s) | 95 |
| XspI | CTAG | 1 cut(s) | 356 |