Rh5DG322100

Ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
41864843 .. 41875996
11154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG322100.1

Sequence Viewer

Length: 423 bp
ATGAGGTTGATCAAATATCCTTCAAATTTATTATTTGACGCAGCAGAATTAGGGAATTATGAGTTTCTGGCGGCACTTATGAGCTCTTATCCTGAGTTGGTATGGGAAACTGATGAAAAAAATCGAACCATTATCCATGTCGCAGTTCTGCATCGTCATGCAAGTATCTTTAATCTAGTGCATGAAATAGGCTCGATCAAAGATGTCATAGTGACATATGAGGATGATCAGGGTAACAACATTGTGCATATGGCTGCAAAATTAGCACCTCAAAATCAGTTGAATCTAGTGTCAGGCGTAGCTCTTCAAATGCATCGAGAGTTGGTATGGGATTGCAAAATTGGTGAAGAAACGTCGACAATGGAGGTCGGCGTTTGTTTAGGGTTTAGTGCGGCAAAATTGGCAAAATTGGCGTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.61

Weight (kDa)

5.42

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 356
AciI CCGC 2 cut(s) 71, 392
AcsI RAATTY 1 cut(s) 25
AgsI TTSAA 3 cut(s) 24, 283, 308
AluBI AGCT 2 cut(s) 84, 302
AluI AGCT 2 cut(s) 84, 302
Alw21I GWGCWC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 41, 254
ApoI RAATTY 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 356
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 53, 241
BclI TGATCA 2 cut(s) 9, 226
BfaI CTAG 2 cut(s) 176, 287
BisI GCNGC 4 cut(s) 42, 72, 255, 393
BlsI GCNGC 4 cut(s) 43, 73, 256, 394
BmsI GCATC 2 cut(s) 160, 322
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 53, 241
BsiHKAI GWGCWC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 9, 195, 226
BspACI CCGC 2 cut(s) 71, 392
BspCNI CTCAG 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 309
BssMI GATC 3 cut(s) 9, 195, 226
Bst6I CTCTTC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 93, 420
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 3 cut(s) 12, 198, 229
BstMBI GATC 3 cut(s) 9, 195, 226
BstMWI GCNNNNNNNGC 3 cut(s) 263, 401, 410
BstV1I GCAGC 2 cut(s) 53, 241
BtsCI GGATG 1 cut(s) 229
CseI GACGC 1 cut(s) 47
CviAII CATG 3 cut(s) 137, 158, 182
CviJI RGCY 4 cut(s) 84, 192, 254, 302
CviKI_1 RGCY 4 cut(s) 84, 192, 254, 302
DdeI CTNAG 2 cut(s) 93, 420
DpnI GATC 3 cut(s) 11, 197, 228
DpnII GATC 3 cut(s) 9, 195, 226
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 3 cut(s) 140, 161, 185
FatI CATG 3 cut(s) 136, 157, 181
FauNDI CATATG 2 cut(s) 217, 249
FbaI TGATCA 2 cut(s) 9, 226
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 4 cut(s) 42, 72, 255, 393
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 4 cut(s) 42, 72, 255, 393
FspBI CTAG 2 cut(s) 176, 287
GluI GCNGC 4 cut(s) 42, 72, 255, 393
HgaI GACGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 140, 161, 185
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 1 cut(s) 283
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 357
Hpy188III TCNNGA 2 cut(s) 92, 317
Hpy8I GTNNAC 1 cut(s) 357
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 7 cut(s) 151, 161, 181, 247, 257, 313, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 401, 410
HpyF3I CTNAG 2 cut(s) 93, 420
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 140, 161, 185
Ksp22I TGATCA 2 cut(s) 9, 226
Kzo9I GATC 3 cut(s) 9, 195, 226
LguI GCTCTTC 1 cut(s) 309
LpnPI CCDG 4 cut(s) 53, 105, 215, 279
Lsp1109I GCAGC 2 cut(s) 53, 241
LweI GCATC 2 cut(s) 160, 322
MaeI CTAG 2 cut(s) 176, 287
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 211, 233
MalI GATC 3 cut(s) 11, 197, 228
MboI GATC 3 cut(s) 9, 195, 226
MboII GAAGA 2 cut(s) 296, 359
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 7 cut(s) 25, 47, 55, 260, 339, 398, 407
MnlI CCTC 3 cut(s) 214, 279, 358
Mph1103I ATGCAT 1 cut(s) 315
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 263, 401, 410
NdeI CATATG 2 cut(s) 217, 249
NdeII GATC 3 cut(s) 9, 195, 226
NlaIII CATG 3 cut(s) 140, 161, 185
NmuCI GTSAC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 4 cut(s) 43, 73, 256, 394
Psp124BI GAGCTC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 86
SalI GTCGAC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 42, 72, 255, 393
Sau3AI GATC 3 cut(s) 9, 195, 226
SduI GDGCHC 1 cut(s) 86
SetI ASST 6 cut(s) 8, 86, 271, 304, 356, 369
SfaNI GCATC 2 cut(s) 160, 322
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 7 cut(s) 25, 47, 55, 260, 339, 398, 407
SsiI CCGC 2 cut(s) 71, 392
SspMI CTAG 2 cut(s) 176, 287
SstI GAGCTC 1 cut(s) 86
TaiI ACGT 1 cut(s) 356
TaqI TCGA 4 cut(s) 124, 194, 316, 356
TasI AATT 7 cut(s) 25, 47, 55, 260, 339, 398, 407
TauI GCSGC 2 cut(s) 74, 395
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 2 cut(s) 41, 254
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 129, 198
XapI RAATTY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 356
XspI CTAG 2 cut(s) 176, 287
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.