Rorug01G0024700

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000157
Physical Location & Seq
Reverse (-)
4013609 .. 4014512
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0024700.1

Sequence Viewer

Length: 846 bp
ATGGAATTCAAAGAGTTCAACAAGGTTCAGGAAAATCTGAGCAAGGAACTAGCAGGTAAAAAGTTTTTAATTGTTCTGGATGATGTTTGGAATACATATGGCTACGGTCTATGGACAAAATTGCAGTCCCCCCTTCGTGTTGGAGCACCAGGAAGTAAGATACTTGTGACAACGCGTGATGAAGACGTAGCAAAAATGATGGGAGCCACTGAAGTTCATAATTTGAATGGTATATCAAATGATGATTGCTGGAAAGTTTTTGAGCAGCATGGACCCTTGAATCTTCACAATGACGTGCCAACACGAGGGCTTTGGGTGGTCTTCTATGTTGTAAAGAAAGATATGAATGGGAAGAGATACTCGGCAACAAAATGTGGAGTCTATCAGACGAGAGTGGCATTCTCCCAGTGTGGGTCAGGGCTACAAGAGATTGGGACATTGTTGCATCTACAAGGGGCACTGCGCCTCTCAATACTGGAGAATGTGCTTTGTGTTGCAGATGCTAATAGTGCCAACTTAAAAGGCAAGGAGAGGCTTGAAGCCTTGTTACTAGAATGGTCTGATTCTAGTGGCTCAGCAGAAATTGCATCAGATGTGCTTGACAAGTTACAACCCCATAGGAAGCTCAAAGAACTAACAATCTGCGGTTATGATGGATTGAATTTTTCACCGTGGATTGGAAGTCTTTTATTCTCTAATATGGTGCTTGCAAAGTTAGAAGGTTGTTATAATTGTGATTTATTGCCACCATTTAGACAATTGCCTTGTCTCAAAGAACTTCATATACAAGTAATGGATTCAGGGAAAACTGTTGAACCTGAGTTTTATGGAGAAGGTAACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

281

Amino Acids

31.37

Weight (kDa)

5.91

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 6 - 90 1.4e-17 NB-ARC domain
LRR_R13L1-DRL21 PF25019 141 - 265 1.6e-31 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
Acc36I ACCTGC 1 cut(s) 44
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 645
AcsI RAATTY 2 cut(s) 5, 661
AcuI CTGAAG 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 305, 411, 677
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 7 cut(s) 10, 19, 226, 280, 539, 661, 815
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 625
AluI AGCT 1 cut(s) 625
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 2 cut(s) 5, 661
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 660
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 460
BarI GAAGNNNNNNTAC 2 cut(s) 531, 563
BauI CACGAG 1 cut(s) 303
BbsI GAAGAC 2 cut(s) 189, 313
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 277
BccI CCATC 2 cut(s) 193, 647
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 3 cut(s) 50, 551, 567
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 266
BlpI GCTNAGC 1 cut(s) 574
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 205, 274
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 454, 490, 596
BmuI ACTGGG 1 cut(s) 400
BpiI GAAGAC 2 cut(s) 189, 313
BpmI CTGGAG 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 671
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 411, 677
Bse1I ACTGG 2 cut(s) 406, 480
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 305, 411, 677
BseMII CTCAG 3 cut(s) 29, 588, 810
BseNI ACTGG 2 cut(s) 406, 480
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 148
BslFI GGGAC 2 cut(s) 112, 448
BslI CCNNNNNNNGG 3 cut(s) 305, 411, 677
BsmAI GTCTC 1 cut(s) 773
BsmFI GGGAC 2 cut(s) 112, 448
BsmI GAATGC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 148, 460
Bsp1720I GCTNAGC 1 cut(s) 574
BspACI CCGC 1 cut(s) 645
BspCNI CTCAG 3 cut(s) 30, 587, 811
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 205, 274
BspMI ACCTGC 1 cut(s) 44
BsrI ACTGG 2 cut(s) 406, 480
BssECI CCNNGG 1 cut(s) 671
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 107, 672, 811
Bst6I CTCTTC 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 584
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 3 cut(s) 38, 574, 819
BstDSI CCRYGG 1 cut(s) 671
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 465
BstMAI GTCTC 1 cut(s) 773
BstMWI GCNNNNNNNGC 2 cut(s) 509, 584
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 2 cut(s) 189, 313
BtgI CCRYGG 1 cut(s) 671
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 3 cut(s) 207, 413, 458
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 708
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 272
CviAII CATG 1 cut(s) 269
CviJI RGCY 8 cut(s) 102, 206, 310, 421, 535, 542, 573, 625
CviKI_1 RGCY 8 cut(s) 102, 206, 310, 421, 535, 542, 573, 625
DdeI CTNAG 3 cut(s) 38, 574, 819
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 272
FaqI GGGAC 2 cut(s) 112, 448
FatI CATG 1 cut(s) 268
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 3 cut(s) 50, 551, 567
GlaI GCGC 1 cut(s) 464
GluI GCNGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 497
HhaI GCGC 1 cut(s) 465
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HinfI GANTC 4 cut(s) 280, 378, 563, 797
HphI GGTGA 1 cut(s) 660
Hpy188I TCNGA 4 cut(s) 39, 387, 562, 592
Hpy188III TCNNGA 2 cut(s) 29, 77
HpyAV CCTTC 3 cut(s) 143, 713, 827
HpyCH4III ACNGT 3 cut(s) 107, 672, 811
HpyCH4IV ACGT 2 cut(s) 186, 294
HpyCH4V TGCA 5 cut(s) 124, 445, 497, 587, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 584
HpyF3I CTNAG 3 cut(s) 38, 574, 819
HpySE526I ACGT 2 cut(s) 186, 294
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 143, 203
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 3 cut(s) 454, 490, 596
MaeI CTAG 3 cut(s) 50, 551, 567
MaeII ACGT 2 cut(s) 186, 294
MaeIII GTNAC 4 cut(s) 166, 546, 606, 836
MboII GAAGA 4 cut(s) 194, 275, 313, 364
MfeI CAATTG 1 cut(s) 758
MhlI GDGCHC 2 cut(s) 148, 460
MluCI AATT 8 cut(s) 5, 69, 119, 220, 582, 661, 730, 758
MluI ACGCGT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 3 cut(s) 299, 476, 525
MseI TTAA 2 cut(s) 68, 518
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 509, 584
NdeI CATATG 1 cut(s) 97
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 205, 274
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 166
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 280, 563, 797
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PsiI TTATAA 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 205, 274
PspPI GGNCC 1 cut(s) 272
PsrI GAACNNNNNNTAC 2 cut(s) 768, 800
SaqAI TTAA 2 cut(s) 68, 518
SatI GCNGC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 148, 460
SetI ASST 8 cut(s) 27, 58, 189, 297, 627, 724, 820, 838
SfaNI GCATC 3 cut(s) 454, 490, 596
SinI GGWCC 1 cut(s) 272
Sse9I AATT 8 cut(s) 5, 69, 119, 220, 582, 661, 730, 758
SsiI CCGC 1 cut(s) 645
SspMI CTAG 3 cut(s) 50, 551, 567
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 107, 672, 811
TaiI ACGT 2 cut(s) 189, 297
TasI AATT 8 cut(s) 5, 69, 119, 220, 582, 661, 730, 758
TfiI GAWTC 3 cut(s) 280, 563, 797
Tru1I TTAA 2 cut(s) 68, 518
Tru9I TTAA 2 cut(s) 68, 518
TscAI CASTG 3 cut(s) 214, 413, 465
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 195, 206, 359, 770
TspRI CASTG 3 cut(s) 214, 413, 465
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 5, 661
XspI CTAG 3 cut(s) 50, 551, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.