RchiOBHm_Chr1g0316381

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000157
Physical Location & Seq
Forward (+)
3703312 .. 3704510
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54681

Sequence Viewer

Length: 942 bp
ATGGTTCTGGACGTTATAAGAAGGCCATCACATGCTTTATTTATCGCAACAAAAATGGGAAATTTTGAGTTTGTGGCCGAGCTTCTGCGCTCATATCCTGACTTGATATGGGAAACAGATGAAAAACACCGGAGTGTATTTCACATTGCAGTTATGTTCCATGACACAAGTTTCTTCAATCTGCTAAATCAGTTGGGTGTATACAAGGATTTTATAGTCTCCTTCAAGGACGATGAGAACAATAACATACTACATTTAGCGGCAAAAATGGCTCCACCAAATCATTTGGGTACCGTGCCAGGACCTGCCTTTCAAATGCAACGGGAGTTACTGTGGTTCCAGGGGCTGGAAAAGATTCTCCAACCTTCCTATCTAGAGATGAAAAATGCAGAAGGTAAAACACCTAAAGATTTATTTACCGAAGAGCATAAAGGTTTAATGGTAAAGGGAGAATCGTGGATGAAAAGTTTGGCCAGCTCATGCACGCTTGCTTCAACACTTATCGCCATTTCTGTTTTTACTTCACTCACCAGTGTCATTGATGACAGAATCACTTATAATGGAGGAGGAACACAAACGACACCGCCAGTTTGTGTCTTATCAAATATTTTTGCATTATTTTTCTCTTTGCTTGGAATAATAATATTCGTGTCCATCCTGTCATCACGCTTCGCAAAGGATGATTTCCTCATATCACTGCCCTTGAAGCTCATAGTTGGACTCGGATCACTCTACATCTCTACTATAGCCATGATGGTTTCTTTTGGCACCGCCTTATACACAACATATCACCATAGACTAAACTGGCTTCCTGTTCTTGTTTTCATACTAGCATCTCTGCTACTTAGTTGTCTTTATCATCTACACAGTCCTCTCGTTTCCTATGTATTACACACAATGTACCATTCTTGGGTGAGATTACCAACTACACATAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

313

Amino Acids

35.37

Weight (kDa)

6.92

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 17, 558
Acc36I ACCTGC 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 2 cut(s) 290, 767
AccB7I CCANNNNNTGG 1 cut(s) 346
AccI GTMKAC 1 cut(s) 201
AciI CCGC 3 cut(s) 260, 584, 771
AclWI GGATC 1 cut(s) 733
AcoI YGGCCR 2 cut(s) 75, 471
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 2 cut(s) 292, 902
AfiI CCNNNNNNNGG 2 cut(s) 346, 910
AgsI TTSAA 5 cut(s) 178, 226, 314, 495, 706
AjnI CCWGG 2 cut(s) 298, 339
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 3 cut(s) 82, 477, 709
AluI AGCT 3 cut(s) 82, 477, 709
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 733
AlwNI CAGNNNCTG 2 cut(s) 305, 346
AoxI GGCC 3 cut(s) 23, 75, 471
ApoI RAATTY 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 354
Asp718I GGTACC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 3 cut(s) 520, 782, 925
AvaII GGWCC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 473
BanI GGYRCC 2 cut(s) 290, 767
BccI CCATC 3 cut(s) 34, 662, 748
BciT130I CCWGG 2 cut(s) 300, 341
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 374, 830
BfmI CTRYAG 1 cut(s) 744
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 300, 341
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 4 cut(s) 273, 292, 338, 769
BmrFI CCNGG 2 cut(s) 300, 341
BmsI GCATC 1 cut(s) 842
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 910
Bse1I ACTGG 3 cut(s) 531, 587, 809
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 300, 341
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 3 cut(s) 465, 654, 685
BseLI CCNNNNNNNGG 2 cut(s) 346, 910
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 3 cut(s) 531, 587, 809
BseRI GAGGAG 1 cut(s) 579
BshFI GGCC 3 cut(s) 25, 77, 473
BshNI GGYRCC 2 cut(s) 290, 767
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 346, 910
BsmAI GTCTC 1 cut(s) 223
BsnI GGCC 3 cut(s) 25, 77, 473
Bsp143I GATC 1 cut(s) 725
BspACI CCGC 3 cut(s) 260, 584, 771
BspANI GGCC 3 cut(s) 25, 77, 473
BspLI GGNNCC 4 cut(s) 273, 292, 338, 769
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 733
BspQI GCTCTTC 1 cut(s) 417
BspT107I GGYRCC 2 cut(s) 290, 767
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 3 cut(s) 531, 587, 809
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 1 cut(s) 725
BssNAI GTATAC 1 cut(s) 202
Bst1107I GTATAC 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 300, 341
Bst4CI ACNGT 3 cut(s) 295, 333, 869
Bst6I CTCTTC 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 475, 485, 489
BstDEI CTNAG 1 cut(s) 845
BstF5I GGATG 3 cut(s) 465, 654, 685
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 728
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 1 cut(s) 725
BstMWI GCNNNNNNNGC 2 cut(s) 269, 706
BstNI CCWGG 2 cut(s) 300, 341
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 298, 339
BstSFI CTRYAG 1 cut(s) 744
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 3 cut(s) 25, 77, 473
BtsCI GGATG 3 cut(s) 465, 654, 685
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 2 cut(s) 538, 695
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 475, 485, 489
CaiI CAGNNNCTG 2 cut(s) 305, 346
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 291, 901
CviAII CATG 4 cut(s) 32, 161, 480, 751
CviQI GTAC 2 cut(s) 291, 901
DdeI CTNAG 1 cut(s) 845
DpnI GATC 1 cut(s) 727
DpnII GATC 1 cut(s) 725
EaeI YGGCCR 2 cut(s) 75, 471
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 298, 339
FaeI CATG 4 cut(s) 35, 164, 483, 754
FatI CATG 4 cut(s) 31, 160, 479, 750
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 3 cut(s) 472, 641, 692
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 2 cut(s) 374, 830
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 3 cut(s) 25, 77, 473
HapII CCGG 1 cut(s) 130
HhaI GCGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 35, 164, 483, 754
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 4 cut(s) 355, 452, 549, 720
HpaII CCGG 1 cut(s) 130
HphI GGTGA 3 cut(s) 520, 782, 925
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 725
Hpy188III TCNNGA 3 cut(s) 8, 98, 374
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 4 cut(s) 15, 232, 375, 386
HpyCH4III ACNGT 3 cut(s) 295, 333, 869
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 5 cut(s) 149, 319, 389, 483, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 706
HpyF3I CTNAG 1 cut(s) 845
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 4 cut(s) 35, 164, 483, 754
HspAI GCGC 1 cut(s) 88
KpnI GGTACC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 725
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 1 cut(s) 277
LweI GCATC 1 cut(s) 842
MaeI CTAG 2 cut(s) 374, 830
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 327
MalI GATC 1 cut(s) 727
MboI GATC 1 cut(s) 725
MboII GAAGA 2 cut(s) 166, 434
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 1 cut(s) 61
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 1 cut(s) 714
MmeI TCCRAC 2 cut(s) 385, 697
MnlI CCTC 4 cut(s) 557, 560, 698, 882
Mox20I TGGCCA 1 cut(s) 473
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 473
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 473
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 2 cut(s) 300, 341
MvaI CCWGG 2 cut(s) 300, 341
MwoI GCNNNNNNNGC 2 cut(s) 269, 706
NdeII GATC 1 cut(s) 725
NlaIII CATG 4 cut(s) 35, 164, 483, 754
NlaIV GGNNCC 4 cut(s) 273, 292, 338, 769
NmeAIII GCCGAG 1 cut(s) 103
NspI RCATGY 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 3 cut(s) 355, 452, 549
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
PpuMI RGGWCCY 1 cut(s) 302
PsiI TTATAA 2 cut(s) 17, 558
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 298, 339
PspGI CCWGG 2 cut(s) 298, 339
PspN4I GGNNCC 4 cut(s) 273, 292, 338, 769
PspPI GGNCC 1 cut(s) 302
PspPPI RGGWCCY 1 cut(s) 302
PstNI CAGNNNCTG 2 cut(s) 305, 346
RsaI GTAC 2 cut(s) 292, 902
RsaNI GTAC 2 cut(s) 291, 901
RseI CAYNNNNRTG 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 725
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 714
ScrFI CCNGG 2 cut(s) 300, 341
SetI ASST 9 cut(s) 15, 84, 307, 367, 397, 406, 436, 479, 711
SfaNI GCATC 1 cut(s) 842
SfcI CTRYAG 1 cut(s) 744
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 61
SsiI CCGC 3 cut(s) 260, 584, 771
SspI AATATT 2 cut(s) 607, 645
SspMI CTAG 2 cut(s) 374, 830
StyD4I CCNGG 2 cut(s) 298, 339
TaaI ACNGT 3 cut(s) 295, 333, 869
TaiI ACGT 1 cut(s) 15
TasI AATT 1 cut(s) 61
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 3 cut(s) 355, 452, 549
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 2 cut(s) 538, 702
TspDTI ATGAA 4 cut(s) 135, 395, 476, 814
TspRI CASTG 2 cut(s) 538, 702
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 61
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 2 cut(s) 374, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.