Rmu_sc0004520.1_g000004

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004520.1
OG0000157
Physical Location & Seq
Reverse (-)
12334 .. 15607
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004520.1_g000004.1.cds

Sequence Viewer

Length: 1014 bp
atggctaccccacaagcacaacatatatcacctgccgggattcaattaaccacggctagcgggaattcagcaactgggctagatagtcaatcagcggacattggcatcgacatttctgctgattcggctcaacctaccagacctttgccttatctactagaacatataaatagagaagaataccttaagacatgtgttgccctctataagtatgcactaaagggcgattgggaagctgcggaacgaatcttgaaaaaggatacgaaacttctgagagcaagcatatctagaggatatgaaacagtccttcacgttgcagcaggggcaagacgtattcattttgtggagaaactgatcagcatgatgaacgtagaggatttggcactgcaggacgtaaatggaaacactgccttgtgtattgccgctgcggctggatctctagacattgtccagattttgatacaaaagaatatgtctttactatcgattcgaggcggtaaagatatgacaccagcctacatggctgttgtgttgggacagtcagaaatggcatggcacctgtacgctgaaacagaattagggaattatgagtttctggcggcacttatgagctcttatcctgagttggtatgggaaactgatgaaaaaaatcgaaccattgtccatgtcgcagttctgcatcgtcatgcaagtatctttaatctagtgcatgaaataggctcgatcaaagatgtcatagtgacatatgaggatgatcagggtaacaacattgtgcatatggctgcaaaattagcacctcaaaatcagttgaatctagtccgatggactagcactcttttcctcttcaactgcaatgctaatgttcttgttcatcctaacctcgcggtacgcagaaaacgattttctcaaatccttaccattgaagttgatgataggactcacttccctgttcatctctatagcatccatgatgatggctttcagcaccgccttctatttgtcttgtcaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

337

Amino Acids

37.57

Weight (kDa)

6.09

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 555
AccII CGCG 1 cut(s) 884
AciI CCGC 9 cut(s) 60, 95, 239, 423, 428, 495, 599, 884, 988
AclWI GGATC 1 cut(s) 442
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 2 cut(s) 563, 888
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 5 cut(s) 44, 253, 811, 847, 923
AluBI AGCT 2 cut(s) 236, 612
AluI AGCT 2 cut(s) 236, 612
Alw21I GWGCWC 1 cut(s) 614
AlwI GGATC 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 74
ApeKI GCWGC 4 cut(s) 236, 317, 425, 782
ApoI RAATTY 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 21
AsuNHI GCTAGC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 555
BanII GRGCYC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 4 cut(s) 223, 329, 412, 769
BccI CCATC 2 cut(s) 816, 968
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 2 cut(s) 354, 754
BcnI CCSGG 1 cut(s) 37
BfaI CTAG 8 cut(s) 57, 80, 158, 288, 440, 704, 815, 828
BfmI CTRYAG 2 cut(s) 386, 958
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 253
BglI GCCNNNNNGGC 2 cut(s) 428, 521
BisI GCNGC 7 cut(s) 237, 318, 423, 426, 429, 600, 783
BlsI GCNGC 7 cut(s) 238, 319, 424, 427, 430, 601, 784
Bme1390I CCNGG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 114, 688, 972
BmtI GCTAGC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 859
BseCI ATCGAT 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 757, 871, 963
BseMI GCAATG 1 cut(s) 859
BseMII CTCAG 2 cut(s) 263, 612
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 4 cut(s) 223, 329, 412, 769
Bsh1236I CGCG 1 cut(s) 884
BshNI GGYRCC 1 cut(s) 555
BshVI ATCGAT 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 614
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 549
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 4 cut(s) 354, 434, 723, 754
BspACI CCGC 9 cut(s) 60, 95, 239, 423, 428, 495, 599, 884, 988
BspCNI CTCAG 2 cut(s) 264, 613
BspDI ATCGAT 1 cut(s) 485
BspFNI CGCG 1 cut(s) 884
BspLI GGNNCC 1 cut(s) 557
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 555
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 859
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 4 cut(s) 354, 434, 723, 754
Bst4CI ACNGT 2 cut(s) 304, 540
Bst6I CTCTTC 1 cut(s) 848
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 58, 280
BstDEI CTNAG 2 cut(s) 272, 621
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 757, 871, 963
BstFNI CGCG 1 cut(s) 884
BstKTI GATC 4 cut(s) 357, 437, 726, 757
BstMBI GATC 4 cut(s) 354, 434, 723, 754
BstMWI GCNNNNNNNGC 5 cut(s) 125, 323, 428, 521, 791
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 2 cut(s) 386, 958
BstUI CGCG 1 cut(s) 884
BstV1I GCAGC 4 cut(s) 223, 329, 412, 769
BstX2I RGATCY 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 974
BstYI RGATCY 1 cut(s) 434
Bsu15I ATCGAT 1 cut(s) 485
BsuI GTATCC 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 3 cut(s) 757, 871, 963
BtsI GCAGTG 2 cut(s) 383, 405
BtsIMutI CAGTG 2 cut(s) 383, 405
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 58, 280
CaiI CAGNNNCTG 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 485
Csp6I GTAC 2 cut(s) 562, 887
CviAII CATG 8 cut(s) 192, 361, 520, 552, 665, 686, 710, 968
CviQI GTAC 2 cut(s) 562, 887
DdeI CTNAG 2 cut(s) 272, 621
DpnI GATC 4 cut(s) 356, 436, 725, 756
DpnII GATC 4 cut(s) 354, 434, 723, 754
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 614
FaeI CATG 8 cut(s) 195, 364, 523, 555, 668, 689, 713, 971
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 549
FatI CATG 8 cut(s) 191, 360, 519, 551, 664, 685, 709, 967
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 2 cut(s) 745, 777
FbaI TGATCA 2 cut(s) 354, 754
Fnu4HI GCNGC 7 cut(s) 237, 318, 423, 426, 429, 600, 783
FokI GGATG 3 cut(s) 764, 858, 950
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 7 cut(s) 237, 318, 423, 426, 429, 600, 783
FspBI CTAG 8 cut(s) 57, 80, 158, 288, 440, 704, 815, 828
GluI GCNGC 7 cut(s) 237, 318, 423, 426, 429, 600, 783
HapII CCGG 1 cut(s) 36
Hin1II CATG 8 cut(s) 195, 364, 523, 555, 668, 689, 713, 971
HinfI GANTC 6 cut(s) 40, 122, 246, 487, 811, 937
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 21
Hpy188I TCNGA 3 cut(s) 273, 544, 821
Hpy188III TCNNGA 5 cut(s) 250, 288, 440, 451, 620
HpyAV CCTTC 2 cut(s) 317, 1001
HpyCH4III ACNGT 2 cut(s) 304, 540
HpyCH4IV ACGT 4 cut(s) 312, 331, 369, 393
HpyCH4V TGCA 9 cut(s) 215, 317, 388, 679, 689, 709, 775, 785, 852
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 323, 428, 521, 791
HpyF3I CTNAG 2 cut(s) 272, 621
HpySE526I ACGT 4 cut(s) 312, 331, 369, 393
Hsp92II CATG 8 cut(s) 195, 364, 523, 555, 668, 689, 713, 971
Ksp22I TGATCA 2 cut(s) 354, 754
Kzo9I GATC 4 cut(s) 354, 434, 723, 754
Lsp1109I GCAGC 4 cut(s) 223, 329, 412, 769
LweI GCATC 3 cut(s) 114, 688, 972
MaeI CTAG 8 cut(s) 57, 80, 158, 288, 440, 704, 815, 828
MaeII ACGT 4 cut(s) 312, 331, 369, 393
MaeIII GTNAC 2 cut(s) 739, 761
MalI GATC 4 cut(s) 356, 436, 725, 756
MboI GATC 4 cut(s) 354, 434, 723, 754
MboII GAAGA 2 cut(s) 188, 835
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 5 cut(s) 44, 64, 575, 583, 788
MlyI GAGTC 1 cut(s) 931
MnlI CCTC 8 cut(s) 212, 284, 367, 485, 742, 807, 851, 890
MseI TTAA 3 cut(s) 47, 186, 699
MslI CAYNNNNRTG 2 cut(s) 684, 972
MspA1I CMGCKG 2 cut(s) 95, 425
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 884
MwoI GCNNNNNNNGC 5 cut(s) 125, 323, 428, 521, 791
NciI CCSGG 1 cut(s) 37
NdeI CATATG 2 cut(s) 745, 777
NdeII GATC 4 cut(s) 354, 434, 723, 754
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 8 cut(s) 195, 364, 523, 555, 668, 689, 713, 971
NlaIV GGNNCC 1 cut(s) 557
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 895
PfeI GAWTC 5 cut(s) 40, 122, 246, 487, 811
PflFI GACNNNGTC 1 cut(s) 446
PkrI GCNGC 7 cut(s) 238, 319, 424, 427, 430, 601, 784
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
PscI ACATGT 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 557
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 434
PsyI GACNNNGTC 1 cut(s) 446
RsaI GTAC 2 cut(s) 563, 888
RsaNI GTAC 2 cut(s) 562, 887
RseI CAYNNNNRTG 2 cut(s) 684, 972
SacI GAGCTC 1 cut(s) 614
SaqAI TTAA 3 cut(s) 47, 186, 699
SatI GCNGC 7 cut(s) 237, 318, 423, 426, 429, 600, 783
Sau3AI GATC 4 cut(s) 354, 434, 723, 754
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 3 cut(s) 114, 688, 972
SfcI CTRYAG 2 cut(s) 386, 958
SmiMI CAYNNNNRTG 2 cut(s) 684, 972
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 5 cut(s) 44, 64, 575, 583, 788
SsiI CCGC 9 cut(s) 60, 95, 239, 423, 428, 495, 599, 884, 988
SspMI CTAG 8 cut(s) 57, 80, 158, 288, 440, 704, 815, 828
SstI GAGCTC 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 304, 540
TaiI ACGT 4 cut(s) 315, 334, 372, 396
TaqI TCGA 5 cut(s) 108, 485, 490, 652, 722
TasI AATT 5 cut(s) 44, 64, 575, 583, 788
TauI GCSGC 3 cut(s) 425, 431, 602
TfiI GAWTC 5 cut(s) 40, 122, 246, 487, 811
Tru1I TTAA 3 cut(s) 47, 186, 699
Tru9I TTAA 3 cut(s) 47, 186, 699
TscAI CASTG 2 cut(s) 390, 412
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 4 cut(s) 236, 317, 425, 782
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 7 cut(s) 312, 326, 380, 657, 726, 860, 941
TspRI CASTG 2 cut(s) 390, 412
Tth111I GACNNNGTC 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 1 cut(s) 64
XbaI TCTAGA 2 cut(s) 287, 439
XceI RCATGY 1 cut(s) 195
XspI CTAG 8 cut(s) 57, 80, 158, 288, 440, 704, 815, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.