Rroxscaffold_4G00330890

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000157
Physical Location & Seq
Forward (+)
64683282 .. 64699939
16658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330890.1

Sequence Viewer

Length: 1734 bp
ATGTCTCGTGACTCGCACACCAGAATAGATATTCCGCTGCCACCGGATGAAGACAAAGCAAAAGATCCAAAATTATGTGTACCATTGTATAAAGCTGCGGTAAAAGGTGATTGGGGAAAGGCTAAAACAATCATCAATGGAGATCCCAATATTGTACGTGCTAGTATCGAGGGTTCGTATACTACACTTCATGTTGCAGTGGGAGCGGGACGTGCTCACTTTGTGGAGGAGTTTGTGAAAATGATGGTGATGGACCAACCAGAGGAGTTAAAAAATGTCCTACAAATGCAGGACAGCAATGGCAATACTGCCTTAACTTTTGCTGCAGCCGGGGGATCAGTAGAAATTGCTAAAATTATGATAGAGAAGGACCCAAGCTTGATACATATACGGGGTGGTAGAGGAGAACAGACGCCACTCTATTTTGCTGCTTTGGCTGGACATCAGAAAATGGCATTATATCTATACTCTGCGTCGTCATATTCAAAAGAAGACTTGGATGCGGTGTTCTTTGCTAGCATAAAATCTGGTCTCTATGGTTTAGCTTCGACATTGCTAAAAGAGAACCCAGATTTTGCTTTTAAACGTGATCATGACAGAAATACGGCCTTTCATTTGTTGGCTCAAAAGCCTGCAGTATTTGCCTCAGAAACTGCCGGAATATATACATATATGAGAGTTCTACGGTGTGGTAACTCTTCACCATCAAGGATAGATGGAAATCCAGCTCATTTGTTACTCAAAGACCTCTTGGACATAGTAGAAAACGAAGACCCAGAATCCATCAGAGAGCTATTGAAAAGTCCCAATTCGCATGTATTGTTTGACGCAGTAGAATCTGGAAATTCTAACCTTGTAGTTGAGCTTATACAAGCTTTTCCTAGTTTGTTGTGGGAAAGAGATGACCAAAGATTGACAATTATACATGCAGCAGTTTCACATCGTGATGCGACTATCTACAACATAATACATGAGATAGGCCTGTTCAAGGATGTGATAGCTGCCTACAACGATACAAACAAGAATAACATGCTTCATTTAGTTGCACAATCAGCTCCGCCAAGTCAGTTAAATAAATTATCTGGGGCAGCTTTTCAAATGCAGCGGGAATTACTATGGTTTGAGGAGGTGAAAAAGATTATGCAACCTTCATATATAGAGATGAAAAATTCAGAAGGCAAAACACCTCAAGAATTGTTCACTGAAACACATGGTACATTATTGAAAGAGGCAGAGACATGGATGAACGGGACAGCACAGTCATGTATGGTTGTGTCAACCCTTATTGCTGGCGCTTTATTTGCAGCAGGGACTACTGTTGCGCTTGGGGATAATCAATATCAAGGAACGTCATCCCCTGATTATGTTCTGAAAAGGACCTCATTTCGGACTTTCATCATATCAGATGCCATAGCATTTTTGTTGGCCTTAGCTGCAACGTTAACGTTCTTGGCTATCCTCACCTCACGTTATGCGGAAAGGAATTTTCTTAAATCCTTACCCTTGAAGTTGATAACGGGACTCACATTACTCTTCTTTTCTATTATATGCATGATGGTGTCATTTGGCATGGCCTTTTTTATTGCTTACGGTCGTAAAGACTTCCTCCCTATTCTCGTAACTGGATGTGCAGTTGTGCCGGTGCTTCTGTATCTTTTTCTGCAGTTTTCCCTTTTGAATGACATTCTTGATTCCACCTTTTCTTCCAAATCTTTATTTATACCTCGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

577

Amino Acids

63.85

Weight (kDa)

6.0

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 32 - 123 6.2e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 96 - 157 4.2e-09 Ankyrin repeats (3 copies)
PGG PF13962 413 - 528 1.3e-16 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1258
AccBSI CCGCTC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 179
AciI CCGC 7 cut(s) 35, 98, 206, 503, 1058, 1105, 1475
AclI AACGTT 2 cut(s) 1439, 1445
AclWI GGATC 3 cut(s) 59, 137, 343
AcsI RAATTY 3 cut(s) 844, 1168, 1483
AcyI GRCGYC 1 cut(s) 413
AdeI CACNNNGTG 2 cut(s) 223, 944
AfaI GTAC 3 cut(s) 81, 156, 1216
AfiI CCNNNNNNNGG 3 cut(s) 262, 988, 1386
AgsI TTSAA 7 cut(s) 486, 799, 988, 1097, 1225, 1507, 1678
AjiI CACGTC 1 cut(s) 212
AloI GAACNNNNNNTCC 2 cut(s) 491, 523
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 3 cut(s) 9, 536, 1229
AlwI GGATC 3 cut(s) 59, 137, 343
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 4 cut(s) 606, 979, 1425, 1572
ApoI RAATTY 3 cut(s) 844, 1168, 1483
AspLEI GCGC 2 cut(s) 1295, 1324
AspS9I GGNCC 3 cut(s) 253, 370, 1377
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 5 cut(s) 119, 259, 693, 1141, 1453
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 3 cut(s) 253, 370, 1377
BauI CACGAG 2 cut(s) 6, 1725
BbsI GAAGAC 3 cut(s) 57, 498, 777
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 6 cut(s) 238, 244, 710, 712, 791, 1549
BceAI ACGGC 1 cut(s) 621
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 3 cut(s) 9, 536, 1229
BfaI CTAG 3 cut(s) 162, 516, 882
BfmI CTRYAG 3 cut(s) 324, 633, 1661
BfoI RGCGCY 1 cut(s) 1296
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 3 cut(s) 253, 370, 1377
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 3 cut(s) 253, 370, 1377
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 331
BmsI GCATC 3 cut(s) 490, 937, 1396
BmtI GCTAGC 1 cut(s) 519
BpiI GAAGAC 3 cut(s) 57, 498, 777
Bpu10I CCTNAGC 1 cut(s) 1429
BpuEI CTTGAG 1 cut(s) 1173
BpuMI CCSGG 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 988, 1386
Bse118I RCCGGY 1 cut(s) 1639
Bse1I ACTGG 1 cut(s) 1627
Bse3DI GCAATG 2 cut(s) 304, 551
Bse8I GATNNNNATC 1 cut(s) 720
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 6 cut(s) 52, 505, 997, 1248, 1352, 1631
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 3 cut(s) 262, 988, 1386
BseMI GCAATG 2 cut(s) 304, 551
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 1 cut(s) 1627
BseRI GAGGAG 4 cut(s) 242, 278, 417, 1139
BsgI GTGCAG 1 cut(s) 1650
Bsh1285I CGRYCG 1 cut(s) 1594
BshFI GGCC 4 cut(s) 608, 981, 1427, 1574
BsiEI CGRYCG 1 cut(s) 1594
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 4 cut(s) 44, 330, 657, 1640
BslFI GGGAC 5 cut(s) 222, 789, 1264, 1324, 1533
BslI CCNNNNNNNGG 3 cut(s) 262, 988, 1386
BsmAI GTCTC 3 cut(s) 9, 536, 1229
BsmFI GGGAC 5 cut(s) 222, 789, 1264, 1324, 1533
BsnI GGCC 4 cut(s) 608, 981, 1427, 1574
Bso31I GGTCTC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 64, 142, 335, 589
BspACI CCGC 7 cut(s) 35, 98, 206, 503, 1058, 1105, 1475
BspANI GGCC 4 cut(s) 608, 981, 1427, 1574
BspCNI CTCAG 1 cut(s) 659
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 3 cut(s) 328, 637, 1665
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 3 cut(s) 59, 137, 343
BspTNI GGTCTC 1 cut(s) 536
BsrBI CCGCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 304, 551
BsrFI RCCGGY 1 cut(s) 1639
BsrI ACTGG 1 cut(s) 1627
BssAI RCCGGY 1 cut(s) 1639
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 4 cut(s) 64, 142, 335, 589
BssNAI GTATAC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 413
BssSI CACGAG 2 cut(s) 6, 1725
Bst1107I GTATAC 1 cut(s) 180
Bst2BI CACGAG 2 cut(s) 6, 1725
Bst4CI ACNGT 4 cut(s) 687, 1260, 1318, 1592
Bst6I CTCTTC 2 cut(s) 703, 1538
BstACI GRCGYC 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 517, 633, 1291
BstDEI CTNAG 2 cut(s) 646, 1429
BstENI CCTNNNNNAGG 1 cut(s) 986
BstF5I GGATG 6 cut(s) 52, 505, 997, 1248, 1352, 1631
BstH2I RGCGCY 1 cut(s) 1296
BstHHI GCGC 2 cut(s) 1295, 1324
BstKTI GATC 4 cut(s) 67, 145, 338, 592
BstMAI GTCTC 3 cut(s) 9, 536, 1229
BstMBI GATC 4 cut(s) 64, 142, 335, 589
BstMCI CGRYCG 1 cut(s) 1594
BstMWI GCNNNNNNNGC 7 cut(s) 203, 212, 434, 641, 1052, 1301, 1433
BstNSI RCATGY 3 cut(s) 818, 929, 1033
BstSCI CCNGG 1 cut(s) 329
BstSFI CTRYAG 3 cut(s) 324, 633, 1661
BstV2I GAAGAC 3 cut(s) 57, 498, 777
BstX2I RGATCY 2 cut(s) 64, 142
BstYI RGATCY 2 cut(s) 64, 142
BstZ17I GTATAC 1 cut(s) 180
BsuRI GGCC 4 cut(s) 608, 981, 1427, 1574
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 6 cut(s) 52, 505, 997, 1248, 1352, 1631
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 1200
Cac8I GCNNGC 3 cut(s) 517, 633, 1291
CaiI CAGNNNCTG 1 cut(s) 653
CciI TCATGA 1 cut(s) 592
CfoI GCGC 2 cut(s) 1295, 1324
Cfr10I RCCGGY 1 cut(s) 1639
Cfr13I GGNCC 3 cut(s) 253, 370, 1377
CseI GACGC 3 cut(s) 421, 462, 836
Csp6I GTAC 3 cut(s) 80, 155, 1215
CviQI GTAC 3 cut(s) 80, 155, 1215
DdeI CTNAG 2 cut(s) 646, 1429
DpnI GATC 4 cut(s) 66, 144, 337, 591
DpnII GATC 4 cut(s) 64, 142, 335, 589
DraI TTTAAA 1 cut(s) 583
DraIII CACNNNGTG 2 cut(s) 223, 944
DrdI GACNNNNNNGTC 1 cut(s) 1258
DseDI GACNNNNNNGTC 1 cut(s) 1258
Eam1104I CTCTTC 2 cut(s) 703, 1538
EarI CTCTTC 2 cut(s) 703, 1538
EciI GGCGGA 1 cut(s) 1047
Eco147I AGGCCT 1 cut(s) 981
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 3 cut(s) 253, 370, 1377
EcoNI CCTNNNNNAGG 1 cut(s) 986
EcoO109I RGGNCCY 2 cut(s) 370, 1377
EcoT22I ATGCAT 1 cut(s) 1553
FaqI GGGAC 5 cut(s) 222, 789, 1264, 1324, 1533
FauI CCCGC 2 cut(s) 199, 1098
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 179
FokI GGATG 6 cut(s) 59, 512, 1004, 1255, 1339, 1638
FspBI CTAG 3 cut(s) 162, 516, 882
GlaI GCGC 2 cut(s) 1294, 1323
HaeII RGCGCY 1 cut(s) 1296
HaeIII GGCC 4 cut(s) 608, 981, 1427, 1574
HapII CCGG 4 cut(s) 44, 330, 657, 1640
HgaI GACGC 3 cut(s) 421, 462, 836
HhaI GCGC 2 cut(s) 1295, 1324
Hin1I GRCGYC 1 cut(s) 413
Hin6I GCGC 2 cut(s) 1293, 1322
HinP1I GCGC 2 cut(s) 1293, 1322
HincII GTYRAC 2 cut(s) 1278, 1443
HindII GTYRAC 2 cut(s) 1278, 1443
HindIII AAGCTT 2 cut(s) 376, 873
HinfI GANTC 5 cut(s) 11, 779, 836, 1521, 1691
HpaI GTTAAC 1 cut(s) 1443
HpaII CCGG 4 cut(s) 44, 330, 657, 1640
HphI GGTGA 5 cut(s) 119, 259, 693, 1141, 1453
Hpy166II GTNNAC 5 cut(s) 80, 180, 1200, 1278, 1443
Hpy188I TCNGA 7 cut(s) 447, 649, 788, 1174, 1371, 1389, 1405
Hpy188III TCNNGA 7 cut(s) 8, 593, 840, 944, 1190, 1688, 1727
Hpy8I GTNNAC 5 cut(s) 80, 180, 1200, 1278, 1443
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 361, 1158, 1169
HpyCH4III ACNGT 4 cut(s) 687, 1260, 1318, 1592
HpyCH4IV ACGT 7 cut(s) 157, 211, 586, 1349, 1439, 1445, 1468
HpyF10VI GCNNNNNNNGC 7 cut(s) 203, 212, 434, 641, 1052, 1301, 1433
HpyF3I CTNAG 2 cut(s) 646, 1429
HpySE526I ACGT 7 cut(s) 157, 211, 586, 1349, 1439, 1445, 1468
Hsp92I GRCGYC 1 cut(s) 413
HspAI GCGC 2 cut(s) 1293, 1322
Ksp22I TGATCA 1 cut(s) 589
KspAI GTTAAC 1 cut(s) 1443
Kzo9I GATC 4 cut(s) 64, 142, 335, 589
LmnI GCTCC 2 cut(s) 203, 1060
LweI GCATC 3 cut(s) 490, 937, 1396
MaeI CTAG 3 cut(s) 162, 516, 882
MaeII ACGT 7 cut(s) 157, 211, 586, 1349, 1439, 1445, 1468
MaeIII GTNAC 4 cut(s) 8, 692, 735, 1618
MalI GATC 4 cut(s) 66, 144, 337, 591
MbiI CCGCTC 1 cut(s) 206
MboI GATC 4 cut(s) 64, 142, 335, 589
MboII GAAGA 6 cut(s) 62, 503, 690, 782, 1525, 1695
MflI RGATCY 2 cut(s) 64, 142
MhlI GDGCHC 1 cut(s) 217
MlyI GAGTC 2 cut(s) 5, 1515
Mph1103I ATGCAT 1 cut(s) 1553
MseI TTAA 6 cut(s) 269, 314, 582, 1070, 1442, 1491
MslI CAYNNNNRTG 3 cut(s) 945, 1261, 1556
MspA1I CMGCKG 2 cut(s) 37, 1105
MspI CCGG 4 cut(s) 44, 330, 657, 1640
MspR9I CCNGG 1 cut(s) 331
MwoI GCNNNNNNNGC 7 cut(s) 203, 212, 434, 641, 1052, 1301, 1433
NciI CCSGG 1 cut(s) 331
NdeII GATC 4 cut(s) 64, 142, 335, 589
NheI GCTAGC 1 cut(s) 515
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 1553
NspI RCATGY 3 cut(s) 818, 929, 1033
PagI TCATGA 1 cut(s) 592
PceI AGGCCT 1 cut(s) 981
PfeI GAWTC 3 cut(s) 779, 836, 1691
PleI GAGTC 2 cut(s) 5, 1515
PpsI GAGTC 2 cut(s) 5, 1515
Ppu21I YACGTR 1 cut(s) 158
PpuMI RGGWCCY 2 cut(s) 370, 1377
Psp1406I AACGTT 2 cut(s) 1439, 1445
Psp5II RGGWCCY 2 cut(s) 370, 1377
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 3 cut(s) 253, 370, 1377
PspPPI RGGWCCY 2 cut(s) 370, 1377
PsrI GAACNNNNNNTAC 2 cut(s) 157, 189
PstI CTGCAG 3 cut(s) 328, 637, 1665
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 2 cut(s) 64, 142
RsaI GTAC 3 cut(s) 81, 156, 1216
RsaNI GTAC 3 cut(s) 80, 155, 1215
RseI CAYNNNNRTG 3 cut(s) 945, 1261, 1556
SaqAI TTAA 6 cut(s) 269, 314, 582, 1070, 1442, 1491
Sau3AI GATC 4 cut(s) 64, 142, 335, 589
Sau96I GGNCC 3 cut(s) 253, 370, 1377
SchI GAGTC 2 cut(s) 5, 1515
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 3 cut(s) 490, 937, 1396
SfcI CTRYAG 3 cut(s) 324, 633, 1661
SinI GGWCC 3 cut(s) 253, 370, 1377
SmiMI CAYNNNNRTG 3 cut(s) 945, 1261, 1556
SmlI CTYRAG 1 cut(s) 1188
SmoI CTYRAG 1 cut(s) 1188
SseBI AGGCCT 1 cut(s) 981
SsiI CCGC 7 cut(s) 35, 98, 206, 503, 1058, 1105, 1475
SspI AATATT 1 cut(s) 151
SspMI CTAG 3 cut(s) 162, 516, 882
StuI AGGCCT 1 cut(s) 981
StyD4I CCNGG 1 cut(s) 329
TaaI ACNGT 4 cut(s) 687, 1260, 1318, 1592
TaiI ACGT 7 cut(s) 160, 214, 589, 1352, 1442, 1448, 1471
TaqI TCGA 2 cut(s) 168, 548
TfiI GAWTC 3 cut(s) 779, 836, 1691
Tru1I TTAA 6 cut(s) 269, 314, 582, 1070, 1442, 1491
Tru9I TTAA 6 cut(s) 269, 314, 582, 1070, 1442, 1491
TscAI CASTG 2 cut(s) 204, 1207
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 8 cut(s) 63, 179, 602, 1025, 1140, 1178, 1259, 1384
TspRI CASTG 2 cut(s) 204, 1207
VpaK11BI GGWCC 3 cut(s) 253, 370, 1377
XagI CCTNNNNNAGG 1 cut(s) 986
XapI RAATTY 3 cut(s) 844, 1168, 1483
XceI RCATGY 3 cut(s) 818, 929, 1033
XmiI GTMKAC 1 cut(s) 179
XspI CTAG 3 cut(s) 162, 516, 882
Zsp2I ATGCAT 1 cut(s) 1553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.