Rorug01G0012100

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000157
Physical Location & Seq
Forward (+)
2001830 .. 2002114
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0012100.1

Sequence Viewer

Length: 285 bp
ATGAAGGACGTGGTGCTGAACAATCTAGCTCTGTCAGACGTGAACTTGCACGACTTGATAGTTAGTGCTGATGCCGTGACGTCGGAGGAGAAGAAAGACGAGAAGGGACAGGTTTACTATGTATATGAGAAGAATGGGATTGCAACACATAGTTTGATTTTGGTGACTTGTGCTAACAACAAGCTTTATGCTCATTTTGTCAATGCGCCTACCCCCGAGTGGAATCGCGACAATGATATGTTGAAGCATATTCATGAGTCTTTCAAAACTATTGGATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

94

Amino Acids

10.63

Weight (kDa)

5.62

Isoelectric Point (pI)

19.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 25 - 89 6.6e-07 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 83
AccII CGCG 1 cut(s) 228
AclWI GGATC 2 cut(s) 270, 283
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 244, 265
AjiI CACGTC 2 cut(s) 10, 40
AluBI AGCT 2 cut(s) 29, 184
AluI AGCT 2 cut(s) 29, 184
AlwI GGATC 2 cut(s) 270, 283
Ama87I CYCGRG 1 cut(s) 215
AspLEI GCGC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 215
BamHI GGATCC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 59
BfaI CTAG 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 2 cut(s) 10, 40
BmiI GGNNCC 1 cut(s) 277
BmsI GCATC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 215
Bsp143I GATC 1 cut(s) 275
Bsp68I TCGCGA 1 cut(s) 228
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 277
BspPI GGATC 2 cut(s) 270, 283
BssMI GATC 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 80
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 278
BstMBI GATC 1 cut(s) 275
BstUI CGCG 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BtrI CACGTC 2 cut(s) 10, 40
BtuMI TCGCGA 1 cut(s) 228
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 208
CviAII CATG 1 cut(s) 254
CviJI RGCY 2 cut(s) 29, 184
CviKI_1 RGCY 2 cut(s) 29, 184
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 215
FaeI CATG 1 cut(s) 257
FaiI YATR 8 cut(s) 120, 124, 126, 150, 189, 239, 249, 255
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 253
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 223, 257
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 43, 115
Hpy188I TCNGA 2 cut(s) 37, 85
Hpy188III TCNNGA 2 cut(s) 227, 254
Hpy8I GTNNAC 2 cut(s) 43, 115
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 97
HpyCH4IV ACGT 3 cut(s) 9, 39, 80
HpyCH4V TGCA 2 cut(s) 49, 143
HpySE526I ACGT 3 cut(s) 9, 39, 80
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 1 cut(s) 275
LpnPI CCDG 1 cut(s) 95
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 26
MaeII ACGT 3 cut(s) 9, 39, 80
MaeIII GTNAC 2 cut(s) 76, 163
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MboII GAAGA 2 cut(s) 103, 142
MflI RGATCY 1 cut(s) 275
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 252
MvnI CGCG 1 cut(s) 228
NdeII GATC 1 cut(s) 275
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 76, 163
NruI TCGCGA 1 cut(s) 228
PagI TCATGA 1 cut(s) 253
PfeI GAWTC 1 cut(s) 223
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 275
RruI TCGCGA 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 252
Sau3AI GATC 1 cut(s) 275
SchI GAGTC 1 cut(s) 266
SetI ASST 6 cut(s) 12, 31, 42, 83, 114, 186
SfaNI GCATC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 252
SspMI CTAG 1 cut(s) 26
TaiI ACGT 3 cut(s) 12, 42, 83
TfiI GAWTC 1 cut(s) 223
TseFI GTSAC 2 cut(s) 76, 163
Tsp45I GTSAC 2 cut(s) 76, 163
TspDTI ATGAA 2 cut(s) 17, 242
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.